Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0028571.1

Orthogroup ID

OG0005745

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 465

Gene Structure 465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0028571.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

atggattatgacaatgtcagtcctgctggtcttccagccagtgatggatattttcctccagatgtggcattttttgttcaagggagagccattgaagctcatagagtcatcttaagtgctcggtcaccatttttcagaagaaagtttgtgactgattggaaagaacgcagggaagtgagattttcaagggaaaagttgtcatatcctgctctatacagtctcatccaattcttttactccgacagactagaagttgctgtagatgatatggaggatcttgtgaggatctgcaaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031461 GO:0031625 GO:0032991 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_4 Ank_5 BTB

Protein Analysis

98

Amino Acids

11.52

Weight (kDa)

6.57

Isoelectric Point (pI)

58.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04740 AT2G04740 AT2G04740 AT2G04740
fragaria_vesca	FvH4_6g41550 FvH4_6g41550 FvH4_6g41550 FvH4_6g41550
malus_domestica	MD17G1109800.v1.1
prunus_persica	Prupe.3G205300_v2.0.a1
pyrus_communis	pycom17g10210
rosa_chinensis	RchiOBHm_Chr2g0157231
rosa_laevigata	RLG00000020973
rosa_multiflora	Rmu_sc0006282.1_g000006 Rmu_sc0018717.1_g000001 Rmu_sc0028571.1_g000001
rosa_roxburghii	Rroxscaffold_2G00092390
rosa_rugosa	Rorug02G0458600 Rorug02G0458700 Rorug02G0458700 Rorug02G0458800 Rorug02G0458900
rosa_samantha	Rh2AG524000 Rh2BG538400 Rh2CG508800 Rh2DG547300
rosa_wichuraiana	Rw2G043340 Rw2G043400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	282, 293
AflII	CTTAAG	1 cut(s)	112
AgsI	TTSAA	3 cut(s)	80, 95, 186
AluBI	AGCT	1 cut(s)	98
AluI	AGCT	1 cut(s)	98
Alw21I	GWGCWC	1 cut(s)	121
Alw26I	GTCTC	1 cut(s)	224
AlwI	GGATC	2 cut(s)	282, 293
AsuHPI	GGTGA	1 cut(s)	117
BbsI	GAAGAC	1 cut(s)	23
Bbv12I	GWGCWC	1 cut(s)	121
BccI	CCATC	1 cut(s)	38
BcoDI	GTCTC	1 cut(s)	224
BfaI	CTAG	1 cut(s)	248
BfmI	CTRYAG	1 cut(s)	258
BfrI	CTTAAG	1 cut(s)	112
BpiI	GAAGAC	1 cut(s)	23
BpmI	CTGGAG	1 cut(s)	42
Bse1I	ACTGG	1 cut(s)	39
BseGI	GGATG	1 cut(s)	222
BseNI	ACTGG	1 cut(s)	39
BsiHKAI	GWGCWC	1 cut(s)	121
BsmAI	GTCTC	1 cut(s)	224
Bsp1286I	GDGCHC	1 cut(s)	121
Bsp143I	GATC	2 cut(s)	274, 285
BspPI	GGATC	2 cut(s)	282, 293
BspTI	CTTAAG	1 cut(s)	112
BsrI	ACTGG	1 cut(s)	39
BssMI	GATC	2 cut(s)	274, 285
Bst4CI	ACNGT	1 cut(s)	218
BstAFI	CTTAAG	1 cut(s)	112
BstEII	GGTNACC	1 cut(s)	123
BstF5I	GGATG	1 cut(s)	222
BstKTI	GATC	2 cut(s)	277, 288
BstMAI	GTCTC	1 cut(s)	224
BstMBI	GATC	2 cut(s)	274, 285
BstMWI	GCNNNNNNNGC	1 cut(s)	95
BstPI	GGTNACC	1 cut(s)	123
BstSFI	CTRYAG	1 cut(s)	258
BstV2I	GAAGAC	1 cut(s)	23
BstX2I	RGATCY	2 cut(s)	274, 285
BstYI	RGATCY	2 cut(s)	274, 285
BtsCI	GGATG	1 cut(s)	222
BtsIMutI	CAGTG	1 cut(s)	46
CviJI	RGCY	3 cut(s)	38, 89, 98
CviKI_1	RGCY	3 cut(s)	38, 89, 98
DpnI	GATC	2 cut(s)	276, 287
DpnII	GATC	2 cut(s)	274, 285
Eco91I	GGTNACC	1 cut(s)	123
EcoO65I	GGTNACC	1 cut(s)	123
FaiI	YATR	5 cut(s)	9, 102, 202, 214, 269
FokI	GGATG	1 cut(s)	209
FspBI	CTAG	1 cut(s)	248
GsuI	CTGGAG	1 cut(s)	42
HinfI	GANTC	1 cut(s)	105
HphI	GGTGA	1 cut(s)	117
Hpy188I	TCNGA	2 cut(s)	137, 241
Hpy188III	TCNNGA	1 cut(s)	59
HpyCH4III	ACNGT	1 cut(s)	218
HpyCH4V	TGCA	1 cut(s)	291
HpyF10VI	GCNNNNNNNGC	1 cut(s)	95
Kzo9I	GATC	2 cut(s)	274, 285
LpnPI	CCDG	7 cut(s)	12, 36, 48, 52, 72, 154, 219
MaeI	CTAG	1 cut(s)	248
MaeIII	GTNAC	2 cut(s)	123, 148
MalI	GATC	2 cut(s)	276, 287
MboI	GATC	2 cut(s)	274, 285
MboII	GAAGA	2 cut(s)	23, 150
MflI	RGATCY	2 cut(s)	274, 285
MhlI	GDGCHC	1 cut(s)	121
MluCI	AATT	1 cut(s)	227
MlyI	GAGTC	1 cut(s)	114
MmeI	TCCRAC	1 cut(s)	264
MnlI	CCTC	3 cut(s)	66, 265, 276
MseI	TTAA	1 cut(s)	113
MspCI	CTTAAG	1 cut(s)	112
MwoI	GCNNNNNNNGC	1 cut(s)	95
NdeII	GATC	2 cut(s)	274, 285
NmuCI	GTSAC	2 cut(s)	123, 148
PflFI	GACNNNGTC	1 cut(s)	14
PleI	GAGTC	1 cut(s)	113
PpsI	GAGTC	1 cut(s)	113
PspEI	GGTNACC	1 cut(s)	123
PsuI	RGATCY	2 cut(s)	274, 285
PsyI	GACNNNGTC	1 cut(s)	14
SaqAI	TTAA	1 cut(s)	113
Sau3AI	GATC	2 cut(s)	274, 285
SchI	GAGTC	1 cut(s)	114
SduI	GDGCHC	1 cut(s)	121
SetI	ASST	1 cut(s)	100
SfcI	CTRYAG	1 cut(s)	258
SmlI	CTYRAG	1 cut(s)	112
SmoI	CTYRAG	1 cut(s)	112
Sse9I	AATT	1 cut(s)	227
SspMI	CTAG	1 cut(s)	248
TaaI	ACNGT	1 cut(s)	218
TaqII	GACCGA	1 cut(s)	111
TasI	AATT	1 cut(s)	227
Tru1I	TTAA	1 cut(s)	113
Tru9I	TTAA	1 cut(s)	113
TscAI	CASTG	1 cut(s)	46
TseFI	GTSAC	2 cut(s)	123, 148
Tsp45I	GTSAC	2 cut(s)	123, 148
TspRI	CASTG	1 cut(s)	46
Tth111I	GACNNNGTC	1 cut(s)	14
Vha464I	CTTAAG	1 cut(s)	112
XspI	CTAG	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.