Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005745

Physical Location & Seq

Genomic Coordinates Forward (+)

59096612 .. 59097459

Gene Structure 848 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0458900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGTCTATATCATGTATAAATAGGTATAGAGACTTGTGTGACAAGCTTTATGCCAAAGGGCAACAAGCATGGCAGATTTCATCATTGAATGCAAAAAGAAGTTATCTAGAGTTACCAGTTTCTGTGATGTCCAGAAATGGTACTAATCAGCAATACAATCACTTCTCTCAACTCCCCCCAACACTATATCTTGGTTGGAATAGCCTCAGTGGAAATATCCCTATTGAGATTGGCCAATTGAAGTTTCTTCATGAGTTGGATCTTAGCCATAATAACTTCTCTGGCAGCATCCCAGTTCAGATTTCGAATCTATCTAACCTAGAGAAATTGGATCTCTCCTATAACCATCTATCTGGTGCAATCCCTGCTTCCCTTACAGCTCTGAATTTCCTTTCTTTCTTCAGTATTGCATACAATGATCTTCAGGGTTTTGTACCATCTGGAGGCCAGTTCAGTACTTTTACCATCTCCAGTTTTGAAGGAAATCCACGATTATGTGGCTATCAAACTGCACAGCAATCTTGCTCTCTAAGTCCTCCAAGCCCTCCTGTGTTTGCAGGTACTCAGAGATCTTCCAACAAGATTCTAAGTGCACTCATCTTTGGGATCACTTTCAGCATTTTCTTGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031461 GO:0031625 GO:0032991 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_4 Ank_5 BTB

Protein Analysis

210

Amino Acids

23.14

Weight (kDa)

8.36

Isoelectric Point (pI)

50.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	46 - 136	5.8e-08	Leucine-rich repeat region
LRR_8	PF13855	83 - 141	8.1e-07	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04740 AT2G04740 AT2G04740 AT2G04740
fragaria_vesca	FvH4_6g41550 FvH4_6g41550 FvH4_6g41550 FvH4_6g41550
malus_domestica	MD17G1109800.v1.1
prunus_persica	Prupe.3G205300_v2.0.a1
pyrus_communis	pycom17g10210
rosa_chinensis	RchiOBHm_Chr2g0157231
rosa_laevigata	RLG00000020973
rosa_multiflora	Rmu_sc0006282.1_g000006 Rmu_sc0018717.1_g000001 Rmu_sc0028571.1_g000001
rosa_roxburghii	Rroxscaffold_2G00092390
rosa_rugosa	Rorug02G0458600 Rorug02G0458700 Rorug02G0458700 Rorug02G0458800 Rorug02G0458900
rosa_samantha	Rh2AG524000 Rh2BG538400 Rh2CG508800 Rh2DG547300
rosa_wichuraiana	Rw2G043340 Rw2G043400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	548
AclWI	GGATC	3 cut(s)	267, 339, 614
AcoI	YGGCCR	1 cut(s)	232
AcsI	RAATTY	1 cut(s)	385
AcuI	CTGAAG	2 cut(s)	385, 407
AfaI	GTAC	4 cut(s)	142, 435, 457, 562
AfiI	CCNNNNNNNGG	1 cut(s)	443
AgsI	TTSAA	3 cut(s)	88, 241, 479
AjuI	GAANNNNNNNTTGG	2 cut(s)	228, 260
AluBI	AGCT	2 cut(s)	46, 380
AluI	AGCT	2 cut(s)	46, 380
Alw21I	GWGCWC	1 cut(s)	595
Alw26I	GTCTC	1 cut(s)	24
Alw44I	GTGCAC	1 cut(s)	591
AlwI	GGATC	3 cut(s)	267, 339, 614
AlwNI	CAGNNNCTG	1 cut(s)	122
AoxI	GGCC	2 cut(s)	232, 445
ApaLI	GTGCAC	1 cut(s)	591
ApeKI	GCWGC	1 cut(s)	285
ApoI	RAATTY	1 cut(s)	385
AsuII	TTCGAA	1 cut(s)	305
BaeGI	GKGCMC	1 cut(s)	595
BalI	TGGCCA	1 cut(s)	234
Bbv12I	GWGCWC	1 cut(s)	595
BbvI	GCAGC	1 cut(s)	297
BccI	CCATC	3 cut(s)	354, 445, 473
BcoDI	GTCTC	1 cut(s)	24
BfaI	CTAG	2 cut(s)	107, 320
BfuAI	ACCTGC	1 cut(s)	548
BglII	AGATCT	1 cut(s)	569
BisI	GCNGC	1 cut(s)	286
BlsI	GCNGC	1 cut(s)	287
BmcAI	AGTACT	1 cut(s)	457
BmrI	ACTGGG	1 cut(s)	287
BmsI	GCATC	1 cut(s)	297
BmuI	ACTGGG	1 cut(s)	287
BpmI	CTGGAG	2 cut(s)	454, 462
Bpu14I	TTCGAA	1 cut(s)	305
Bsc4I	CCNNNNNNNGG	1 cut(s)	443
Bse1I	ACTGG	4 cut(s)	116, 293, 448, 471
BseGI	GGATG	1 cut(s)	288
BseLI	CCNNNNNNNGG	1 cut(s)	443
BseMII	CTCAG	2 cut(s)	220, 578
BseNI	ACTGG	4 cut(s)	116, 293, 448, 471
BseSI	GKGCMC	1 cut(s)	595
BseXI	GCAGC	1 cut(s)	297
BsgI	GTGCAG	1 cut(s)	495
BshFI	GGCC	2 cut(s)	234, 447
BsiHKAI	GWGCWC	1 cut(s)	595
BslI	CCNNNNNNNGG	1 cut(s)	443
BsmAI	GTCTC	1 cut(s)	24
BsmI	GAATGC	1 cut(s)	94
BsnI	GGCC	2 cut(s)	234, 447
Bsp119I	TTCGAA	1 cut(s)	305
Bsp1286I	GDGCHC	1 cut(s)	595
Bsp143I	GATC	5 cut(s)	259, 331, 418, 569, 606
BspANI	GGCC	2 cut(s)	234, 447
BspCNI	CTCAG	2 cut(s)	219, 577
BspHI	TCATGA	1 cut(s)	250
BspMI	ACCTGC	1 cut(s)	548
BspPI	GGATC	3 cut(s)	267, 339, 614
BspT104I	TTCGAA	1 cut(s)	305
BsrI	ACTGG	4 cut(s)	116, 293, 448, 471
BssMI	GATC	5 cut(s)	259, 331, 418, 569, 606
BstAPI	GCANNNNNTGC	1 cut(s)	365
BstBI	TTCGAA	1 cut(s)	305
BstDEI	CTNAG	5 cut(s)	206, 263, 530, 564, 587
BstF5I	GGATG	1 cut(s)	288
BstKTI	GATC	5 cut(s)	262, 334, 421, 572, 609
BstMAI	GTCTC	1 cut(s)	24
BstMBI	GATC	5 cut(s)	259, 331, 418, 569, 606
BstMWI	GCNNNNNNNGC	1 cut(s)	365
BstSLI	GKGCMC	1 cut(s)	595
BstV1I	GCAGC	1 cut(s)	297
BstX2I	RGATCY	3 cut(s)	259, 331, 569
BstXI	CCANNNNNNTGG	1 cut(s)	353
BstYI	RGATCY	3 cut(s)	259, 331, 569
BsuRI	GGCC	2 cut(s)	234, 447
BtsCI	GGATG	1 cut(s)	288
BtsIMutI	CAGTG	1 cut(s)	214
BveI	ACCTGC	1 cut(s)	548
CaiI	CAGNNNCTG	1 cut(s)	122
CciI	TCATGA	1 cut(s)	250
Csp6I	GTAC	4 cut(s)	141, 434, 456, 561
CviAII	CATG	3 cut(s)	12, 69, 251
CviJI	RGCY	8 cut(s)	46, 204, 234, 267, 380, 447, 501, 543
CviKI_1	RGCY	8 cut(s)	46, 204, 234, 267, 380, 447, 501, 543
CviQI	GTAC	4 cut(s)	141, 434, 456, 561
DdeI	CTNAG	5 cut(s)	206, 263, 530, 564, 587
DpnI	GATC	5 cut(s)	261, 333, 420, 571, 608
DpnII	GATC	5 cut(s)	259, 331, 418, 569, 606
EaeI	YGGCCR	1 cut(s)	232
Eco57I	CTGAAG	2 cut(s)	385, 407
FaeI	CATG	3 cut(s)	15, 72, 254
FatI	CATG	3 cut(s)	11, 68, 250
Fnu4HI	GCNGC	1 cut(s)	286
FokI	GGATG	1 cut(s)	275
Fsp4HI	GCNGC	1 cut(s)	286
FspBI	CTAG	2 cut(s)	107, 320
GluI	GCNGC	1 cut(s)	286
GsuI	CTGGAG	2 cut(s)	454, 462
HaeIII	GGCC	2 cut(s)	234, 447
Hin1II	CATG	3 cut(s)	15, 72, 254
HindIII	AAGCTT	1 cut(s)	44
HinfI	GANTC	2 cut(s)	307, 583
Hpy166II	GTNNAC	1 cut(s)	593
Hpy188I	TCNGA	3 cut(s)	300, 384, 567
Hpy188III	TCNNGA	4 cut(s)	107, 132, 251, 441
Hpy8I	GTNNAC	1 cut(s)	593
HpyAV	CCTTC	1 cut(s)	473
HpyCH4V	TGCA	6 cut(s)	92, 359, 410, 512, 557, 593
HpyF10VI	GCNNNNNNNGC	1 cut(s)	365
HpyF3I	CTNAG	5 cut(s)	206, 263, 530, 564, 587
Hsp92II	CATG	3 cut(s)	15, 72, 254
Kzo9I	GATC	5 cut(s)	259, 331, 418, 569, 606
Lsp1109I	GCAGC	1 cut(s)	297
LweI	GCATC	1 cut(s)	297
MaeI	CTAG	2 cut(s)	107, 320
MaeIII	GTNAC	2 cut(s)	38, 111
MalI	GATC	5 cut(s)	261, 333, 420, 571, 608
MboI	GATC	5 cut(s)	259, 331, 418, 569, 606
MboII	GAAGA	4 cut(s)	239, 391, 413, 564
MfeI	CAATTG	1 cut(s)	236
MflI	RGATCY	3 cut(s)	259, 331, 569
MhlI	GDGCHC	1 cut(s)	595
MlsI	TGGCCA	1 cut(s)	234
MluCI	AATT	3 cut(s)	236, 326, 385
MluNI	TGGCCA	1 cut(s)	234
MmeI	TCCRAC	3 cut(s)	176, 237, 600
MnlI	CCTC	4 cut(s)	215, 437, 546, 555
Mox20I	TGGCCA	1 cut(s)	234
MscI	TGGCCA	1 cut(s)	234
MseI	TTAA	1 cut(s)	631
MslI	CAYNNNNRTG	1 cut(s)	493
Msp20I	TGGCCA	1 cut(s)	234
MunI	CAATTG	1 cut(s)	236
Mva1269I	GAATGC	1 cut(s)	94
MwoI	GCNNNNNNNGC	1 cut(s)	365
NdeII	GATC	5 cut(s)	259, 331, 418, 569, 606
NlaIII	CATG	3 cut(s)	15, 72, 254
NmuCI	GTSAC	1 cut(s)	38
NspV	TTCGAA	1 cut(s)	305
PagI	TCATGA	1 cut(s)	250
PctI	GAATGC	1 cut(s)	94
PfeI	GAWTC	2 cut(s)	307, 583
PkrI	GCNGC	1 cut(s)	287
PstNI	CAGNNNCTG	1 cut(s)	122
PsuI	RGATCY	3 cut(s)	259, 331, 569
RsaI	GTAC	4 cut(s)	142, 435, 457, 562
RsaNI	GTAC	4 cut(s)	141, 434, 456, 561
RseI	CAYNNNNRTG	1 cut(s)	493
SaqAI	TTAA	1 cut(s)	631
SatI	GCNGC	1 cut(s)	286
Sau3AI	GATC	5 cut(s)	259, 331, 418, 569, 606
ScaI	AGTACT	1 cut(s)	457
SduI	GDGCHC	1 cut(s)	595
SetI	ASST	5 cut(s)	26, 48, 321, 382, 562
SfaNI	GCATC	1 cut(s)	297
SfuI	TTCGAA	1 cut(s)	305
SmiMI	CAYNNNNRTG	1 cut(s)	493
Sse9I	AATT	3 cut(s)	236, 326, 385
SspMI	CTAG	2 cut(s)	107, 320
TaqI	TCGA	1 cut(s)	305
TasI	AATT	3 cut(s)	236, 326, 385
TatI	WGTACW	1 cut(s)	455
TfiI	GAWTC	2 cut(s)	307, 583
Tru1I	TTAA	1 cut(s)	631
Tru9I	TTAA	1 cut(s)	631
TscAI	CASTG	1 cut(s)	214
TseFI	GTSAC	1 cut(s)	38
TseI	GCWGC	1 cut(s)	285
Tsp45I	GTSAC	1 cut(s)	38
TspDTI	ATGAA	2 cut(s)	69, 239
TspRI	CASTG	1 cut(s)	214
VneI	GTGCAC	1 cut(s)	591
XapI	RAATTY	1 cut(s)	385
XbaI	TCTAGA	1 cut(s)	106
XspI	CTAG	2 cut(s)	107, 320
ZrmI	AGTACT	1 cut(s)	457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.