Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0022110.1

Orthogroup ID

OG0017947

Physical Location & Seq

Genomic Coordinates Forward (+)

2169 .. 7537

Gene Structure 5369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0022110.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

atgatggatggatggtggaatggccagcacttgctcagagcggcgggcacgccaactgtggtgggccgacaaggttttggcttgcgagatggtggcgcgaagatcacaatagtctgcactcttagcttgggcagtgaagacgaggacggagacgagagaggggaagaagaagaggttaaaagaaaagagagtagagcaatcaaaatgtttccaggcatgtttatgaagaagcccgacaagaaggaggccttgaagcagctcaaggtccacgtcggcttgttcggggcttgggtcgtcgcgatccgagtcactccttaccttcttcacgctctttatggcgagaaggaggagctcaagctcgcgatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

122

Amino Acids

13.61

Weight (kDa)

7.86

Isoelectric Point (pI)

31.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017947)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49410
malus_domestica	MD00G1073700.v1.1 MD10G1085000.v1.1 MD11G1171200.v1.1
prunus_persica	Prupe.8G107900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0262021
rosa_multiflora	Rmu_sc0022110.1_g000001
rosa_roxburghii	Rroxscaffold_7G00207750
rosa_rugosa	Rorug05G0594900 Rorug05G0595000
rosa_wichuraiana	Rw6G009810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	41
AccII	CGCG	3 cut(s)	98, 299, 362
AciI	CCGC	2 cut(s)	41, 44
AclWI	GGATC	1 cut(s)	295
AcoI	YGGCCR	1 cut(s)	22
AgsI	TTSAA	1 cut(s)	253
AjiI	CACGTC	1 cut(s)	271
AjnI	CCWGG	1 cut(s)	211
AluBI	AGCT	4 cut(s)	126, 259, 352, 358
AluI	AGCT	4 cut(s)	126, 259, 352, 358
Alw21I	GWGCWC	1 cut(s)	354
Alw26I	GTCTC	1 cut(s)	144
AlwI	GGATC	1 cut(s)	295
AoxI	GGCC	3 cut(s)	22, 64, 246
ApeKI	GCWGC	1 cut(s)	256
AspLEI	GCGC	1 cut(s)	98
AspS9I	GGNCC	2 cut(s)	64, 265
AvaII	GGWCC	1 cut(s)	265
BaeGI	GKGCMC	1 cut(s)	50
BalI	TGGCCA	1 cut(s)	24
BanII	GRGCYC	1 cut(s)	354
BbsI	GAAGAC	1 cut(s)	144
Bbv12I	GWGCWC	1 cut(s)	354
BbvI	GCAGC	1 cut(s)	268
BccI	CCATC	3 cut(s)	2, 6, 83
BciT130I	CCWGG	1 cut(s)	213
BcoDI	GTCTC	1 cut(s)	144
BisI	GCNGC	2 cut(s)	42, 257
BlsI	GCNGC	2 cut(s)	43, 258
Bme1390I	CCNGG	1 cut(s)	213
Bme18I	GGWCC	1 cut(s)	265
BmgBI	CACGTC	1 cut(s)	271
BmgT120I	GGNCC	2 cut(s)	64, 265
BmrFI	CCNGG	1 cut(s)	213
BpiI	GAAGAC	1 cut(s)	144
BpuEI	CTTGAG	2 cut(s)	245, 338
BseBI	CCWGG	1 cut(s)	213
BseGI	GGATG	2 cut(s)	13, 17
BseMII	CTCAG	1 cut(s)	49
BseRI	GAGGAG	1 cut(s)	362
BseSI	GKGCMC	1 cut(s)	50
BseXI	GCAGC	1 cut(s)	268
BsgI	GTGCAG	1 cut(s)	100
Bsh1236I	CGCG	3 cut(s)	98, 299, 362
BshFI	GGCC	3 cut(s)	24, 66, 248
BsiHKAI	GWGCWC	1 cut(s)	354
BsmAI	GTCTC	1 cut(s)	144
BsmBI	CGTCTC	1 cut(s)	144
BsnI	GGCC	3 cut(s)	24, 66, 248
Bsp1286I	GDGCHC	2 cut(s)	50, 354
Bsp143I	GATC	2 cut(s)	102, 300
Bsp68I	TCGCGA	2 cut(s)	299, 362
BspACI	CCGC	2 cut(s)	41, 44
BspANI	GGCC	3 cut(s)	24, 66, 248
BspCNI	CTCAG	1 cut(s)	48
BspFNI	CGCG	3 cut(s)	98, 299, 362
BspPI	GGATC	1 cut(s)	295
BsrBI	CCGCTC	1 cut(s)	41
BssMI	GATC	2 cut(s)	102, 300
Bst2UI	CCWGG	1 cut(s)	213
Bst4CI	ACNGT	1 cut(s)	58
Bst6I	CTCTTC	1 cut(s)	165
BstC8I	GCNNGC	5 cut(s)	26, 46, 50, 83, 360
BstDEI	CTNAG	2 cut(s)	35, 122
BstF5I	GGATG	2 cut(s)	13, 17
BstFNI	CGCG	3 cut(s)	98, 299, 362
BstHHI	GCGC	1 cut(s)	98
BstKTI	GATC	2 cut(s)	105, 303
BstMAI	GTCTC	1 cut(s)	144
BstMBI	GATC	2 cut(s)	102, 300
BstMWI	GCNNNNNNNGC	1 cut(s)	123
BstNI	CCWGG	1 cut(s)	213
BstNSI	RCATGY	1 cut(s)	220
BstSCI	CCNGG	1 cut(s)	211
BstSLI	GKGCMC	1 cut(s)	50
BstUI	CGCG	3 cut(s)	98, 299, 362
BstV1I	GCAGC	1 cut(s)	268
BstV2I	GAAGAC	1 cut(s)	144
BsuRI	GGCC	3 cut(s)	24, 66, 248
BtrI	CACGTC	1 cut(s)	271
BtsCI	GGATG	2 cut(s)	13, 17
BtsI	GCAGTG	1 cut(s)	139
BtsIMutI	CAGTG	1 cut(s)	139
BtuMI	TCGCGA	2 cut(s)	299, 362
Cac8I	GCNNGC	5 cut(s)	26, 46, 50, 83, 360
CfoI	GCGC	1 cut(s)	98
Cfr13I	GGNCC	2 cut(s)	64, 265
CspCI	CAANNNNNGTGG	2 cut(s)	42, 77
CviAII	CATG	1 cut(s)	217
DdeI	CTNAG	2 cut(s)	35, 122
DpnI	GATC	2 cut(s)	104, 302
DpnII	GATC	2 cut(s)	102, 300
EaeI	YGGCCR	1 cut(s)	22
Eam1104I	CTCTTC	1 cut(s)	165
EarI	CTCTTC	1 cut(s)	165
Ecl136II	GAGCTC	1 cut(s)	352
Eco147I	AGGCCT	1 cut(s)	248
Eco24I	GRGCYC	1 cut(s)	354
Eco47I	GGWCC	1 cut(s)	265
Eco53kI	GAGCTC	1 cut(s)	352
EcoICRI	GAGCTC	1 cut(s)	352
EcoRII	CCWGG	1 cut(s)	211
EcoT38I	GRGCYC	1 cut(s)	354
Esp3I	CGTCTC	1 cut(s)	144
FaeI	CATG	1 cut(s)	220
FaiI	YATR	3 cut(s)	218, 224, 336
FalI	AAGNNNNNCTT	2 cut(s)	233, 265
FatI	CATG	1 cut(s)	216
FauI	CCCGC	1 cut(s)	37
Fnu4HI	GCNGC	2 cut(s)	42, 257
FokI	GGATG	2 cut(s)	20, 24
FriOI	GRGCYC	1 cut(s)	354
Fsp4HI	GCNGC	2 cut(s)	42, 257
GlaI	GCGC	1 cut(s)	97
GluI	GCNGC	2 cut(s)	42, 257
HaeIII	GGCC	3 cut(s)	24, 66, 248
HhaI	GCGC	1 cut(s)	98
Hin1II	CATG	1 cut(s)	220
Hin6I	GCGC	1 cut(s)	96
HinP1I	GCGC	1 cut(s)	96
HinfI	GANTC	1 cut(s)	306
Hpy166II	GTNNAC	1 cut(s)	268
Hpy188I	TCNGA	2 cut(s)	38, 305
Hpy188III	TCNNGA	2 cut(s)	298, 361
Hpy8I	GTNNAC	1 cut(s)	268
Hpy99I	CGWCG	2 cut(s)	275, 299
HpyAV	CCTTC	3 cut(s)	235, 329, 337
HpyCH4III	ACNGT	1 cut(s)	58
HpyCH4IV	ACGT	1 cut(s)	270
HpyCH4V	TGCA	1 cut(s)	117
HpyF10VI	GCNNNNNNNGC	1 cut(s)	123
HpyF3I	CTNAG	2 cut(s)	35, 122
HpySE526I	ACGT	1 cut(s)	270
Hsp92II	CATG	1 cut(s)	220
HspAI	GCGC	1 cut(s)	96
Kzo9I	GATC	2 cut(s)	102, 300
LmnI	GCTCC	1 cut(s)	349
LpnPI	CCDG	3 cut(s)	38, 198, 225
Lsp1109I	GCAGC	1 cut(s)	268
MaeII	ACGT	1 cut(s)	270
MaeIII	GTNAC	1 cut(s)	307
MalI	GATC	2 cut(s)	104, 302
MbiI	CCGCTC	1 cut(s)	41
MboI	GATC	2 cut(s)	102, 300
MboII	GAAGA	7 cut(s)	112, 149, 176, 179, 182, 238, 314
MhlI	GDGCHC	2 cut(s)	50, 354
MlsI	TGGCCA	1 cut(s)	24
MluNI	TGGCCA	1 cut(s)	24
MlyI	GAGTC	1 cut(s)	315
MnlI	CCTC	5 cut(s)	136, 152, 166, 238, 340
Mox20I	TGGCCA	1 cut(s)	24
MscI	TGGCCA	1 cut(s)	24
MseI	TTAA	1 cut(s)	177
MslI	CAYNNNNRTG	1 cut(s)	221
Msp20I	TGGCCA	1 cut(s)	24
MspR9I	CCNGG	1 cut(s)	213
MvaI	CCWGG	1 cut(s)	213
MvnI	CGCG	3 cut(s)	98, 299, 362
MwoI	GCNNNNNNNGC	1 cut(s)	123
NdeII	GATC	2 cut(s)	102, 300
NlaIII	CATG	1 cut(s)	220
NmuCI	GTSAC	1 cut(s)	307
NruI	TCGCGA	2 cut(s)	299, 362
NspI	RCATGY	1 cut(s)	220
PceI	AGGCCT	1 cut(s)	248
PkrI	GCNGC	2 cut(s)	43, 258
PleI	GAGTC	1 cut(s)	314
PpsI	GAGTC	1 cut(s)	314
Psp124BI	GAGCTC	1 cut(s)	354
Psp6I	CCWGG	1 cut(s)	211
PspGI	CCWGG	1 cut(s)	211
PspPI	GGNCC	2 cut(s)	64, 265
RruI	TCGCGA	2 cut(s)	299, 362
RseI	CAYNNNNRTG	1 cut(s)	221
SacI	GAGCTC	1 cut(s)	354
SaqAI	TTAA	1 cut(s)	177
SatI	GCNGC	2 cut(s)	42, 257
Sau3AI	GATC	2 cut(s)	102, 300
Sau96I	GGNCC	2 cut(s)	64, 265
SchI	GAGTC	1 cut(s)	315
ScrFI	CCNGG	1 cut(s)	213
SduI	GDGCHC	2 cut(s)	50, 354
SetI	ASST	9 cut(s)	76, 128, 177, 261, 267, 273, 321, 354, 360
SinI	GGWCC	1 cut(s)	265
SmiMI	CAYNNNNRTG	1 cut(s)	221
SmlI	CTYRAG	2 cut(s)	260, 353
SmoI	CTYRAG	2 cut(s)	260, 353
SseBI	AGGCCT	1 cut(s)	248
SsiI	CCGC	2 cut(s)	41, 44
SstI	GAGCTC	1 cut(s)	354
StuI	AGGCCT	1 cut(s)	248
StyD4I	CCNGG	1 cut(s)	211
TaaI	ACNGT	1 cut(s)	58
TaiI	ACGT	1 cut(s)	273
TauI	GCSGC	1 cut(s)	44
Tru1I	TTAA	1 cut(s)	177
Tru9I	TTAA	1 cut(s)	177
TscAI	CASTG	1 cut(s)	139
TseFI	GTSAC	1 cut(s)	307
TseI	GCWGC	1 cut(s)	256
Tsp45I	GTSAC	1 cut(s)	307
TspDTI	ATGAA	1 cut(s)	239
TspGWI	ACGGA	1 cut(s)	162
TspRI	CASTG	1 cut(s)	139
VpaK11BI	GGWCC	1 cut(s)	265
XceI	RCATGY	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.