Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005745

Physical Location & Seq

Genomic Coordinates Forward (+)

59015301 .. 59016310

Gene Structure 1010 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0458600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGATTTCCCGTGTCTTCTTCGTGTTTTCTCTCATTCTCTCCGGTTCCTATGCTGCTATGCAAGACTTTTGTGTTGCAGACTATGCAGCTCCTCAAAGCCCTGCAGGGTACGCTTGCAAAGATCCCGCAAAGGTTACGGTAGATGACTTTGTGTTCTCTGGCCTAAGAGTTGCTGGTAACATCTCAAGTATCAACAAAATCGGGCTATCGGCTGCATTTGCTGTTAACTTTCCTGGTCTCAATGGCCTAGGCGTTGCACTGGTTCGTGCAGACTTTGCTGTTGGTGGAGTTGTCCCGATTCACTCACACCGTGACGCTACAGAACTTGTAATCCTTGTGGAAGGAACAGTAGTTGCCGGTTTCGTTGCCTCGAATAATAAGCCTTATGTAAAGACTCTGAACAAGGGTGACACTATGGTTTTTCCTCAAGGTTTGTTTCACTTCCTAGTGAATGTGGGTGATGCTCCAGCACTTGCATATGCCAGCTTCAGTAGTGCAAACCCAGGTGTGCAGACTCTGGAAACTGCTCTGTTTCAAAACAATTTTCCTACTGAAATCATAGCCAAGTCTACTTTACTTGACACCGTTCAGATTCAGAAACTCAAGCGTCTTCTTGGGGGTACTAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031461 GO:0031625 GO:0032991 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_4 Ank_5 BTB

Protein Analysis

209

Amino Acids

22.04

Weight (kDa)

6.82

Isoelectric Point (pI)

35.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	55 - 198	1.9e-32	Cupin
Cupin_2	PF07883	90 - 160	6.1e-09	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04740 AT2G04740 AT2G04740 AT2G04740
fragaria_vesca	FvH4_6g41550 FvH4_6g41550 FvH4_6g41550 FvH4_6g41550
malus_domestica	MD17G1109800.v1.1
prunus_persica	Prupe.3G205300_v2.0.a1
pyrus_communis	pycom17g10210
rosa_chinensis	RchiOBHm_Chr2g0157231
rosa_laevigata	RLG00000020973
rosa_multiflora	Rmu_sc0006282.1_g000006 Rmu_sc0018717.1_g000001 Rmu_sc0028571.1_g000001
rosa_roxburghii	Rroxscaffold_2G00092390
rosa_rugosa	Rorug02G0458600 Rorug02G0458700 Rorug02G0458700 Rorug02G0458800 Rorug02G0458900
rosa_samantha	Rh2AG524000 Rh2BG538400 Rh2CG508800 Rh2DG547300
rosa_wichuraiana	Rw2G043340 Rw2G043400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	569
AciI	CCGC	1 cut(s)	126
AclWI	GGATC	1 cut(s)	116
AcuI	CTGAAG	1 cut(s)	472
AdeI	CACNNNGTG	1 cut(s)	311
AfaI	GTAC	2 cut(s)	110, 622
AgsI	TTSAA	1 cut(s)	536
AjnI	CCWGG	2 cut(s)	232, 502
AloI	GAACNNNNNNTCC	2 cut(s)	315, 347
AluBI	AGCT	2 cut(s)	89, 486
AluI	AGCT	2 cut(s)	89, 486
Alw26I	GTCTC	1 cut(s)	242
AlwI	GGATC	1 cut(s)	116
AlwNI	CAGNNNCTG	1 cut(s)	517
AoxI	GGCC	2 cut(s)	160, 244
ApeKI	GCWGC	3 cut(s)	53, 86, 212
AspA2I	CCTAGG	1 cut(s)	247
AsuHPI	GGTGA	2 cut(s)	419, 470
AvrII	CCTAGG	1 cut(s)	247
BbsI	GAAGAC	2 cut(s)	7, 602
BbvI	GCAGC	3 cut(s)	40, 98, 199
BciT130I	CCWGG	2 cut(s)	234, 504
BcoDI	GTCTC	1 cut(s)	242
BfaI	CTAG	3 cut(s)	248, 446, 628
BfmI	CTRYAG	2 cut(s)	102, 318
BisI	GCNGC	3 cut(s)	54, 87, 213
BlnI	CCTAGG	1 cut(s)	247
BlsI	GCNGC	3 cut(s)	55, 88, 214
Bme1390I	CCNGG	2 cut(s)	234, 504
BmiI	GGNNCC	1 cut(s)	46
BmrFI	CCNGG	2 cut(s)	234, 504
BmsI	GCATC	1 cut(s)	451
BpiI	GAAGAC	2 cut(s)	7, 602
BpmI	CTGGAG	1 cut(s)	450
BpuEI	CTTGAG	3 cut(s)	169, 411, 587
BsaI	GGTCTC	1 cut(s)	242
BsaJI	CCNNGG	2 cut(s)	247, 502
BsaWI	WCCGGW	1 cut(s)	41
Bse118I	RCCGGY	1 cut(s)	356
Bse1I	ACTGG	1 cut(s)	264
BseBI	CCWGG	2 cut(s)	234, 504
BseDI	CCNNGG	2 cut(s)	247, 502
BseNI	ACTGG	1 cut(s)	264
BseRI	GAGGAG	1 cut(s)	81
BseXI	GCAGC	3 cut(s)	40, 98, 199
BsgI	GTGCAG	2 cut(s)	288, 530
BshFI	GGCC	2 cut(s)	162, 246
BsiSI	CCGG	2 cut(s)	42, 357
BslFI	GGGAC	1 cut(s)	278
BsmAI	GTCTC	1 cut(s)	242
BsmFI	GGGAC	1 cut(s)	278
BsnI	GGCC	2 cut(s)	162, 246
Bso31I	GGTCTC	1 cut(s)	242
Bsp143I	GATC	1 cut(s)	121
BspACI	CCGC	1 cut(s)	126
BspANI	GGCC	2 cut(s)	162, 246
BspLI	GGNNCC	1 cut(s)	46
BspMAI	CTGCAG	1 cut(s)	106
BspPI	GGATC	1 cut(s)	116
BspTNI	GGTCTC	1 cut(s)	242
BsrFI	RCCGGY	1 cut(s)	356
BsrI	ACTGG	1 cut(s)	264
BssAI	RCCGGY	1 cut(s)	356
BssECI	CCNNGG	2 cut(s)	247, 502
BssMI	GATC	1 cut(s)	121
BssT1I	CCWWGG	1 cut(s)	247
Bst2UI	CCWGG	2 cut(s)	234, 504
Bst4CI	ACNGT	4 cut(s)	139, 311, 349, 586
BstAPI	GCANNNNNTGC	2 cut(s)	83, 275
BstC8I	GCNNGC	2 cut(s)	115, 484
BstDEI	CTNAG	1 cut(s)	164
BstKTI	GATC	1 cut(s)	124
BstMAI	GTCTC	1 cut(s)	242
BstMBI	GATC	1 cut(s)	121
BstMWI	GCNNNNNNNGC	4 cut(s)	83, 110, 218, 275
BstNI	CCWGG	2 cut(s)	234, 504
BstSCI	CCNGG	2 cut(s)	232, 502
BstSFI	CTRYAG	2 cut(s)	102, 318
BstV1I	GCAGC	3 cut(s)	40, 98, 199
BstV2I	GAAGAC	2 cut(s)	7, 602
BstX2I	RGATCY	1 cut(s)	121
BstYI	RGATCY	1 cut(s)	121
BsuRI	GGCC	2 cut(s)	162, 246
BtsIMutI	CAGTG	1 cut(s)	257
Cac8I	GCNNGC	2 cut(s)	115, 484
CaiI	CAGNNNCTG	1 cut(s)	517
Cfr10I	RCCGGY	1 cut(s)	356
CseI	GACGC	2 cut(s)	323, 596
Csp6I	GTAC	2 cut(s)	109, 621
CviJI	RGCY	9 cut(s)	89, 99, 162, 205, 212, 246, 382, 486, 563
CviKI_1	RGCY	9 cut(s)	89, 99, 162, 205, 212, 246, 382, 486, 563
CviQI	GTAC	2 cut(s)	109, 621
DdeI	CTNAG	1 cut(s)	164
DpnI	GATC	1 cut(s)	123
DpnII	GATC	1 cut(s)	121
DraIII	CACNNNGTG	1 cut(s)	311
Eco130I	CCWWGG	1 cut(s)	247
Eco31I	GGTCTC	1 cut(s)	242
Eco57I	CTGAAG	1 cut(s)	472
EcoRII	CCWGG	2 cut(s)	232, 502
EcoT14I	CCWWGG	1 cut(s)	247
ErhI	CCWWGG	1 cut(s)	247
FaiI	YATR	8 cut(s)	51, 59, 84, 387, 416, 478, 480, 560
FaqI	GGGAC	1 cut(s)	278
FauI	CCCGC	1 cut(s)	133
FauNDI	CATATG	1 cut(s)	478
FblI	GTMKAC	1 cut(s)	569
Fnu4HI	GCNGC	3 cut(s)	54, 87, 213
Fsp4HI	GCNGC	3 cut(s)	54, 87, 213
FspBI	CTAG	3 cut(s)	248, 446, 628
GluI	GCNGC	3 cut(s)	54, 87, 213
GsuI	CTGGAG	1 cut(s)	450
HaeIII	GGCC	2 cut(s)	162, 246
HapII	CCGG	2 cut(s)	42, 357
HgaI	GACGC	2 cut(s)	323, 596
HincII	GTYRAC	1 cut(s)	226
HindII	GTYRAC	1 cut(s)	226
HinfI	GANTC	4 cut(s)	298, 394, 514, 592
HpaI	GTTAAC	1 cut(s)	226
HpaII	CCGG	2 cut(s)	42, 357
HphI	GGTGA	2 cut(s)	419, 470
Hpy166II	GTNNAC	2 cut(s)	226, 570
Hpy188I	TCNGA	3 cut(s)	399, 591, 597
Hpy188III	TCNNGA	2 cut(s)	295, 518
Hpy8I	GTNNAC	2 cut(s)	226, 570
HpyAV	CCTTC	1 cut(s)	335
HpyCH4III	ACNGT	4 cut(s)	139, 311, 349, 586
HpyF10VI	GCNNNNNNNGC	4 cut(s)	83, 110, 218, 275
HpyF3I	CTNAG	1 cut(s)	164
KspAI	GTTAAC	1 cut(s)	226
Kzo9I	GATC	1 cut(s)	121
LmnI	GCTCC	2 cut(s)	94, 469
Lsp1109I	GCAGC	3 cut(s)	40, 98, 199
LweI	GCATC	1 cut(s)	451
MaeI	CTAG	3 cut(s)	248, 446, 628
MaeIII	GTNAC	4 cut(s)	133, 176, 311, 407
MalI	GATC	1 cut(s)	123
MboI	GATC	1 cut(s)	121
MboII	GAAGA	3 cut(s)	7, 10, 602
MflI	RGATCY	1 cut(s)	121
MluCI	AATT	1 cut(s)	541
MlyI	GAGTC	2 cut(s)	388, 508
MnlI	CCTC	3 cut(s)	102, 379, 435
MseI	TTAA	1 cut(s)	225
MspI	CCGG	2 cut(s)	42, 357
MspR9I	CCNGG	2 cut(s)	234, 504
MvaI	CCWGG	2 cut(s)	234, 504
MwoI	GCNNNNNNNGC	4 cut(s)	83, 110, 218, 275
NdeI	CATATG	1 cut(s)	478
NdeII	GATC	1 cut(s)	121
NlaIV	GGNNCC	1 cut(s)	46
NmuCI	GTSAC	2 cut(s)	311, 407
PfeI	GAWTC	2 cut(s)	298, 592
PkrI	GCNGC	3 cut(s)	55, 88, 214
PleI	GAGTC	2 cut(s)	388, 508
PpsI	GAGTC	2 cut(s)	388, 508
Psp6I	CCWGG	2 cut(s)	232, 502
PspGI	CCWGG	2 cut(s)	232, 502
PspN4I	GGNNCC	1 cut(s)	46
PstI	CTGCAG	1 cut(s)	106
PstNI	CAGNNNCTG	1 cut(s)	517
PsuI	RGATCY	1 cut(s)	121
RsaI	GTAC	2 cut(s)	110, 622
RsaNI	GTAC	2 cut(s)	109, 621
SaqAI	TTAA	1 cut(s)	225
SatI	GCNGC	3 cut(s)	54, 87, 213
Sau3AI	GATC	1 cut(s)	121
SbfI	CCTGCAGG	1 cut(s)	106
SchI	GAGTC	2 cut(s)	388, 508
ScrFI	CCNGG	2 cut(s)	234, 504
SdaI	CCTGCAGG	1 cut(s)	106
SetI	ASST	5 cut(s)	91, 135, 433, 488, 508
SfaNI	GCATC	1 cut(s)	451
SfcI	CTRYAG	2 cut(s)	102, 318
SmlI	CTYRAG	3 cut(s)	184, 426, 602
SmoI	CTYRAG	3 cut(s)	184, 426, 602
Sse8387I	CCTGCAGG	1 cut(s)	106
Sse9I	AATT	1 cut(s)	541
SsiI	CCGC	1 cut(s)	126
SspMI	CTAG	3 cut(s)	248, 446, 628
StyD4I	CCNGG	2 cut(s)	232, 502
StyI	CCWWGG	1 cut(s)	247
TaaI	ACNGT	4 cut(s)	139, 311, 349, 586
TaqI	TCGA	1 cut(s)	371
TasI	AATT	1 cut(s)	541
TfiI	GAWTC	2 cut(s)	298, 592
Tru1I	TTAA	1 cut(s)	225
Tru9I	TTAA	1 cut(s)	225
TscAI	CASTG	1 cut(s)	264
TseFI	GTSAC	2 cut(s)	311, 407
TseI	GCWGC	3 cut(s)	53, 86, 212
Tsp45I	GTSAC	2 cut(s)	311, 407
TspRI	CASTG	1 cut(s)	264
XmaJI	CCTAGG	1 cut(s)	247
XmiI	GTMKAC	1 cut(s)	569
XspI	CTAG	3 cut(s)	248, 446, 628

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.