Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039784.1

Orthogroup ID

OG0007197

Physical Location & Seq

Genomic Coordinates Reverse (-)

12211 .. 17303

Gene Structure 5093 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039784.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

atggtgcagcagctgcttcatcagctcaaggccttggttgatgactgcaagaggaccttccaggaaactgattttaaagaatggaagctggtgattcaggaaatagttagatttttgaaagctgacacagcttttatgaatatcaggccattgagatatagtattgtcctggaatgtcatcccgattccttaccacctgtttccacattggttgtaaggaggtctttgagactgcgagatgcgatactaagcagctaccatcataatgaggtaaagttttcggagctcactctagacacttttaggatgcttcaatgtctggagtgggaacctagtggctcattttaccagtcaaatgttgctagaaacggtcagaacggggcgccagggtccggccgcattaactactcccaagatattgctgatcctactctgccacataacccacggaaagctgtcttatatcgtccttctgttacacattttctggcagttctggcaacagtttgtgaggagcttccatctgatggagttatcttgatatatctgtccgcttcaggttctggaatgtatgctgatgcgacatctgatagactaaatccttctcgtggacaaagtaaaggagatgactcaagcttacatgctagttgtttaaactttggtagccatggaaatggaggaataaatagcgtctatcccagtgacttggttccatttacaagaaggccactctttctagttattgactgtgacagcagtgaagcttttgaggctataaatggagtacaaaaaggagagagagctgcaatgctcctatcttcaagctcttcatatcaagcttctgatgttggttcctctcgtcagccaagtggaagcctattcactattttccttacagctccaatgcaggctttctgtttattgcttggtgtttcaggcactgacactgacatggatatatataacaaggctgagaagctgctttctagttcattaagtgactggggatctactttggcaacatcagatactattgaccctgtctgggcacaggttttaactgatccattcctgaggcgactcctattgaggtactatcctataaagcttaatggagactattacaggaacattttttctgagagaataatgacatgtttttgcttttcatgcccgcaattctctcaagatttgatactgttctgttgtttatccctgcaagtgttttgctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SCAI

Protein Analysis

410

Amino Acids

45.71

Weight (kDa)

5.78

Isoelectric Point (pI)

48.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007197)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03570
fragaria_vesca	FvH4_7g07180 FvH4_7g07180 FvH4_7g07180 FvH4_7g07180 FvH4_7g07180 FvH4_7g07180
malus_domestica	MD02G1239100.v1.1
prunus_persica	Prupe.2G099200_v2.0.a1 Prupe.2G099200_v2.0.a1 Prupe.2G099200_v2.0.a1 Prupe.2G099200_v2.0.a1
pyrus_communis	pycom02g20430
rosa_chinensis	RchiOBHm_Chr1g0337201
rosa_laevigata	RLG00000029300 RLG00000029489
rosa_multiflora	Rmu_sc0002160.1_g000006 Rmu_sc0039784.1_g000001
rosa_roxburghii	Rroxscaffold_4G00314710
rosa_rugosa	Rorug01G0132100.1
rosa_samantha	Rh1AG152700 Rh1BG121700 Rh1CG143600 Rh1DG160000
rosa_wichuraiana	Rw1G012490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	382
AccB7I	CCANNNNNTGG	1 cut(s)	527
AciI	CCGC	3 cut(s)	397, 552, 1175
AclWI	GGATC	3 cut(s)	419, 1015, 1058
AcoI	YGGCCR	1 cut(s)	394
AcuI	CTGAAG	1 cut(s)	540
AcyI	GRCGYC	1 cut(s)	383
AfaI	GTAC	2 cut(s)	786, 1094
AfiI	CCNNNNNNNGG	4 cut(s)	392, 527, 608, 1045
AflIII	ACRYGT	1 cut(s)	1154
AgsI	TTSAA	3 cut(s)	118, 314, 822
AjnI	CCWGG	3 cut(s)	60, 168, 385
Alw21I	GWGCWC	1 cut(s)	288
Alw26I	GTCTC	2 cut(s)	223, 1110
AlwI	GGATC	3 cut(s)	419, 1015, 1058
AlwNI	CAGNNNCTG	3 cut(s)	13, 563, 941
AoxI	GGCC	4 cut(s)	30, 146, 394, 725
ApeKI	GCWGC	6 cut(s)	7, 10, 13, 252, 803, 979
AspLEI	GCGC	1 cut(s)	385
AspS9I	GGNCC	2 cut(s)	54, 390
AsuHPI	GGTGA	1 cut(s)	103
AvaII	GGWCC	2 cut(s)	54, 390
AxyI	CCTNAGG	1 cut(s)	1073
BaeGI	GKGCMC	1 cut(s)	1051
BanI	GGYRCC	1 cut(s)	382
BanII	GRGCYC	1 cut(s)	288
BauI	CACGAG	1 cut(s)	606
Bbv12I	GWGCWC	1 cut(s)	288
BbvI	GCAGC	5 cut(s)	19, 22, 264, 790, 966
BccI	CCATC	3 cut(s)	267, 521, 529
BciT130I	CCWGG	3 cut(s)	62, 170, 387
BcoDI	GTCTC	2 cut(s)	223, 1110
BfaI	CTAG	7 cut(s)	293, 333, 363, 645, 737, 987, 1231
BfoI	RGCGCY	1 cut(s)	386
BisI	GCNGC	7 cut(s)	8, 11, 14, 253, 397, 804, 980
BlsI	GCNGC	7 cut(s)	9, 12, 15, 254, 398, 805, 981
Bme1390I	CCNGG	3 cut(s)	62, 170, 387
Bme18I	GGWCC	2 cut(s)	54, 390
BmgT120I	GGNCC	2 cut(s)	54, 390
BmiI	GGNNCC	5 cut(s)	330, 384, 391, 711, 853
BmrFI	CCNGG	3 cut(s)	62, 170, 387
BmrI	ACTGGG	2 cut(s)	693, 1012
BmsI	GCATC	3 cut(s)	229, 297, 568
BmuI	ACTGGG	2 cut(s)	693, 1012
BpmI	CTGGAG	1 cut(s)	341
BpuEI	CTTGAG	3 cut(s)	11, 616, 1170
BsaHI	GRCGYC	1 cut(s)	383
BsaJI	CCNNGG	4 cut(s)	33, 386, 446, 667
Bsc4I	CCNNNNNNNGG	4 cut(s)	392, 527, 608, 1045
Bse1I	ACTGG	3 cut(s)	349, 699, 1007
Bse21I	CCTNAGG	1 cut(s)	1073
Bse3DI	GCAATG	1 cut(s)	813
BseBI	CCWGG	3 cut(s)	62, 170, 387
BseDI	CCNNGG	4 cut(s)	33, 386, 446, 667
BseGI	GGATG	2 cut(s)	178, 312
BseLI	CCNNNNNNNGG	4 cut(s)	392, 527, 608, 1045
BseMI	GCAATG	1 cut(s)	813
BseMII	CTCAG	3 cut(s)	963, 1064, 1131
BseNI	ACTGG	3 cut(s)	349, 699, 1007
BseRI	GAGGAG	1 cut(s)	527
BseSI	GKGCMC	1 cut(s)	1051
BseX3I	CGGCCG	1 cut(s)	394
BseXI	GCAGC	5 cut(s)	19, 22, 264, 790, 966
BsgI	GTGCAG	1 cut(s)	26
Bsh1285I	CGRYCG	1 cut(s)	397
BshFI	GGCC	4 cut(s)	32, 148, 396, 727
BshNI	GGYRCC	1 cut(s)	382
BsiEI	CGRYCG	1 cut(s)	397
BsiHKAI	GWGCWC	1 cut(s)	288
BsiSI	CCGG	1 cut(s)	393
BslI	CCNNNNNNNGG	4 cut(s)	392, 527, 608, 1045
BsmAI	GTCTC	2 cut(s)	223, 1110
BsnI	GGCC	4 cut(s)	32, 148, 396, 727
Bsp1286I	GDGCHC	2 cut(s)	288, 1051
Bsp143I	GATC	3 cut(s)	424, 1007, 1063
Bsp19I	CCATGG	1 cut(s)	667
BspACI	CCGC	3 cut(s)	397, 552, 1175
BspANI	GGCC	4 cut(s)	32, 148, 396, 727
BspCNI	CTCAG	3 cut(s)	964, 1065, 1132
BspLI	GGNNCC	5 cut(s)	330, 384, 391, 711, 853
BspPI	GGATC	3 cut(s)	419, 1015, 1058
BspQI	GCTCTTC	1 cut(s)	832
BspT107I	GGYRCC	1 cut(s)	382
BsrDI	GCAATG	1 cut(s)	813
BsrI	ACTGG	3 cut(s)	349, 699, 1007
BssECI	CCNNGG	4 cut(s)	33, 386, 446, 667
BssMI	GATC	3 cut(s)	424, 1007, 1063
BssNI	GRCGYC	1 cut(s)	383
BssSI	CACGAG	1 cut(s)	606
BssT1I	CCWWGG	2 cut(s)	33, 667
Bst2BI	CACGAG	1 cut(s)	606
Bst2UI	CCWGG	3 cut(s)	62, 170, 387
Bst4CI	ACNGT	4 cut(s)	371, 505, 749, 1200
Bst6I	CTCTTC	1 cut(s)	832
BstACI	GRCGYC	1 cut(s)	383
BstAPI	GCANNNNNTGC	1 cut(s)	13
BstC8I	GCNNGC	2 cut(s)	909, 1175
BstDEI	CTNAG	4 cut(s)	248, 972, 1073, 1140
BstDSI	CCRYGG	2 cut(s)	446, 667
BstF5I	GGATG	2 cut(s)	178, 312
BstH2I	RGCGCY	1 cut(s)	386
BstHHI	GCGC	1 cut(s)	385
BstKTI	GATC	3 cut(s)	427, 1010, 1066
BstMAI	GTCTC	2 cut(s)	223, 1110
BstMBI	GATC	3 cut(s)	424, 1007, 1063
BstMCI	CGRYCG	1 cut(s)	397
BstMWI	GCNNNNNNNGC	6 cut(s)	13, 22, 128, 497, 770, 1170
BstNI	CCWGG	3 cut(s)	62, 170, 387
BstNSI	RCATGY	2 cut(s)	644, 1158
BstSCI	CCNGG	3 cut(s)	60, 168, 385
BstSLI	GKGCMC	1 cut(s)	1051
BstV1I	GCAGC	5 cut(s)	19, 22, 264, 790, 966
BstX2I	RGATCY	1 cut(s)	1007
BstXI	CCANNNNNNTGG	2 cut(s)	674, 706
BstYI	RGATCY	1 cut(s)	1007
BstZI	CGGCCG	1 cut(s)	394
Bsu36I	CCTNAGG	1 cut(s)	1073
BsuRI	GGCC	4 cut(s)	32, 148, 396, 727
BtgI	CCRYGG	2 cut(s)	446, 667
BtsCI	GGATG	2 cut(s)	178, 312
BtsI	GCAGTG	1 cut(s)	763
BtsIMutI	CAGTG	4 cut(s)	706, 763, 939, 945
Cac8I	GCNNGC	2 cut(s)	909, 1175
CaiI	CAGNNNCTG	3 cut(s)	13, 563, 941
CfoI	GCGC	1 cut(s)	385
Cfr13I	GGNCC	2 cut(s)	54, 390
CseI	GACGC	1 cut(s)	679
Csp6I	GTAC	2 cut(s)	785, 1093
CspCI	CAANNNNNGTGG	2 cut(s)	193, 228
CviAII	CATG	5 cut(s)	641, 668, 952, 1155, 1170
CviQI	GTAC	2 cut(s)	785, 1093
DdeI	CTNAG	4 cut(s)	248, 972, 1073, 1140
DinI	GGCGCC	1 cut(s)	384
DpnI	GATC	3 cut(s)	426, 1009, 1065
DpnII	GATC	3 cut(s)	424, 1007, 1063
DraI	TTTAAA	2 cut(s)	76, 654
EaeI	YGGCCR	1 cut(s)	394
EagI	CGGCCG	1 cut(s)	394
Eam1104I	CTCTTC	1 cut(s)	832
EarI	CTCTTC	1 cut(s)	832
Ecl136II	GAGCTC	1 cut(s)	286
EclXI	CGGCCG	1 cut(s)	394
Eco130I	CCWWGG	2 cut(s)	33, 667
Eco147I	AGGCCT	1 cut(s)	32
Eco24I	GRGCYC	1 cut(s)	288
Eco47I	GGWCC	2 cut(s)	54, 390
Eco52I	CGGCCG	1 cut(s)	394
Eco53kI	GAGCTC	1 cut(s)	286
Eco57I	CTGAAG	1 cut(s)	540
Eco81I	CCTNAGG	1 cut(s)	1073
EcoICRI	GAGCTC	1 cut(s)	286
EcoO109I	RGGNCCY	1 cut(s)	54
EcoRII	CCWGG	3 cut(s)	60, 168, 385
EcoT14I	CCWWGG	2 cut(s)	33, 667
EcoT38I	GRGCYC	1 cut(s)	288
EgeI	GGCGCC	1 cut(s)	384
EheI	GGCGCC	1 cut(s)	384
ErhI	CCWWGG	2 cut(s)	33, 667
FaeI	CATG	5 cut(s)	644, 671, 955, 1158, 1173
FalI	AAGNNNNNCTT	4 cut(s)	41, 73, 208, 240
FatI	CATG	5 cut(s)	640, 667, 951, 1154, 1169
FauI	CCCGC	1 cut(s)	1182
Fnu4HI	GCNGC	7 cut(s)	8, 11, 14, 253, 397, 804, 980
FokI	GGATG	2 cut(s)	165, 319
FriOI	GRGCYC	1 cut(s)	288
Fsp4HI	GCNGC	7 cut(s)	8, 11, 14, 253, 397, 804, 980
FspBI	CTAG	7 cut(s)	293, 333, 363, 645, 737, 987, 1231
GlaI	GCGC	1 cut(s)	384
GluI	GCNGC	7 cut(s)	8, 11, 14, 253, 397, 804, 980
GsuI	CTGGAG	1 cut(s)	341
HaeII	RGCGCY	1 cut(s)	386
HaeIII	GGCC	4 cut(s)	32, 148, 396, 727
HapII	CCGG	1 cut(s)	393
HgaI	GACGC	1 cut(s)	679
HhaI	GCGC	1 cut(s)	385
Hin1I	GRCGYC	1 cut(s)	383
Hin1II	CATG	5 cut(s)	644, 671, 955, 1158, 1173
Hin6I	GCGC	1 cut(s)	383
HinP1I	GCGC	1 cut(s)	383
HindIII	AAGCTT	4 cut(s)	634, 762, 837, 1106
HinfI	GANTC	4 cut(s)	94, 185, 629, 1080
HpaII	CCGG	1 cut(s)	393
HphI	GGTGA	1 cut(s)	103
Hpy166II	GTNNAC	1 cut(s)	611
Hpy188I	TCNGA	7 cut(s)	283, 375, 526, 589, 844, 1027, 1141
Hpy188III	TCNNGA	8 cut(s)	98, 182, 293, 320, 538, 564, 1072, 1187
Hpy8I	GTNNAC	1 cut(s)	611
HpyAV	CCTTC	4 cut(s)	67, 480, 612, 717
HpyCH4III	ACNGT	4 cut(s)	371, 505, 749, 1200
HpyCH4V	TGCA	5 cut(s)	7, 48, 806, 907, 1219
HpyF10VI	GCNNNNNNNGC	6 cut(s)	13, 22, 128, 497, 770, 1170
HpyF3I	CTNAG	4 cut(s)	248, 972, 1073, 1140
Hsp92I	GRCGYC	1 cut(s)	383
Hsp92II	CATG	5 cut(s)	644, 671, 955, 1158, 1173
HspAI	GCGC	1 cut(s)	383
KasI	GGCGCC	1 cut(s)	382
Kzo9I	GATC	3 cut(s)	424, 1007, 1063
LguI	GCTCTTC	1 cut(s)	832
LmnI	GCTCC	4 cut(s)	283, 514, 816, 904
Lsp1109I	GCAGC	5 cut(s)	19, 22, 264, 790, 966
LweI	GCATC	3 cut(s)	229, 297, 568
MaeI	CTAG	7 cut(s)	293, 333, 363, 645, 737, 987, 1231
MaeIII	GTNAC	4 cut(s)	475, 701, 749, 998
MalI	GATC	3 cut(s)	426, 1009, 1065
MboI	GATC	3 cut(s)	424, 1007, 1063
MboII	GAAGA	2 cut(s)	810, 819
MflI	RGATCY	1 cut(s)	1007
MhlI	GDGCHC	2 cut(s)	288, 1051
MluCI	AATT	1 cut(s)	1178
Mly113I	GGCGCC	1 cut(s)	383
MlyI	GAGTC	2 cut(s)	623, 1074
MnlI	CCTC	9 cut(s)	45, 213, 262, 505, 671, 763, 865, 1068, 1083
MseI	TTAA	6 cut(s)	75, 402, 653, 995, 1058, 1110
MslI	CAYNNNNRTG	3 cut(s)	264, 672, 950
MspA1I	CMGCKG	1 cut(s)	13
MspI	CCGG	1 cut(s)	393
MspR9I	CCNGG	3 cut(s)	62, 170, 387
MssI	GTTTAAAC	1 cut(s)	654
MvaI	CCWGG	3 cut(s)	62, 170, 387
MwoI	GCNNNNNNNGC	6 cut(s)	13, 22, 128, 497, 770, 1170
NarI	GGCGCC	1 cut(s)	383
NcoI	CCATGG	1 cut(s)	667
NdeII	GATC	3 cut(s)	424, 1007, 1063
NlaIII	CATG	5 cut(s)	644, 671, 955, 1158, 1173
NlaIV	GGNNCC	5 cut(s)	330, 384, 391, 711, 853
NmuCI	GTSAC	3 cut(s)	701, 749, 998
NspI	RCATGY	2 cut(s)	644, 1158
PceI	AGGCCT	1 cut(s)	32
PciI	ACATGT	1 cut(s)	1154
PciSI	GCTCTTC	1 cut(s)	832
PfeI	GAWTC	2 cut(s)	94, 185
PflFI	GACNNNGTC	1 cut(s)	1040
PflMI	CCANNNNNTGG	1 cut(s)	527
PfoI	TCCNGGA	2 cut(s)	60, 168
PkrI	GCNGC	7 cut(s)	9, 12, 15, 254, 398, 805, 981
PleI	GAGTC	2 cut(s)	623, 1074
PluTI	GGCGCC	1 cut(s)	386
PmeI	GTTTAAAC	1 cut(s)	654
PpsI	GAGTC	2 cut(s)	623, 1074
PpuMI	RGGWCCY	1 cut(s)	54
PscI	ACATGT	1 cut(s)	1154
Psp124BI	GAGCTC	1 cut(s)	288
Psp5II	RGGWCCY	1 cut(s)	54
Psp6I	CCWGG	3 cut(s)	60, 168, 385
PspGI	CCWGG	3 cut(s)	60, 168, 385
PspN4I	GGNNCC	5 cut(s)	330, 384, 391, 711, 853
PspPI	GGNCC	2 cut(s)	54, 390
PspPPI	RGGWCCY	1 cut(s)	54
PstNI	CAGNNNCTG	3 cut(s)	13, 563, 941
PsuI	RGATCY	1 cut(s)	1007
PsyI	GACNNNGTC	1 cut(s)	1040
PvuII	CAGCTG	1 cut(s)	13
RsaI	GTAC	2 cut(s)	786, 1094
RsaNI	GTAC	2 cut(s)	785, 1093
RseI	CAYNNNNRTG	3 cut(s)	264, 672, 950
SacI	GAGCTC	1 cut(s)	288
SapI	GCTCTTC	1 cut(s)	832
SaqAI	TTAA	6 cut(s)	75, 402, 653, 995, 1058, 1110
SatI	GCNGC	7 cut(s)	8, 11, 14, 253, 397, 804, 980
Sau3AI	GATC	3 cut(s)	424, 1007, 1063
Sau96I	GGNCC	2 cut(s)	54, 390
SchI	GAGTC	2 cut(s)	623, 1074
ScrFI	CCNGG	3 cut(s)	62, 170, 387
SduI	GDGCHC	2 cut(s)	288, 1051
SfaNI	GCATC	3 cut(s)	229, 297, 568
SfoI	GGCGCC	1 cut(s)	384
SinI	GGWCC	2 cut(s)	54, 390
SmiMI	CAYNNNNRTG	3 cut(s)	264, 672, 950
SmlI	CTYRAG	3 cut(s)	26, 631, 1185
SmoI	CTYRAG	3 cut(s)	26, 631, 1185
Sse9I	AATT	1 cut(s)	1178
SseBI	AGGCCT	1 cut(s)	32
SsiI	CCGC	3 cut(s)	397, 552, 1175
SspDI	GGCGCC	1 cut(s)	382
SspMI	CTAG	7 cut(s)	293, 333, 363, 645, 737, 987, 1231
SstI	GAGCTC	1 cut(s)	288
StuI	AGGCCT	1 cut(s)	32
StyD4I	CCNGG	3 cut(s)	60, 168, 385
StyI	CCWWGG	2 cut(s)	33, 667
TaaI	ACNGT	4 cut(s)	371, 505, 749, 1200
TasI	AATT	1 cut(s)	1178
TatI	WGTACW	1 cut(s)	784
TauI	GCSGC	1 cut(s)	399
TfiI	GAWTC	2 cut(s)	94, 185
Tru1I	TTAA	6 cut(s)	75, 402, 653, 995, 1058, 1110
Tru9I	TTAA	6 cut(s)	75, 402, 653, 995, 1058, 1110
TscAI	CASTG	4 cut(s)	706, 763, 946, 952
TseFI	GTSAC	3 cut(s)	701, 749, 998
TseI	GCWGC	6 cut(s)	7, 10, 13, 252, 803, 979
Tsp45I	GTSAC	3 cut(s)	701, 749, 998
TspDTI	ATGAA	5 cut(s)	8, 152, 819, 981, 1158
TspGWI	ACGGA	1 cut(s)	463
TspRI	CASTG	4 cut(s)	706, 763, 946, 952
Tth111I	GACNNNGTC	1 cut(s)	1040
Van91I	CCANNNNNTGG	1 cut(s)	527
VpaK11BI	GGWCC	2 cut(s)	54, 390
XbaI	TCTAGA	1 cut(s)	292
XceI	RCATGY	2 cut(s)	644, 1158
XspI	CTAG	7 cut(s)	293, 333, 363, 645, 737, 987, 1231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.