Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0033728.1

Orthogroup ID

OG0007191

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1780

Gene Structure 1780 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0033728.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

atgtacaactttggccaagctgggctgacattttgggcacccaatattaatatctttagggacccaagatgggggagaggccaagagacccctggggaggaccccatggttgcttctgcttatgctgtcgagtttgtgaagggatttcaaggtgggaattggggaggtgggagtggtattggaaatgggtttggagggaaaagagtgttggaagagagtgatgggttaatgctttcagcttgttgcaagcatttcactgcttatgatttggagatgtggggaaagtatagtagatatagcttcaatgcagtggtttcagaacaagatttggaggacacatatcagccgccttttcgtagctgcatacagcaaggcaaagctagctgcttgatgtgttcttacaatgcagtaaatggggttccagcatgcgcagacaaggatttgttggagaaagctcgagacaaatggcgcttcaaagggtatatcacctcagactgtgatgctgtggccacagtttttgaatatcagaattatacaaaaactgctgaggatgcagttgctgatgttcttaaagcaggaacggatattgattgtggtacatacttggttcgaaatactctttctacaatcaaacaaggaaaggtgcaagaggaagacatagatagggctcttcttaatcttttctccgttcaactccgtcttgggctgtttgatggagatcccataaaagggcaattcggaaggttgggacctcaagacgtgtgtacatcagagcacaaaaatttggcactcgaagcagcaaggcagggaatcgtgcttcttaaaaatgatgagaagttcctgcccctgaaaaagggtgttgatttttcgttggctgttattggtccattggcgaacaatgcaagtttgctgggtgggggttacacagggattccttgcaacccaaagactccttttgagggtcttcaggaatacagaaaaagaacatcttacacaactggttgccttgatgtaccatgtgtttctgattctgggttcaaggaagcaattcgtgctgccaaaaaagctgatttttctgttatagttgttggtcttgatgcgtcacaagaaagagaagatcacgaccga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0009044 GO:0016020 GO:0016787 GO:0016798 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0097599 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Fn3-like Glyco_hydro_3 Glyco_hydro_3_C

Protein Analysis

376

Amino Acids

41.21

Weight (kDa)

5.26

Isoelectric Point (pI)

31.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10560
fragaria_vesca	FvH4_1g18940 FvH4_1g18940 FvH4_1g18940 FvH4_1g18940 FvH4_1g18940 FvH4_1g18940 FvH4_1g18940 FvH4_1g18940
malus_domestica	MD01G1045300.v1.1
prunus_persica	Prupe.6G210000_v2.0.a1 Prupe.6G210000_v2.0.a1
pyrus_communis	pycom01g07120
rosa_chinensis	RchiOBHm_Chr2g0109951
rosa_laevigata	RLG00000017773
rosa_multiflora	Rmu_sc0005173.1_g000029 Rmu_sc0028281.1_g000001 Rmu_sc0033728.1_g000001
rosa_roxburghii	Rroxscaffold_2G00133850
rosa_rugosa	Rorug02G0164200
rosa_samantha	Rh2AG216100 Rh2BG226200 Rh2CG218300 Rh2DG221700
rosa_wichuraiana	Rw2G016690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	430
AccB1I	GGYRCC	1 cut(s)	37
AciI	CCGC	1 cut(s)	347
AclWI	GGATC	1 cut(s)	713
AcoI	YGGCCR	2 cut(s)	13, 507
AcsI	RAATTY	1 cut(s)	781
AcuI	CTGAAG	1 cut(s)	950
AfaI	GTAC	4 cut(s)	5, 598, 766, 1014
AfiI	CCNNNNNNNGG	7 cut(s)	70, 71, 97, 728, 729, 853, 959
AflIII	ACRYGT	1 cut(s)	759
AgsI	TTSAA	6 cut(s)	149, 304, 475, 521, 692, 1039
AjiI	CACGTC	1 cut(s)	760
AjnI	CCWGG	1 cut(s)	91
AjuI	GAANNNNNNNTTGG	2 cut(s)	191, 223
AluBI	AGCT	8 cut(s)	20, 239, 300, 360, 380, 384, 455, 1067
AluI	AGCT	8 cut(s)	20, 239, 300, 360, 380, 384, 455, 1067
Alw21I	GWGCWC	1 cut(s)	777
Alw26I	GTCTC	2 cut(s)	80, 453
AlwI	GGATC	1 cut(s)	713
AlwNI	CAGNNNCTG	1 cut(s)	560
Ama87I	CYCGRG	1 cut(s)	456
AoxI	GGCC	3 cut(s)	13, 79, 507
ApeKI	GCWGC	4 cut(s)	360, 384, 797, 1055
ApoI	RAATTY	1 cut(s)	781
AseI	ATTAAT	1 cut(s)	48
Asp700I	GAANNNNTTC	1 cut(s)	1047
AspLEI	GCGC	2 cut(s)	431, 471
AspS9I	GGNCC	4 cut(s)	61, 100, 749, 884
AsuHPI	GGTGA	1 cut(s)	478
AsuII	TTCGAA	1 cut(s)	610
AsuNHI	GCTAGC	1 cut(s)	380
AvaI	CYCGRG	1 cut(s)	456
AvaII	GGWCC	4 cut(s)	61, 100, 749, 884
BaeGI	GKGCMC	1 cut(s)	40
BalI	TGGCCA	2 cut(s)	15, 509
BanI	GGYRCC	1 cut(s)	37
BanII	GRGCYC	1 cut(s)	670
BbsI	GAAGAC	2 cut(s)	660, 956
Bbv12I	GWGCWC	1 cut(s)	777
BbvCI	CCTCAGC	1 cut(s)	546
BbvI	GCAGC	4 cut(s)	347, 371, 809, 1042
BccI	CCATC	3 cut(s)	63, 215, 707
BciT130I	CCWGG	1 cut(s)	93
BcoDI	GTCTC	2 cut(s)	80, 453
BfaI	CTAG	1 cut(s)	381
BfoI	RGCGCY	1 cut(s)	472
BisI	GCNGC	5 cut(s)	347, 361, 385, 798, 1056
BlsI	GCNGC	5 cut(s)	348, 362, 386, 799, 1057
Bme1390I	CCNGG	1 cut(s)	93
Bme18I	GGWCC	4 cut(s)	61, 100, 749, 884
BmeT110I	CYCGRG	1 cut(s)	456
BmgBI	CACGTC	1 cut(s)	760
BmgT120I	GGNCC	4 cut(s)	61, 100, 749, 884
BmiI	GGNNCC	6 cut(s)	39, 62, 63, 102, 420, 750
BmrFI	CCNGG	1 cut(s)	93
BmsI	GCATC	3 cut(s)	490, 541, 1087
BmtI	GCTAGC	1 cut(s)	384
BpiI	GAAGAC	2 cut(s)	660, 956
Bpu10I	CCTNAGC	1 cut(s)	546
Bpu14I	TTCGAA	1 cut(s)	610
BpuEI	CTTGAG	1 cut(s)	738
BsaBI	GATNNNNATC	1 cut(s)	717
BsaI	GGTCTC	1 cut(s)	80
BsaJI	CCNNGG	3 cut(s)	91, 92, 105
Bsc4I	CCNNNNNNNGG	7 cut(s)	70, 71, 97, 728, 729, 853, 959
Bse1I	ACTGG	1 cut(s)	1003
Bse8I	GATNNNNATC	1 cut(s)	717
BseBI	CCWGG	1 cut(s)	93
BseDI	CCNNGG	3 cut(s)	91, 92, 105
BseGI	GGATG	1 cut(s)	556
BseJI	GATNNNNATC	1 cut(s)	717
BseLI	CCNNNNNNNGG	7 cut(s)	70, 71, 97, 728, 729, 853, 959
BseMII	CTCAG	2 cut(s)	504, 537
BseNI	ACTGG	1 cut(s)	1003
BseSI	GKGCMC	1 cut(s)	40
BseXI	GCAGC	4 cut(s)	347, 371, 809, 1042
BseYI	CCCAGC	2 cut(s)	20, 910
Bsh1285I	CGRYCG	1 cut(s)	1126
BshFI	GGCC	3 cut(s)	15, 81, 509
BshNI	GGYRCC	1 cut(s)	37
BsiEI	CGRYCG	1 cut(s)	1126
BsiHKAI	GWGCWC	1 cut(s)	777
BsiHKCI	CYCGRG	1 cut(s)	456
BslFI	GGGAC	2 cut(s)	74, 762
BslI	CCNNNNNNNGG	7 cut(s)	70, 71, 97, 728, 729, 853, 959
BsmAI	GTCTC	2 cut(s)	80, 453
BsmFI	GGGAC	2 cut(s)	74, 762
BsnI	GGCC	3 cut(s)	15, 81, 509
Bso31I	GGTCTC	1 cut(s)	80
BsoBI	CYCGRG	1 cut(s)	456
Bsp119I	TTCGAA	1 cut(s)	610
Bsp1286I	GDGCHC	3 cut(s)	40, 670, 777
Bsp1407I	TGTACA	2 cut(s)	3, 764
Bsp143I	GATC	2 cut(s)	718, 1117
Bsp19I	CCATGG	1 cut(s)	105
BspACI	CCGC	1 cut(s)	347
BspANI	GGCC	3 cut(s)	15, 81, 509
BspCNI	CTCAG	2 cut(s)	503, 538
BspLI	GGNNCC	6 cut(s)	39, 62, 63, 102, 420, 750
BspOI	GCTAGC	1 cut(s)	384
BspPI	GGATC	1 cut(s)	713
BspQI	GCTCTTC	1 cut(s)	675
BspT104I	TTCGAA	1 cut(s)	610
BspT107I	GGYRCC	1 cut(s)	37
BspTNI	GGTCTC	1 cut(s)	80
BsrGI	TGTACA	2 cut(s)	3, 764
BsrI	ACTGG	1 cut(s)	1003
BssECI	CCNNGG	3 cut(s)	91, 92, 105
BssMI	GATC	2 cut(s)	718, 1117
BssT1I	CCWWGG	1 cut(s)	105
Bst2UI	CCWGG	1 cut(s)	93
Bst4CI	ACNGT	2 cut(s)	497, 514
Bst6I	CTCTTC	2 cut(s)	207, 675
BstAPI	GCANNNNNTGC	1 cut(s)	1052
BstAUI	TGTACA	2 cut(s)	3, 764
BstBI	TTCGAA	1 cut(s)	610
BstC8I	GCNNGC	3 cut(s)	248, 382, 427
BstDEI	CTNAG	2 cut(s)	490, 546
BstDSI	CCRYGG	1 cut(s)	105
BstENI	CCTNNNNNAGG	1 cut(s)	851
BstF5I	GGATG	1 cut(s)	556
BstH2I	RGCGCY	1 cut(s)	472
BstHHI	GCGC	2 cut(s)	431, 471
BstKTI	GATC	2 cut(s)	721, 1120
BstMAI	GTCTC	2 cut(s)	80, 453
BstMBI	GATC	2 cut(s)	718, 1117
BstMCI	CGRYCG	1 cut(s)	1126
BstMWI	GCNNNNNNNGC	6 cut(s)	381, 551, 794, 899, 1052, 1064
BstNI	CCWGG	1 cut(s)	93
BstNSI	RCATGY	1 cut(s)	429
BstSCI	CCNGG	1 cut(s)	91
BstSLI	GKGCMC	1 cut(s)	40
BstV1I	GCAGC	4 cut(s)	347, 371, 809, 1042
BstV2I	GAAGAC	2 cut(s)	660, 956
BstX2I	RGATCY	1 cut(s)	718
BstYI	RGATCY	1 cut(s)	718
BsuRI	GGCC	3 cut(s)	15, 81, 509
BtgI	CCRYGG	1 cut(s)	105
BtrI	CACGTC	1 cut(s)	760
BtsCI	GGATG	1 cut(s)	556
BtsI	GCAGTG	2 cut(s)	255, 315
BtsIMutI	CAGTG	2 cut(s)	255, 315
Cac8I	GCNNGC	3 cut(s)	248, 382, 427
CaiI	CAGNNNCTG	1 cut(s)	560
CfoI	GCGC	2 cut(s)	431, 471
Cfr13I	GGNCC	4 cut(s)	61, 100, 749, 884
CseI	GACGC	1 cut(s)	1089
Csp6I	GTAC	4 cut(s)	4, 597, 765, 1013
CspCI	CAANNNNNGTGG	2 cut(s)	499, 534
CviAII	CATG	3 cut(s)	106, 426, 1017
CviQI	GTAC	4 cut(s)	4, 597, 765, 1013
DdeI	CTNAG	2 cut(s)	490, 546
DpnI	GATC	2 cut(s)	720, 1119
DpnII	GATC	2 cut(s)	718, 1117
EaeI	YGGCCR	2 cut(s)	13, 507
Eam1104I	CTCTTC	2 cut(s)	207, 675
EarI	CTCTTC	2 cut(s)	207, 675
Eco130I	CCWWGG	1 cut(s)	105
Eco24I	GRGCYC	1 cut(s)	670
Eco31I	GGTCTC	1 cut(s)	80
Eco47I	GGWCC	4 cut(s)	61, 100, 749, 884
Eco57I	CTGAAG	1 cut(s)	950
Eco88I	CYCGRG	1 cut(s)	456
EcoNI	CCTNNNNNAGG	1 cut(s)	851
EcoO109I	RGGNCCY	3 cut(s)	61, 100, 749
EcoRII	CCWGG	1 cut(s)	91
EcoT14I	CCWWGG	1 cut(s)	105
EcoT38I	GRGCYC	1 cut(s)	670
ErhI	CCWWGG	1 cut(s)	105
FaeI	CATG	3 cut(s)	109, 429, 1020
FalI	AAGNNNNNCTT	2 cut(s)	973, 1005
FaqI	GGGAC	2 cut(s)	74, 762
FatI	CATG	3 cut(s)	105, 425, 1016
Fnu4HI	GCNGC	5 cut(s)	347, 361, 385, 798, 1056
FokI	GGATG	1 cut(s)	563
FriOI	GRGCYC	1 cut(s)	670
Fsp4HI	GCNGC	5 cut(s)	347, 361, 385, 798, 1056
FspBI	CTAG	1 cut(s)	381
FspI	TGCGCA	1 cut(s)	430
GlaI	GCGC	2 cut(s)	430, 470
GluI	GCNGC	5 cut(s)	347, 361, 385, 798, 1056
GsaI	CCCAGC	2 cut(s)	24, 914
HaeII	RGCGCY	1 cut(s)	472
HaeIII	GGCC	3 cut(s)	15, 81, 509
HgaI	GACGC	1 cut(s)	1089
HhaI	GCGC	2 cut(s)	431, 471
Hin1II	CATG	3 cut(s)	109, 429, 1020
Hin6I	GCGC	2 cut(s)	429, 469
HinP1I	GCGC	2 cut(s)	429, 469
HinfI	GANTC	4 cut(s)	810, 931, 949, 1028
HphI	GGTGA	1 cut(s)	478
Hpy166II	GTNNAC	1 cut(s)	765
Hpy188I	TCNGA	6 cut(s)	319, 493, 528, 740, 772, 1027
Hpy188III	TCNNGA	5 cut(s)	458, 755, 968, 1094, 1121
Hpy8I	GTNNAC	1 cut(s)	765
HpyAV	CCTTC	2 cut(s)	133, 735
HpyCH4III	ACNGT	2 cut(s)	497, 514
HpyCH4IV	ACGT	1 cut(s)	759
HpyCH4V	TGCA	8 cut(s)	246, 308, 363, 407, 554, 646, 902, 939
HpyF10VI	GCNNNNNNNGC	6 cut(s)	381, 551, 794, 899, 1052, 1064
HpyF3I	CTNAG	2 cut(s)	490, 546
HpySE526I	ACGT	1 cut(s)	759
Hsp92II	CATG	3 cut(s)	109, 429, 1020
HspAI	GCGC	2 cut(s)	429, 469
KflI	GGGWCCC	1 cut(s)	61
Kzo9I	GATC	2 cut(s)	718, 1117
LguI	GCTCTTC	1 cut(s)	675
Lsp1109I	GCAGC	4 cut(s)	347, 371, 809, 1042
LweI	GCATC	3 cut(s)	490, 541, 1087
MaeI	CTAG	1 cut(s)	381
MaeII	ACGT	1 cut(s)	759
MaeIII	GTNAC	2 cut(s)	920, 1101
MalI	GATC	2 cut(s)	720, 1119
MboI	GATC	2 cut(s)	718, 1117
MboII	GAAGA	5 cut(s)	224, 662, 665, 956, 1127
MflI	RGATCY	1 cut(s)	718
MhlI	GDGCHC	3 cut(s)	40, 670, 777
MlsI	TGGCCA	2 cut(s)	15, 509
MluCI	AATT	5 cut(s)	157, 529, 734, 781, 1047
MluNI	TGGCCA	2 cut(s)	15, 509
MlyI	GAGTC	1 cut(s)	943
MmeI	TCCRAC	2 cut(s)	189, 426
Mox20I	TGGCCA	2 cut(s)	15, 509
MroXI	GAANNNNTTC	1 cut(s)	1047
MscI	TGGCCA	2 cut(s)	15, 509
MseI	TTAA	5 cut(s)	48, 227, 570, 675, 822
Msp20I	TGGCCA	2 cut(s)	15, 509
MspR9I	CCNGG	1 cut(s)	93
MvaI	CCWGG	1 cut(s)	93
MwoI	GCNNNNNNNGC	6 cut(s)	381, 551, 794, 899, 1052, 1064
NcoI	CCATGG	1 cut(s)	105
NdeII	GATC	2 cut(s)	718, 1117
NheI	GCTAGC	1 cut(s)	380
NlaIII	CATG	3 cut(s)	109, 429, 1020
NlaIV	GGNNCC	6 cut(s)	39, 62, 63, 102, 420, 750
NmuCI	GTSAC	1 cut(s)	1101
NsbI	TGCGCA	1 cut(s)	430
NspI	RCATGY	1 cut(s)	429
NspV	TTCGAA	1 cut(s)	610
PaeI	GCATGC	1 cut(s)	429
PaeR7I	CTCGAG	1 cut(s)	456
PasI	CCCWGGG	1 cut(s)	92
PciSI	GCTCTTC	1 cut(s)	675
PdmI	GAANNNNTTC	1 cut(s)	1047
PfeI	GAWTC	3 cut(s)	810, 931, 1028
PkrI	GCNGC	5 cut(s)	348, 362, 386, 799, 1057
PleI	GAGTC	1 cut(s)	943
PpsI	GAGTC	1 cut(s)	943
PpuMI	RGGWCCY	3 cut(s)	61, 100, 749
PshBI	ATTAAT	1 cut(s)	48
Psp5II	RGGWCCY	3 cut(s)	61, 100, 749
Psp6I	CCWGG	1 cut(s)	91
PspFI	CCCAGC	2 cut(s)	20, 910
PspGI	CCWGG	1 cut(s)	91
PspN4I	GGNNCC	6 cut(s)	39, 62, 63, 102, 420, 750
PspPI	GGNCC	4 cut(s)	61, 100, 749, 884
PspPPI	RGGWCCY	3 cut(s)	61, 100, 749
PsrI	GAACNNNNNNTAC	2 cut(s)	402, 434
PstNI	CAGNNNCTG	1 cut(s)	560
PsuI	RGATCY	1 cut(s)	718
RsaI	GTAC	4 cut(s)	5, 598, 766, 1014
RsaNI	GTAC	4 cut(s)	4, 597, 765, 1013
SapI	GCTCTTC	1 cut(s)	675
SaqAI	TTAA	5 cut(s)	48, 227, 570, 675, 822
SatI	GCNGC	5 cut(s)	347, 361, 385, 798, 1056
Sau3AI	GATC	2 cut(s)	718, 1117
Sau96I	GGNCC	4 cut(s)	61, 100, 749, 884
SchI	GAGTC	1 cut(s)	943
ScrFI	CCNGG	1 cut(s)	93
SduI	GDGCHC	3 cut(s)	40, 670, 777
SfaNI	GCATC	3 cut(s)	490, 541, 1087
Sfr274I	CTCGAG	1 cut(s)	456
SfuI	TTCGAA	1 cut(s)	610
SinI	GGWCC	4 cut(s)	61, 100, 749, 884
SlaI	CTCGAG	1 cut(s)	456
SmlI	CTYRAG	2 cut(s)	456, 753
SmoI	CTYRAG	2 cut(s)	456, 753
SphI	GCATGC	1 cut(s)	429
Sse9I	AATT	5 cut(s)	157, 529, 734, 781, 1047
SsiI	CCGC	1 cut(s)	347
SspI	AATATT	1 cut(s)	46
SspMI	CTAG	1 cut(s)	381
StyD4I	CCNGG	1 cut(s)	91
StyI	CCWWGG	1 cut(s)	105
TaaI	ACNGT	2 cut(s)	497, 514
TaiI	ACGT	1 cut(s)	762
TaqI	TCGA	4 cut(s)	129, 457, 610, 792
TasI	AATT	5 cut(s)	157, 529, 734, 781, 1047
TatI	WGTACW	2 cut(s)	3, 764
TauI	GCSGC	1 cut(s)	349
TfiI	GAWTC	3 cut(s)	810, 931, 1028
Tru1I	TTAA	5 cut(s)	48, 227, 570, 675, 822
Tru9I	TTAA	5 cut(s)	48, 227, 570, 675, 822
TscAI	CASTG	2 cut(s)	262, 315
TseFI	GTSAC	1 cut(s)	1101
TseI	GCWGC	4 cut(s)	360, 384, 797, 1055
Tsp45I	GTSAC	1 cut(s)	1101
TspGWI	ACGGA	3 cut(s)	596, 676, 686
TspRI	CASTG	2 cut(s)	262, 315
VpaK11BI	GGWCC	4 cut(s)	61, 100, 749, 884
VspI	ATTAAT	1 cut(s)	48
XagI	CCTNNNNNAGG	1 cut(s)	851
XapI	RAATTY	1 cut(s)	781
XceI	RCATGY	1 cut(s)	429
XcmI	CCANNNNNNNNNTGG	1 cut(s)	89
XhoI	CTCGAG	1 cut(s)	456
XmnI	GAANNNNTTC	1 cut(s)	1047
XspI	CTAG	1 cut(s)	381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.