Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0040206.1

Orthogroup ID

OG0008971

Physical Location & Seq

Genomic Coordinates Forward (+)

280 .. 1626

Gene Structure 1347 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0040206.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

atgcagtctcttcctgatattgcatggggtaaaagaagccgtgtgatattggatgttgggtgtggggtagccagcttcggaggatttctatttgacagagatgttcttgccatgtcatttgctcccaaggatgaacacgaagcccaagttcaatttgcgctagagcggggtatccctgccatatcagctgttatgggtaccacaaggctaccatacccaagttctgtgtttgatcttatccactgtgcacgctgtagagtcccttggcatgttgaaggtggtaaactgctcttggagcttaatcgtgtcttgcgacctggtggttattttgtttggtccgcaactccggtttaccaaaagcttcccgaagatgttggcatctggaaagcgatgtctgaactaactaagtcaatttgctgggatctggtggtgattaaaaaagacaagctcaatcaagtcgctgctgctatatataggaaaccatctaccaatgagtgctacaatgaaagagcacaaaatgagcctcctctttgtagtgaatctgatgatccaaatgctgcctggaaagtaccattagaggcatgcatacacaaagtacctgaggatgcgtcagatcgtgggtctcaatggccaccgcagtggccatcaaggttggagaaaccaccatactggttgaagtctcagcttgatgttaatggaaaatctgcgccagaagattttatttctgactataagcattggaagaatgttgtgtccaagacatatttgactgggatgggaatcgattggtcatctgtaaggaatgtcctggacatgagagctgtatatggagggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005911 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009506 GO:0012505 GO:0016740 GO:0016741 GO:0030054 GO:0031410 GO:0031982 GO:0031984 GO:0032259 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_29

Protein Analysis

278

Amino Acids

31.27

Weight (kDa)

6.95

Isoelectric Point (pI)

39.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008971)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29470 AT1G29470 AT2G34300 AT2G34300 AT2G34300
fragaria_vesca	FvH4_2g00990 FvH4_2g00990
malus_domestica	MD05G1008600.v1.1 MD10G1006100.v1.1
prunus_persica	Prupe.8G010300_v2.0.a1
pyrus_communis	pycom10g00450
rosa_chinensis	RchiOBHm_Chr6g0251511
rosa_laevigata	RLG00000015461
rosa_multiflora	Rmu_sc0001382.1_g000020 Rmu_sc0040206.1_g000001
rosa_roxburghii	Rroxscaffold_7G00216610
rosa_rugosa	Rorug05G0502800 Rorug05G0502900
rosa_samantha	Rh6AG011600 Rh6BG010400 Rh6CG009000
rosa_wichuraiana	Rw6G001340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	197
AccB1I	GGYRCC	1 cut(s)	197
AccBSI	CCGCTC	1 cut(s)	166
AciI	CCGC	3 cut(s)	166, 339, 635
AclWI	GGATC	2 cut(s)	429, 542
AcoI	YGGCCR	2 cut(s)	629, 641
AfaI	GTAC	3 cut(s)	199, 570, 597
AgsI	TTSAA	3 cut(s)	152, 275, 676
AjnI	CCWGG	3 cut(s)	316, 560, 807
AleI	CACNNNNGTG	1 cut(s)	637
AluBI	AGCT	7 cut(s)	75, 188, 298, 361, 448, 685, 821
AluI	AGCT	7 cut(s)	75, 188, 298, 361, 448, 685, 821
Alw21I	GWGCWC	2 cut(s)	250, 514
Alw26I	GTCTC	3 cut(s)	12, 627, 684
Alw44I	GTGCAC	1 cut(s)	246
AlwI	GGATC	2 cut(s)	429, 542
AoxI	GGCC	2 cut(s)	629, 641
ApaLI	GTGCAC	1 cut(s)	246
ApeKI	GCWGC	3 cut(s)	461, 464, 557
Asp718I	GGTACC	1 cut(s)	197
AspLEI	GCGC	2 cut(s)	160, 709
AspS9I	GGNCC	1 cut(s)	336
AsuHPI	GGTGA	1 cut(s)	442
AvaII	GGWCC	1 cut(s)	336
AxyI	CCTNAGG	1 cut(s)	600
BaeGI	GKGCMC	1 cut(s)	250
BalI	TGGCCA	2 cut(s)	631, 643
BanI	GGYRCC	1 cut(s)	197
Bbv12I	GWGCWC	2 cut(s)	250, 514
BbvI	GCAGC	3 cut(s)	448, 451, 544
BccI	CCATC	3 cut(s)	490, 652, 769
BceAI	ACGGC	1 cut(s)	24
BciT130I	CCWGG	3 cut(s)	318, 562, 809
BciVI	GTATCC	1 cut(s)	182
BcoDI	GTCTC	3 cut(s)	12, 627, 684
BfaI	CTAG	1 cut(s)	161
BfmI	CTRYAG	1 cut(s)	253
BfuI	GTATCC	1 cut(s)	182
BisI	GCNGC	3 cut(s)	462, 465, 558
BlsI	GCNGC	3 cut(s)	463, 466, 559
Bme1390I	CCNGG	3 cut(s)	318, 562, 809
Bme18I	GGWCC	1 cut(s)	336
BmgT120I	GGNCC	1 cut(s)	336
BmiI	GGNNCC	1 cut(s)	199
BmrFI	CCNGG	3 cut(s)	318, 562, 809
BmrI	ACTGGG	1 cut(s)	780
BmsI	GCATC	2 cut(s)	387, 595
BmuI	ACTGGG	1 cut(s)	780
Bsa29I	ATCGAT	1 cut(s)	783
BsaBI	GATNNNNATC	1 cut(s)	779
BsaI	GGTCTC	1 cut(s)	627
BsaJI	CCNNGG	2 cut(s)	126, 263
BsaWI	WCCGGW	1 cut(s)	346
Bse1I	ACTGG	2 cut(s)	674, 775
Bse21I	CCTNAGG	1 cut(s)	600
Bse8I	GATNNNNATC	1 cut(s)	779
BseBI	CCWGG	3 cut(s)	318, 562, 809
BseCI	ATCGAT	1 cut(s)	783
BseDI	CCNNGG	2 cut(s)	126, 263
BseGI	GGATG	4 cut(s)	58, 136, 610, 780
BseJI	GATNNNNATC	1 cut(s)	779
BseMII	CTCAG	2 cut(s)	591, 695
BseNI	ACTGG	2 cut(s)	674, 775
BseRI	GAGGAG	1 cut(s)	516
BseSI	GKGCMC	1 cut(s)	250
BseXI	GCAGC	3 cut(s)	448, 451, 544
BseYI	CCCAGC	1 cut(s)	417
BshFI	GGCC	2 cut(s)	631, 643
BshNI	GGYRCC	1 cut(s)	197
BshVI	ATCGAT	1 cut(s)	783
BsiHKAI	GWGCWC	2 cut(s)	250, 514
BsiSI	CCGG	1 cut(s)	347
BslFI	GGGAC	1 cut(s)	245
BsmAI	GTCTC	3 cut(s)	12, 627, 684
BsmFI	GGGAC	1 cut(s)	245
BsnI	GGCC	2 cut(s)	631, 643
Bso31I	GGTCTC	1 cut(s)	627
Bsp1286I	GDGCHC	2 cut(s)	250, 514
Bsp143I	GATC	4 cut(s)	232, 421, 547, 613
BspACI	CCGC	3 cut(s)	166, 339, 635
BspANI	GGCC	2 cut(s)	631, 643
BspCNI	CTCAG	2 cut(s)	592, 694
BspDI	ATCGAT	1 cut(s)	783
BspLI	GGNNCC	1 cut(s)	199
BspPI	GGATC	2 cut(s)	429, 542
BspT107I	GGYRCC	1 cut(s)	197
BspTNI	GGTCTC	1 cut(s)	627
BsrBI	CCGCTC	1 cut(s)	166
BsrI	ACTGG	2 cut(s)	674, 775
BssECI	CCNNGG	2 cut(s)	126, 263
BssMI	GATC	4 cut(s)	232, 421, 547, 613
BssT1I	CCWWGG	2 cut(s)	126, 263
Bst2UI	CCWGG	3 cut(s)	318, 562, 809
Bst4CI	ACNGT	1 cut(s)	245
Bst6I	CTCTTC	1 cut(s)	15
BstC8I	GCNNGC	3 cut(s)	73, 250, 583
BstDEI	CTNAG	3 cut(s)	405, 600, 681
BstF5I	GGATG	4 cut(s)	58, 136, 610, 780
BstHHI	GCGC	2 cut(s)	160, 709
BstKTI	GATC	4 cut(s)	235, 424, 550, 616
BstMAI	GTCTC	3 cut(s)	12, 627, 684
BstMBI	GATC	4 cut(s)	232, 421, 547, 613
BstMWI	GCNNNNNNNGC	2 cut(s)	185, 295
BstNI	CCWGG	3 cut(s)	318, 562, 809
BstNSI	RCATGY	2 cut(s)	272, 585
BstSCI	CCNGG	3 cut(s)	316, 560, 807
BstSFI	CTRYAG	1 cut(s)	253
BstSLI	GKGCMC	1 cut(s)	250
BstV1I	GCAGC	3 cut(s)	448, 451, 544
BstX2I	RGATCY	1 cut(s)	421
BstXI	CCANNNNNNTGG	2 cut(s)	639, 669
BstYI	RGATCY	1 cut(s)	421
Bsu15I	ATCGAT	1 cut(s)	783
Bsu36I	CCTNAGG	1 cut(s)	600
BsuI	GTATCC	1 cut(s)	182
BsuRI	GGCC	2 cut(s)	631, 643
BsuTUI	ATCGAT	1 cut(s)	783
BtgZI	GCGATG	1 cut(s)	404
BtsCI	GGATG	4 cut(s)	58, 136, 610, 780
BtsI	GCAGTG	1 cut(s)	644
BtsIMutI	CAGTG	2 cut(s)	241, 644
Cac8I	GCNNGC	3 cut(s)	73, 250, 583
CfoI	GCGC	2 cut(s)	160, 709
Cfr13I	GGNCC	1 cut(s)	336
ClaI	ATCGAT	1 cut(s)	783
CseI	GACGC	1 cut(s)	597
CsiI	ACCWGGT	1 cut(s)	316
Csp6I	GTAC	3 cut(s)	198, 569, 596
CviAII	CATG	5 cut(s)	24, 112, 269, 582, 814
CviQI	GTAC	3 cut(s)	198, 569, 596
DdeI	CTNAG	3 cut(s)	405, 600, 681
DpnI	GATC	4 cut(s)	234, 423, 549, 615
DpnII	GATC	4 cut(s)	232, 421, 547, 613
EaeI	YGGCCR	2 cut(s)	629, 641
Eam1104I	CTCTTC	1 cut(s)	15
EarI	CTCTTC	1 cut(s)	15
Eco130I	CCWWGG	2 cut(s)	126, 263
Eco31I	GGTCTC	1 cut(s)	627
Eco47I	GGWCC	1 cut(s)	336
Eco81I	CCTNAGG	1 cut(s)	600
EcoRII	CCWGG	3 cut(s)	316, 560, 807
EcoT14I	CCWWGG	2 cut(s)	126, 263
EcoT22I	ATGCAT	1 cut(s)	587
ErhI	CCWWGG	2 cut(s)	126, 263
FaeI	CATG	5 cut(s)	27, 115, 272, 585, 817
FaqI	GGGAC	1 cut(s)	245
FatI	CATG	5 cut(s)	23, 111, 268, 581, 813
FauI	CCCGC	1 cut(s)	159
Fnu4HI	GCNGC	3 cut(s)	462, 465, 558
FokI	GGATG	4 cut(s)	65, 143, 617, 787
Fsp4HI	GCNGC	3 cut(s)	462, 465, 558
FspBI	CTAG	1 cut(s)	161
GlaI	GCGC	2 cut(s)	159, 708
GluI	GCNGC	3 cut(s)	462, 465, 558
GsaI	CCCAGC	1 cut(s)	421
HaeIII	GGCC	2 cut(s)	631, 643
HapII	CCGG	1 cut(s)	347
HgaI	GACGC	1 cut(s)	597
HhaI	GCGC	2 cut(s)	160, 709
Hin1II	CATG	5 cut(s)	27, 115, 272, 585, 817
Hin6I	GCGC	2 cut(s)	158, 707
HinP1I	GCGC	2 cut(s)	158, 707
HindIII	AAGCTT	1 cut(s)	359
HinfI	GANTC	3 cut(s)	258, 539, 780
HpaII	CCGG	1 cut(s)	347
HphI	GGTGA	1 cut(s)	442
Hpy166II	GTNNAC	3 cut(s)	248, 284, 352
Hpy188I	TCNGA	5 cut(s)	80, 397, 544, 613, 727
Hpy188III	TCNNGA	3 cut(s)	14, 365, 382
Hpy8I	GTNNAC	3 cut(s)	248, 284, 352
HpyAV	CCTTC	1 cut(s)	269
HpyCH4III	ACNGT	1 cut(s)	245
HpyCH4V	TGCA	4 cut(s)	4, 23, 248, 585
HpyF10VI	GCNNNNNNNGC	2 cut(s)	185, 295
HpyF3I	CTNAG	3 cut(s)	405, 600, 681
Hsp92II	CATG	5 cut(s)	27, 115, 272, 585, 817
HspAI	GCGC	2 cut(s)	158, 707
KpnI	GGTACC	1 cut(s)	201
Kzo9I	GATC	4 cut(s)	232, 421, 547, 613
LmnI	GCTCC	2 cut(s)	127, 295
Lsp1109I	GCAGC	3 cut(s)	448, 451, 544
LweI	GCATC	2 cut(s)	387, 595
MabI	ACCWGGT	1 cut(s)	316
MaeI	CTAG	1 cut(s)	161
MalI	GATC	4 cut(s)	234, 423, 549, 615
MbiI	CCGCTC	1 cut(s)	166
MboI	GATC	4 cut(s)	232, 421, 547, 613
MboII	GAAGA	3 cut(s)	380, 725, 754
MflI	RGATCY	1 cut(s)	421
MhlI	GDGCHC	2 cut(s)	250, 514
MlsI	TGGCCA	2 cut(s)	631, 643
MluCI	AATT	2 cut(s)	152, 411
MluNI	TGGCCA	2 cut(s)	631, 643
MlyI	GAGTC	1 cut(s)	267
MmeI	TCCRAC	1 cut(s)	633
MnlI	CCTC	6 cut(s)	74, 534, 537, 571, 595, 824
Mox20I	TGGCCA	2 cut(s)	631, 643
Mph1103I	ATGCAT	1 cut(s)	587
MscI	TGGCCA	2 cut(s)	631, 643
MseI	TTAA	3 cut(s)	300, 435, 693
MslI	CAYNNNNRTG	1 cut(s)	637
Msp20I	TGGCCA	2 cut(s)	631, 643
MspA1I	CMGCKG	1 cut(s)	188
MspI	CCGG	1 cut(s)	347
MspR9I	CCNGG	3 cut(s)	318, 562, 809
MvaI	CCWGG	3 cut(s)	318, 562, 809
MwoI	GCNNNNNNNGC	2 cut(s)	185, 295
NdeII	GATC	4 cut(s)	232, 421, 547, 613
NlaIII	CATG	5 cut(s)	27, 115, 272, 585, 817
NlaIV	GGNNCC	1 cut(s)	199
NsiI	ATGCAT	1 cut(s)	587
NspI	RCATGY	2 cut(s)	272, 585
OliI	CACNNNNGTG	1 cut(s)	637
PaeI	GCATGC	1 cut(s)	585
PcsI	WCGNNNNNNNCGW	1 cut(s)	310
PfeI	GAWTC	2 cut(s)	539, 780
PfoI	TCCNGGA	1 cut(s)	807
PkrI	GCNGC	3 cut(s)	463, 466, 559
PleI	GAGTC	1 cut(s)	266
PpsI	GAGTC	1 cut(s)	266
Psp6I	CCWGG	3 cut(s)	316, 560, 807
PspFI	CCCAGC	1 cut(s)	417
PspGI	CCWGG	3 cut(s)	316, 560, 807
PspN4I	GGNNCC	1 cut(s)	199
PspPI	GGNCC	1 cut(s)	336
PsuI	RGATCY	1 cut(s)	421
PvuII	CAGCTG	1 cut(s)	188
RsaI	GTAC	3 cut(s)	199, 570, 597
RsaNI	GTAC	3 cut(s)	198, 569, 596
RseI	CAYNNNNRTG	1 cut(s)	637
SaqAI	TTAA	3 cut(s)	300, 435, 693
SatI	GCNGC	3 cut(s)	462, 465, 558
Sau3AI	GATC	4 cut(s)	232, 421, 547, 613
Sau96I	GGNCC	1 cut(s)	336
SchI	GAGTC	1 cut(s)	267
ScrFI	CCNGG	3 cut(s)	318, 562, 809
SduI	GDGCHC	2 cut(s)	250, 514
SexAI	ACCWGGT	1 cut(s)	316
SfaNI	GCATC	2 cut(s)	387, 595
SfcI	CTRYAG	1 cut(s)	253
SinI	GGWCC	1 cut(s)	336
SmiMI	CAYNNNNRTG	1 cut(s)	637
SphI	GCATGC	1 cut(s)	585
Sse9I	AATT	2 cut(s)	152, 411
SsiI	CCGC	3 cut(s)	166, 339, 635
SspMI	CTAG	1 cut(s)	161
StyD4I	CCNGG	3 cut(s)	316, 560, 807
StyI	CCWWGG	2 cut(s)	126, 263
TaaI	ACNGT	1 cut(s)	245
TaqI	TCGA	1 cut(s)	783
TasI	AATT	2 cut(s)	152, 411
TfiI	GAWTC	2 cut(s)	539, 780
Tru1I	TTAA	3 cut(s)	300, 435, 693
Tru9I	TTAA	3 cut(s)	300, 435, 693
TscAI	CASTG	2 cut(s)	248, 644
TseI	GCWGC	3 cut(s)	461, 464, 557
TspDTI	ATGAA	2 cut(s)	147, 519
TspRI	CASTG	2 cut(s)	248, 644
VneI	GTGCAC	1 cut(s)	246
VpaK11BI	GGWCC	1 cut(s)	336
XceI	RCATGY	2 cut(s)	272, 585
XcmI	CCANNNNNNNNNTGG	1 cut(s)	558
XspI	CTAG	1 cut(s)	161
Zsp2I	ATGCAT	1 cut(s)	587

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.