Rmu_sc0019537.1_g000001

transport protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0019537.1
OG0010756
Physical Location & Seq
Forward (+)
23 .. 376
354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0019537.1_g000001.1.cds

Sequence Viewer

Length: 354 bp
atgagtttctttctcaaaaagccgaagccggccaccggagtcattgccggccccagggacgggttgtcctctgagagcattgcaaggtttctattgccggcatctgagtgcgaatttgcgctcaattcggtgttggaggagttgcagagagatccttggcaggttccggcggatcagcgagccaccaggtgcaccagcaccgcgcttaatgttgcggcgagcttgttgggagcttgtgtgcctggttcaggagccagaattatggcattcataggtggaccatcgaccgaaggccagggtgctgtaagaattcctaactgcttgttatctttttttcttgttatagaaacttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
Gelsolin Sec23_BS Sec23_helical Sec23_trunk zf-Sec23_Sec24

Protein Analysis

117

Amino Acids

12.34

Weight (kDa)

6.2

Isoelectric Point (pI)

48.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 151
AccII CGCG 1 cut(s) 203
AciI CCGC 3 cut(s) 170, 201, 215
AclWI GGATC 2 cut(s) 146, 180
AcoI YGGCCR 1 cut(s) 30
AcsI RAATTY 2 cut(s) 113, 309
AdeI CACNNNGTG 1 cut(s) 189
AfiI CCNNNNNNNGG 5 cut(s) 35, 54, 59, 60, 248
AhdI GACNNNNNGTC 1 cut(s) 64
AjnI CCWGG 4 cut(s) 53, 185, 241, 294
AluBI AGCT 2 cut(s) 222, 233
AluI AGCT 2 cut(s) 222, 233
Alw21I GWGCWC 1 cut(s) 194
Alw44I GTGCAC 1 cut(s) 190
AlwI GGATC 2 cut(s) 146, 180
AoxI GGCC 3 cut(s) 30, 49, 292
ApaLI GTGCAC 1 cut(s) 190
ApoI RAATTY 2 cut(s) 113, 309
AspLEI GCGC 2 cut(s) 121, 205
AspS9I GGNCC 2 cut(s) 50, 278
AvaII GGWCC 1 cut(s) 278
BaeGI GKGCMC 1 cut(s) 194
Bbv12I GWGCWC 1 cut(s) 194
BccI CCATC 1 cut(s) 289
BciT130I CCWGG 4 cut(s) 55, 187, 243, 296
BfuAI ACCTGC 1 cut(s) 151
BisI GCNGC 1 cut(s) 216
BlsI GCNGC 1 cut(s) 217
Bme1390I CCNGG 4 cut(s) 55, 187, 243, 296
Bme18I GGWCC 1 cut(s) 278
BmeRI GACNNNNNGTC 1 cut(s) 64
BmgT120I GGNCC 2 cut(s) 50, 278
BmiI GGNNCC 3 cut(s) 52, 165, 253
BmrFI CCNGG 4 cut(s) 55, 187, 243, 296
BmsI GCATC 1 cut(s) 110
BsaJI CCNNGG 4 cut(s) 53, 54, 155, 295
BsaWI WCCGGW 1 cut(s) 35
BsaXI ACNNNNNCTCC 2 cut(s) 222, 252
Bsc4I CCNNNNNNNGG 5 cut(s) 35, 54, 59, 60, 248
Bse118I RCCGGY 3 cut(s) 28, 47, 97
Bse3DI GCAATG 2 cut(s) 42, 78
BseBI CCWGG 4 cut(s) 55, 187, 243, 296
BseDI CCNNGG 4 cut(s) 53, 54, 155, 295
BseLI CCNNNNNNNGG 5 cut(s) 35, 54, 59, 60, 248
BseMI GCAATG 2 cut(s) 42, 78
BseMII CTCAG 2 cut(s) 63, 96
BseRI GAGGAG 1 cut(s) 152
BseSI GKGCMC 1 cut(s) 194
Bsh1236I CGCG 1 cut(s) 203
Bsh1285I CGRYCG 1 cut(s) 288
BshFI GGCC 3 cut(s) 32, 51, 294
BsiEI CGRYCG 1 cut(s) 288
BsiHKAI GWGCWC 1 cut(s) 194
BsiSI CCGG 5 cut(s) 29, 36, 48, 98, 167
BslFI GGGAC 1 cut(s) 71
BslI CCNNNNNNNGG 5 cut(s) 35, 54, 59, 60, 248
BsmFI GGGAC 1 cut(s) 71
BsmI GAATGC 1 cut(s) 266
BsnI GGCC 3 cut(s) 32, 51, 294
Bsp1286I GDGCHC 1 cut(s) 194
Bsp143I GATC 2 cut(s) 151, 172
BspACI CCGC 3 cut(s) 170, 201, 215
BspANI GGCC 3 cut(s) 32, 51, 294
BspCNI CTCAG 2 cut(s) 64, 97
BspFNI CGCG 1 cut(s) 203
BspLI GGNNCC 3 cut(s) 52, 165, 253
BspMI ACCTGC 1 cut(s) 151
BspPI GGATC 2 cut(s) 146, 180
BsrDI GCAATG 2 cut(s) 42, 78
BsrFI RCCGGY 3 cut(s) 28, 47, 97
BssAI RCCGGY 3 cut(s) 28, 47, 97
BssECI CCNNGG 4 cut(s) 53, 54, 155, 295
BssMI GATC 2 cut(s) 151, 172
BssT1I CCWWGG 1 cut(s) 155
Bst2UI CCWGG 4 cut(s) 55, 187, 243, 296
BstC8I GCNNGC 5 cut(s) 30, 49, 99, 180, 220
BstDEI CTNAG 3 cut(s) 72, 105, 351
BstENI CCTNNNNNAGG 1 cut(s) 246
BstFNI CGCG 1 cut(s) 203
BstHHI GCGC 2 cut(s) 121, 205
BstKTI GATC 2 cut(s) 154, 175
BstMBI GATC 2 cut(s) 151, 172
BstMCI CGRYCG 1 cut(s) 288
BstNI CCWGG 4 cut(s) 55, 187, 243, 296
BstSCI CCNGG 4 cut(s) 53, 185, 241, 294
BstSLI GKGCMC 1 cut(s) 194
BstUI CGCG 1 cut(s) 203
BstX2I RGATCY 1 cut(s) 151
BstXI CCANNNNNNTGG 1 cut(s) 262
BstYI RGATCY 1 cut(s) 151
BsuRI GGCC 3 cut(s) 32, 51, 294
BveI ACCTGC 1 cut(s) 151
Cac8I GCNNGC 5 cut(s) 30, 49, 99, 180, 220
CfoI GCGC 2 cut(s) 121, 205
Cfr10I RCCGGY 3 cut(s) 28, 47, 97
Cfr13I GGNCC 2 cut(s) 50, 278
CsiI ACCWGGT 1 cut(s) 185
CviJI RGCY 9 cut(s) 22, 28, 32, 51, 182, 222, 233, 254, 294
CviKI_1 RGCY 9 cut(s) 22, 28, 32, 51, 182, 222, 233, 254, 294
DdeI CTNAG 3 cut(s) 72, 105, 351
DpnI GATC 2 cut(s) 153, 174
DpnII GATC 2 cut(s) 151, 172
DraIII CACNNNGTG 1 cut(s) 189
DriI GACNNNNNGTC 1 cut(s) 64
EaeI YGGCCR 1 cut(s) 30
Eam1105I GACNNNNNGTC 1 cut(s) 64
EciI GGCGGA 1 cut(s) 185
Eco130I CCWWGG 1 cut(s) 155
Eco47I GGWCC 1 cut(s) 278
EcoNI CCTNNNNNAGG 1 cut(s) 246
EcoRI GAATTC 1 cut(s) 309
EcoRII CCWGG 4 cut(s) 53, 185, 241, 294
EcoT14I CCWWGG 1 cut(s) 155
ErhI CCWWGG 1 cut(s) 155
FaiI YATR 3 cut(s) 263, 272, 344
FaqI GGGAC 1 cut(s) 71
Fnu4HI GCNGC 1 cut(s) 216
Fsp4HI GCNGC 1 cut(s) 216
GlaI GCGC 2 cut(s) 120, 204
GluI GCNGC 1 cut(s) 216
HaeIII GGCC 3 cut(s) 32, 51, 294
HapII CCGG 5 cut(s) 29, 36, 48, 98, 167
HhaI GCGC 2 cut(s) 121, 205
Hin6I GCGC 2 cut(s) 119, 203
HinP1I GCGC 2 cut(s) 119, 203
HinfI GANTC 1 cut(s) 39
HpaII CCGG 5 cut(s) 29, 36, 48, 98, 167
Hpy166II GTNNAC 2 cut(s) 192, 278
Hpy188I TCNGA 2 cut(s) 73, 106
Hpy188III TCNNGA 1 cut(s) 249
Hpy8I GTNNAC 2 cut(s) 192, 278
HpyAV CCTTC 1 cut(s) 284
HpyCH4V TGCA 3 cut(s) 83, 145, 192
HpyF3I CTNAG 3 cut(s) 72, 105, 351
HspAI GCGC 2 cut(s) 119, 203
KroI GCCGGC 3 cut(s) 28, 47, 97
KroNI GCCGGC 3 cut(s) 30, 49, 99
Kzo9I GATC 2 cut(s) 151, 172
LmnI GCTCC 2 cut(s) 230, 251
LweI GCATC 1 cut(s) 110
MabI ACCWGGT 1 cut(s) 185
MalI GATC 2 cut(s) 153, 174
MboI GATC 2 cut(s) 151, 172
MflI RGATCY 1 cut(s) 151
MhlI GDGCHC 1 cut(s) 194
MluCI AATT 4 cut(s) 113, 124, 258, 309
MlyI GAGTC 1 cut(s) 48
MmeI TCCRAC 1 cut(s) 114
MnlI CCTC 2 cut(s) 79, 130
MroNI GCCGGC 3 cut(s) 28, 47, 97
MseI TTAA 1 cut(s) 207
MslI CAYNNNNRTG 1 cut(s) 106
MspI CCGG 5 cut(s) 29, 36, 48, 98, 167
MspR9I CCNGG 4 cut(s) 55, 187, 243, 296
Mva1269I GAATGC 1 cut(s) 266
MvaI CCWGG 4 cut(s) 55, 187, 243, 296
MvnI CGCG 1 cut(s) 203
NaeI GCCGGC 3 cut(s) 30, 49, 99
NdeII GATC 2 cut(s) 151, 172
NgoMIV GCCGGC 3 cut(s) 28, 47, 97
NlaIV GGNNCC 3 cut(s) 52, 165, 253
PasI CCCWGGG 1 cut(s) 54
PctI GAATGC 1 cut(s) 266
PdiI GCCGGC 3 cut(s) 30, 49, 99
PkrI GCNGC 1 cut(s) 217
PleI GAGTC 1 cut(s) 47
PpsI GAGTC 1 cut(s) 47
Psp6I CCWGG 4 cut(s) 53, 185, 241, 294
PspGI CCWGG 4 cut(s) 53, 185, 241, 294
PspN4I GGNNCC 3 cut(s) 52, 165, 253
PspPI GGNCC 2 cut(s) 50, 278
PsuI RGATCY 1 cut(s) 151
RseI CAYNNNNRTG 1 cut(s) 106
SaqAI TTAA 1 cut(s) 207
SatI GCNGC 1 cut(s) 216
Sau3AI GATC 2 cut(s) 151, 172
Sau96I GGNCC 2 cut(s) 50, 278
SchI GAGTC 1 cut(s) 48
ScrFI CCNGG 4 cut(s) 55, 187, 243, 296
SduI GDGCHC 1 cut(s) 194
SetI ASST 6 cut(s) 89, 165, 191, 224, 235, 277
SexAI ACCWGGT 1 cut(s) 185
SfaNI GCATC 1 cut(s) 110
SinI GGWCC 1 cut(s) 278
SmiMI CAYNNNNRTG 1 cut(s) 106
Sse9I AATT 4 cut(s) 113, 124, 258, 309
SsiI CCGC 3 cut(s) 170, 201, 215
StyD4I CCNGG 4 cut(s) 53, 185, 241, 294
StyI CCWWGG 1 cut(s) 155
TaqI TCGA 1 cut(s) 284
TaqII GACCGA 1 cut(s) 302
TasI AATT 4 cut(s) 113, 124, 258, 309
TauI GCSGC 1 cut(s) 218
Tru1I TTAA 1 cut(s) 207
Tru9I TTAA 1 cut(s) 207
TspDTI ATGAA 1 cut(s) 259
VneI GTGCAC 1 cut(s) 190
VpaK11BI GGWCC 1 cut(s) 278
XagI CCTNNNNNAGG 1 cut(s) 246
XapI RAATTY 2 cut(s) 113, 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.