Rmu_sc0021402.1_g000002

phosphatase 2c

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0021402.1
OG0016726
Physical Location & Seq
Forward (+)
1646 .. 3279
1634 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0021402.1_g000002.1.cds

Sequence Viewer

Length: 720 bp
atgcatgaagtcatagcacaagagtgggatcgggagacggttgatggctgtgaatggcaaaggaggtgggagactactttcttagttgggttcgagaaggctgacagtgaggtcctcacagaggcagttgcacctgagatggttggatcaactgcagttgtagttgtcctatctggttgtcagatcatcacatcgaactgtggtgactctagggcagttcttttccgagggacagaaacaatcccattaactgttgatcagaagcctgatagagaagacgaactcaagagaattgaaggagagggagggaaagtcataaactggaatggcgcaagggtgcttggagttcttgccatgtcgagagctataggtgatcgatatctaaggccttggataattccagttcctgagattacattcacagccaggactgatgaggatgagtgtttgattttggcaagtgatggactgtgggatgtaatgactaatgaagaggttggggaggtggctagacatattttaagaaggcggcgaaggtccatgtcttctagtactgatgatatttctgcagcacaagctgttgctgatcatctgaccgaaattgcatatggaagaaatagttccgacaacatatccattatagttgttgatttcaaaacgaaaagaaaacgtcagccaaaatccagttctattctcacaccttttgaaattcagaggtga

Protein Analysis

239

Amino Acids

26.82

Weight (kDa)

5.02

Isoelectric Point (pI)

62.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016726)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g06040
malus_domestica MD15G1195800.v1.1
prunus_persica Prupe.7G220600_v2.0.a1
pyrus_communis pycom15g17510
rosa_chinensis RchiOBHm_Chr2g0091801
rosa_laevigata RLG00000016252
rosa_multiflora Rmu_sc0021402.1_g000002
rosa_roxburghii Rroxscaffold_2G00149730
rosa_rugosa Rorug02G0021000 Rorug02G0021100
rosa_samantha Rh2BG065200 Rh2CG066600 Rh2DG064800
rosa_wichuraiana Rw2G005500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 110
AciI CCGC 1 cut(s) 529
AclWI GGATC 2 cut(s) 36, 154
AcsI RAATTY 1 cut(s) 708
AfaI GTAC 1 cut(s) 553
AfiI CCNNNNNNNGG 1 cut(s) 121
AgsI TTSAA 3 cut(s) 296, 655, 707
AjnI CCWGG 1 cut(s) 425
AjuI GAANNNNNNNTTGG 2 cut(s) 670, 702
AleI CACNNNNGTG 1 cut(s) 22
AluBI AGCT 2 cut(s) 365, 578
AluI AGCT 2 cut(s) 365, 578
Alw26I GTCTC 2 cut(s) 29, 65
AlwI GGATC 2 cut(s) 36, 154
AlwNI CAGNNNCTG 1 cut(s) 407
AoxI GGCC 1 cut(s) 386
ApeKI GCWGC 1 cut(s) 569
ApoI RAATTY 1 cut(s) 708
Asp700I GAANNNNTTC 1 cut(s) 619
AspLEI GCGC 1 cut(s) 332
AspS9I GGNCC 2 cut(s) 112, 537
AsuHPI GGTGA 2 cut(s) 215, 383
AvaII GGWCC 2 cut(s) 112, 537
BbsI GAAGAC 2 cut(s) 282, 537
BbvI GCAGC 1 cut(s) 581
BccI CCATC 3 cut(s) 38, 133, 458
BciT130I CCWGG 1 cut(s) 427
BclI TGATCA 2 cut(s) 256, 586
BcoDI GTCTC 2 cut(s) 29, 65
BfaI CTAG 3 cut(s) 210, 510, 549
BfmI CTRYAG 3 cut(s) 153, 366, 567
BisI GCNGC 2 cut(s) 530, 570
BlsI GCNGC 2 cut(s) 531, 571
BmcAI AGTACT 1 cut(s) 553
Bme1390I CCNGG 1 cut(s) 427
Bme18I GGWCC 2 cut(s) 112, 537
BmgT120I GGNCC 2 cut(s) 112, 537
BmrFI CCNGG 1 cut(s) 427
BpiI GAAGAC 2 cut(s) 282, 537
BpuEI CTTGAG 1 cut(s) 269
Bsa29I ATCGAT 1 cut(s) 376
BsaBI GATNNNNATC 1 cut(s) 378
BsaJI CCNNGG 2 cut(s) 226, 389
BsaXI ACNNNNNCTCC 2 cut(s) 297, 327
Bsc4I CCNNNNNNNGG 1 cut(s) 121
Bse1I ACTGG 3 cut(s) 326, 401, 684
Bse8I GATNNNNATC 1 cut(s) 378
BseBI CCWGG 1 cut(s) 427
BseCI ATCGAT 1 cut(s) 376
BseDI CCNNGG 2 cut(s) 226, 389
BseGI GGATG 2 cut(s) 445, 481
BseJI GATNNNNATC 1 cut(s) 378
BseLI CCNNNNNNNGG 1 cut(s) 121
BseMII CTCAG 2 cut(s) 126, 399
BseNI ACTGG 3 cut(s) 326, 401, 684
BseXI GCAGC 1 cut(s) 581
BshFI GGCC 1 cut(s) 388
BshVI ATCGAT 1 cut(s) 376
BslFI GGGAC 1 cut(s) 244
BslI CCNNNNNNNGG 1 cut(s) 121
BsmAI GTCTC 2 cut(s) 29, 65
BsmBI CGTCTC 1 cut(s) 29
BsmFI GGGAC 1 cut(s) 244
BsnI GGCC 1 cut(s) 388
Bsp143I GATC 6 cut(s) 28, 146, 183, 256, 373, 586
BspACI CCGC 1 cut(s) 529
BspANI GGCC 1 cut(s) 388
BspCNI CTCAG 2 cut(s) 127, 400
BspDI ATCGAT 1 cut(s) 376
BspMAI CTGCAG 2 cut(s) 157, 571
BspPI GGATC 2 cut(s) 36, 154
BsrI ACTGG 3 cut(s) 326, 401, 684
BssECI CCNNGG 2 cut(s) 226, 389
BssMI GATC 6 cut(s) 28, 146, 183, 256, 373, 586
BssT1I CCWWGG 1 cut(s) 389
Bst2UI CCWGG 1 cut(s) 427
Bst4CI ACNGT 5 cut(s) 40, 107, 200, 253, 471
Bst6I CTCTTC 1 cut(s) 486
BstDEI CTNAG 4 cut(s) 82, 135, 383, 408
BstENI CCTNNNNNAGG 1 cut(s) 119
BstF5I GGATG 2 cut(s) 445, 481
BstHHI GCGC 1 cut(s) 332
BstKTI GATC 6 cut(s) 31, 149, 186, 259, 376, 589
BstMAI GTCTC 2 cut(s) 29, 65
BstMBI GATC 6 cut(s) 28, 146, 183, 256, 373, 586
BstMWI GCNNNNNNNGC 1 cut(s) 575
BstNI CCWGG 1 cut(s) 427
BstSCI CCNGG 1 cut(s) 425
BstSFI CTRYAG 3 cut(s) 153, 366, 567
BstV1I GCAGC 1 cut(s) 581
BstV2I GAAGAC 2 cut(s) 282, 537
Bsu15I ATCGAT 1 cut(s) 376
BsuRI GGCC 1 cut(s) 388
BsuTUI ATCGAT 1 cut(s) 376
BtsCI GGATG 2 cut(s) 445, 481
BtsIMutI CAGTG 1 cut(s) 112
CaiI CAGNNNCTG 1 cut(s) 407
CfoI GCGC 1 cut(s) 332
Cfr13I GGNCC 2 cut(s) 112, 537
ClaI ATCGAT 1 cut(s) 376
Csp6I GTAC 1 cut(s) 552
CspCI CAANNNNNGTGG 2 cut(s) 47, 82
CviAII CATG 3 cut(s) 5, 355, 541
CviJI RGCY 9 cut(s) 48, 101, 265, 365, 388, 425, 509, 578, 676
CviKI_1 RGCY 9 cut(s) 48, 101, 265, 365, 388, 425, 509, 578, 676
CviQI GTAC 1 cut(s) 552
DdeI CTNAG 4 cut(s) 82, 135, 383, 408
DpnI GATC 6 cut(s) 30, 148, 185, 258, 375, 588
DpnII GATC 6 cut(s) 28, 146, 183, 256, 373, 586
DrdI GACNNNNNNGTC 1 cut(s) 110
DseDI GACNNNNNNGTC 1 cut(s) 110
Eam1104I CTCTTC 1 cut(s) 486
EarI CTCTTC 1 cut(s) 486
Eco130I CCWWGG 1 cut(s) 389
Eco147I AGGCCT 1 cut(s) 388
Eco32I GATATC 1 cut(s) 380
Eco47I GGWCC 2 cut(s) 112, 537
EcoNI CCTNNNNNAGG 1 cut(s) 119
EcoO109I RGGNCCY 1 cut(s) 112
EcoRII CCWGG 1 cut(s) 425
EcoRV GATATC 1 cut(s) 380
EcoT14I CCWWGG 1 cut(s) 389
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 389
Esp3I CGTCTC 1 cut(s) 29
FaeI CATG 3 cut(s) 8, 358, 544
FaqI GGGAC 1 cut(s) 244
FatI CATG 3 cut(s) 4, 354, 540
FauNDI CATATG 1 cut(s) 607
FbaI TGATCA 2 cut(s) 256, 586
Fnu4HI GCNGC 2 cut(s) 530, 570
FokI GGATG 2 cut(s) 452, 488
Fsp4HI GCNGC 2 cut(s) 530, 570
FspBI CTAG 3 cut(s) 210, 510, 549
GlaI GCGC 1 cut(s) 331
GluI GCNGC 2 cut(s) 530, 570
HaeIII GGCC 1 cut(s) 388
HhaI GCGC 1 cut(s) 332
Hin1II CATG 3 cut(s) 8, 358, 544
Hin6I GCGC 1 cut(s) 330
HinP1I GCGC 1 cut(s) 330
HinfI GANTC 1 cut(s) 206
HphI GGTGA 2 cut(s) 215, 383
Hpy188I TCNGA 6 cut(s) 183, 227, 261, 594, 625, 714
Hpy188III TCNNGA 5 cut(s) 32, 94, 286, 360, 407
HpyAV CCTTC 4 cut(s) 91, 290, 519, 528
HpyCH4III ACNGT 5 cut(s) 40, 107, 200, 253, 471
HpyCH4IV ACGT 1 cut(s) 670
HpyCH4V TGCA 5 cut(s) 4, 131, 155, 569, 605
HpyF10VI GCNNNNNNNGC 1 cut(s) 575
HpyF3I CTNAG 4 cut(s) 82, 135, 383, 408
HpySE526I ACGT 1 cut(s) 670
Hsp92II CATG 3 cut(s) 8, 358, 544
HspAI GCGC 1 cut(s) 330
Ksp22I TGATCA 2 cut(s) 256, 586
Kzo9I GATC 6 cut(s) 28, 146, 183, 256, 373, 586
LpnPI CCDG 9 cut(s) 147, 159, 279, 307, 412, 414, 420, 439, 697
Lsp1109I GCAGC 1 cut(s) 581
MaeI CTAG 3 cut(s) 210, 510, 549
MaeII ACGT 1 cut(s) 670
MaeIII GTNAC 1 cut(s) 203
MalI GATC 6 cut(s) 30, 148, 185, 258, 375, 588
MboI GATC 6 cut(s) 28, 146, 183, 256, 373, 586
MboII GAAGA 4 cut(s) 287, 503, 537, 624
MluCI AATT 4 cut(s) 291, 396, 600, 708
MlyI GAGTC 1 cut(s) 200
MmeI TCCRAC 2 cut(s) 124, 648
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 619
MseI TTAA 2 cut(s) 248, 521
MslI CAYNNNNRTG 1 cut(s) 22
MspR9I CCNGG 1 cut(s) 427
MvaI CCWGG 1 cut(s) 427
MwoI GCNNNNNNNGC 1 cut(s) 575
NdeI CATATG 1 cut(s) 607
NdeII GATC 6 cut(s) 28, 146, 183, 256, 373, 586
NlaIII CATG 3 cut(s) 8, 358, 544
NmuCI GTSAC 1 cut(s) 203
NsiI ATGCAT 1 cut(s) 6
OliI CACNNNNGTG 1 cut(s) 22
PceI AGGCCT 1 cut(s) 388
PdmI GAANNNNTTC 1 cut(s) 619
PkrI GCNGC 2 cut(s) 531, 571
PleI GAGTC 1 cut(s) 200
PpsI GAGTC 1 cut(s) 200
PpuMI RGGWCCY 1 cut(s) 112
Psp5II RGGWCCY 1 cut(s) 112
Psp6I CCWGG 1 cut(s) 425
PspGI CCWGG 1 cut(s) 425
PspPI GGNCC 2 cut(s) 112, 537
PspPPI RGGWCCY 1 cut(s) 112
PstI CTGCAG 2 cut(s) 157, 571
PstNI CAGNNNCTG 1 cut(s) 407
RsaI GTAC 1 cut(s) 553
RsaNI GTAC 1 cut(s) 552
RseI CAYNNNNRTG 1 cut(s) 22
SaqAI TTAA 2 cut(s) 248, 521
SatI GCNGC 2 cut(s) 530, 570
Sau3AI GATC 6 cut(s) 28, 146, 183, 256, 373, 586
Sau96I GGNCC 2 cut(s) 112, 537
ScaI AGTACT 1 cut(s) 553
SchI GAGTC 1 cut(s) 200
ScrFI CCNGG 1 cut(s) 427
SfcI CTRYAG 3 cut(s) 153, 366, 567
SinI GGWCC 2 cut(s) 112, 537
SmiMI CAYNNNNRTG 1 cut(s) 22
SmlI CTYRAG 1 cut(s) 284
SmoI CTYRAG 1 cut(s) 284
Sse9I AATT 4 cut(s) 291, 396, 600, 708
SseBI AGGCCT 1 cut(s) 388
SsiI CCGC 1 cut(s) 529
SspMI CTAG 3 cut(s) 210, 510, 549
StuI AGGCCT 1 cut(s) 388
StyD4I CCNGG 1 cut(s) 425
StyI CCWWGG 1 cut(s) 389
TaaI ACNGT 5 cut(s) 40, 107, 200, 253, 471
TaiI ACGT 1 cut(s) 673
TaqI TCGA 4 cut(s) 93, 194, 359, 376
TaqII GACCGA 1 cut(s) 611
TasI AATT 4 cut(s) 291, 396, 600, 708
TatI WGTACW 1 cut(s) 551
TauI GCSGC 1 cut(s) 532
Tru1I TTAA 2 cut(s) 248, 521
Tru9I TTAA 2 cut(s) 248, 521
TscAI CASTG 1 cut(s) 112
TseFI GTSAC 1 cut(s) 203
TseI GCWGC 1 cut(s) 569
Tsp45I GTSAC 1 cut(s) 203
TspDTI ATGAA 2 cut(s) 21, 504
TspRI CASTG 1 cut(s) 112
VpaK11BI GGWCC 2 cut(s) 112, 537
XagI CCTNNNNNAGG 1 cut(s) 119
XapI RAATTY 1 cut(s) 708
XmnI GAANNNNTTC 1 cut(s) 619
XspI CTAG 3 cut(s) 210, 510, 549
ZrmI AGTACT 1 cut(s) 553
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.