Rorug05G0595000

Mitochondrial import receptor subunit TOM6 homolog

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
79338135 .. 79338503
369 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0595000.1

Sequence Viewer

Length: 369 bp
ATGTCTCCTACCTACAACAATCTGGAAGGGCGAATACCAACAGGCACTCAGATACAAGGCTTTGATGTATCTGCGTTTGAAGGGAACGCGAAAGTTTGTGGTTTTCCACTTCCAAATGAGTGCCATTCAGTCAAGGGATTTGATGATCAAGATACGGACGATGAGCATAAAATTCCATCGTTTTACTTTTATATTCCGGGGGCTGGGATTGGGTTCATCGTAGGATTCTGGGGAGTCACTGGTTCATTGATTTTCAAAAAGACATGGAGATATGCATACTTCAGATTCCTTGATAAGGTGCAAGATATGTTCTGCGTACTGATTGTGCTGCGTATCAACAAGATGAAGAGAAGGGTTAATGCTAGCTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

13.89

Weight (kDa)

8.46

Isoelectric Point (pI)

37.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017947)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49410
malus_domestica MD00G1073700.v1.1 MD10G1085000.v1.1 MD11G1171200.v1.1
prunus_persica Prupe.8G107900_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0262021
rosa_multiflora Rmu_sc0022110.1_g000001
rosa_roxburghii Rroxscaffold_7G00207750
rosa_rugosa Rorug05G0594900 Rorug05G0595000
rosa_wichuraiana Rw6G009810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 89
AcsI RAATTY 1 cut(s) 171
AcuI CTGAAG 1 cut(s) 265
AfaI GTAC 1 cut(s) 318
AfiI CCNNNNNNNGG 2 cut(s) 203, 295
AgsI TTSAA 2 cut(s) 80, 256
AluBI AGCT 1 cut(s) 366
AluI AGCT 1 cut(s) 366
Alw26I GTCTC 1 cut(s) 9
ApeKI GCWGC 1 cut(s) 328
ApoI RAATTY 1 cut(s) 171
AsuC2I CCSGG 1 cut(s) 198
AsuNHI GCTAGC 1 cut(s) 362
BarI GAAGNNNNNNTAC 2 cut(s) 18, 50
BbvI GCAGC 1 cut(s) 315
BccI CCATC 1 cut(s) 184
BclI TGATCA 1 cut(s) 145
BcnI CCSGG 1 cut(s) 198
BcoDI GTCTC 1 cut(s) 9
BfaI CTAG 2 cut(s) 363, 367
BisI GCNGC 1 cut(s) 329
BlsI GCNGC 1 cut(s) 330
Bme1390I CCNGG 1 cut(s) 198
BmrFI CCNGG 1 cut(s) 198
BmtI GCTAGC 1 cut(s) 366
BpuMI CCSGG 1 cut(s) 198
BsaJI CCNNGG 1 cut(s) 197
Bsc4I CCNNNNNNNGG 2 cut(s) 203, 295
Bse1I ACTGG 1 cut(s) 244
BseDI CCNNGG 1 cut(s) 197
BseLI CCNNNNNNNGG 2 cut(s) 203, 295
BseMII CTCAG 1 cut(s) 62
BseNI ACTGG 1 cut(s) 244
BseXI GCAGC 1 cut(s) 315
BseYI CCCAGC 1 cut(s) 203
Bsh1236I CGCG 1 cut(s) 89
BsiSI CCGG 1 cut(s) 197
BslI CCNNNNNNNGG 2 cut(s) 203, 295
BsmAI GTCTC 1 cut(s) 9
Bsp143I GATC 1 cut(s) 145
BspCNI CTCAG 1 cut(s) 61
BspFNI CGCG 1 cut(s) 89
BspOI GCTAGC 1 cut(s) 366
BsrI ACTGG 1 cut(s) 244
BssECI CCNNGG 1 cut(s) 197
BssMI GATC 1 cut(s) 145
Bst6I CTCTTC 1 cut(s) 341
BstC8I GCNNGC 1 cut(s) 364
BstDEI CTNAG 1 cut(s) 48
BstENI CCTNNNNNAGG 1 cut(s) 293
BstFNI CGCG 1 cut(s) 89
BstKTI GATC 1 cut(s) 148
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 1 cut(s) 145
BstSCI CCNGG 1 cut(s) 196
BstUI CGCG 1 cut(s) 89
BstV1I GCAGC 1 cut(s) 315
BtsIMutI CAGTG 1 cut(s) 237
Cac8I GCNNGC 1 cut(s) 364
Csp6I GTAC 1 cut(s) 317
CviAII CATG 1 cut(s) 264
CviJI RGCY 3 cut(s) 60, 203, 366
CviKI_1 RGCY 3 cut(s) 60, 203, 366
CviQI GTAC 1 cut(s) 317
DdeI CTNAG 1 cut(s) 48
DpnI GATC 1 cut(s) 147
DpnII GATC 1 cut(s) 145
Eam1104I CTCTTC 1 cut(s) 341
EarI CTCTTC 1 cut(s) 341
Eco57I CTGAAG 1 cut(s) 265
EcoNI CCTNNNNNAGG 1 cut(s) 293
EcoT22I ATGCAT 1 cut(s) 277
FaeI CATG 1 cut(s) 267
FaiI YATR 6 cut(s) 168, 192, 265, 273, 277, 308
FatI CATG 1 cut(s) 263
FbaI TGATCA 1 cut(s) 145
Fnu4HI GCNGC 1 cut(s) 329
Fsp4HI GCNGC 1 cut(s) 329
FspBI CTAG 2 cut(s) 363, 367
GluI GCNGC 1 cut(s) 329
GsaI CCCAGC 1 cut(s) 207
HapII CCGG 1 cut(s) 197
Hin1II CATG 1 cut(s) 267
HinfI GANTC 3 cut(s) 225, 234, 285
HpaII CCGG 1 cut(s) 197
Hpy188I TCNGA 2 cut(s) 51, 284
Hpy188III TCNNGA 2 cut(s) 23, 149
HpyAV CCTTC 3 cut(s) 20, 74, 345
HpyCH4V TGCA 2 cut(s) 275, 301
HpyF3I CTNAG 1 cut(s) 48
Hsp92II CATG 1 cut(s) 267
Ksp22I TGATCA 1 cut(s) 145
Kzo9I GATC 1 cut(s) 145
LpnPI CCDG 6 cut(s) 8, 27, 189, 210, 214, 225
Lsp1109I GCAGC 1 cut(s) 315
MaeI CTAG 2 cut(s) 363, 367
MaeIII GTNAC 1 cut(s) 235
MalI GATC 1 cut(s) 147
MboI GATC 1 cut(s) 145
MboII GAAGA 1 cut(s) 358
MluCI AATT 1 cut(s) 171
MlyI GAGTC 1 cut(s) 243
Mph1103I ATGCAT 1 cut(s) 277
MseI TTAA 1 cut(s) 357
MspI CCGG 1 cut(s) 197
MspR9I CCNGG 1 cut(s) 198
MvnI CGCG 1 cut(s) 89
NciI CCSGG 1 cut(s) 198
NdeII GATC 1 cut(s) 145
NheI GCTAGC 1 cut(s) 362
NlaIII CATG 1 cut(s) 267
NmuCI GTSAC 1 cut(s) 235
NsiI ATGCAT 1 cut(s) 277
PfeI GAWTC 2 cut(s) 225, 285
PkrI GCNGC 1 cut(s) 330
PleI GAGTC 1 cut(s) 242
PpsI GAGTC 1 cut(s) 242
PspFI CCCAGC 1 cut(s) 203
RsaI GTAC 1 cut(s) 318
RsaNI GTAC 1 cut(s) 317
SaqAI TTAA 1 cut(s) 357
SatI GCNGC 1 cut(s) 329
Sau3AI GATC 1 cut(s) 145
SchI GAGTC 1 cut(s) 243
ScrFI CCNGG 1 cut(s) 198
SetI ASST 3 cut(s) 14, 300, 368
Sse9I AATT 1 cut(s) 171
SspMI CTAG 2 cut(s) 363, 367
StyD4I CCNGG 1 cut(s) 196
TasI AATT 1 cut(s) 171
TfiI GAWTC 2 cut(s) 225, 285
Tru1I TTAA 1 cut(s) 357
Tru9I TTAA 1 cut(s) 357
TscAI CASTG 1 cut(s) 244
TseFI GTSAC 1 cut(s) 235
TseI GCWGC 1 cut(s) 328
Tsp45I GTSAC 1 cut(s) 235
TspDTI ATGAA 3 cut(s) 205, 234, 359
TspGWI ACGGA 1 cut(s) 170
TspRI CASTG 1 cut(s) 244
XagI CCTNNNNNAGG 1 cut(s) 293
XapI RAATTY 1 cut(s) 171
XspI CTAG 2 cut(s) 363, 367
Zsp2I ATGCAT 1 cut(s) 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.