Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0008971

Physical Location & Seq

Genomic Coordinates Reverse (-)

1093345 .. 1098985

Gene Structure 5641 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG009000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2394 bp

ATGGCTATGGGGAAGTATTCCCGAGTTGACGGAAAGAAGTCACTGAATTGTTGCTCAACAACCAGTCTAGTTGTATTTGTTGCATTTTGTTTAGTTGGGGTTTGGATGTTAATGTCATCAGTTGTTCCAATTCAGAGCCAAAACTTATCAACTGAGGAGAATCTGACCGATAAAAGTTCTAAGCAATATGAAGACAGTTCTGGTGGATTATCAGAAACTGTGACAAGAGAGGATGACAGTGGCAGTGATTCACAGAGTGAAACCAATATTGAAAATACTCAGAATGTTTCACAGGACGAGTCTGTGAGTACAAGTGAAGAAAAACAGGAAGAAGTGGTTTCAAAGGAGGTTTCTGAGGAGAAAGTTGAGTCTGAAAGTGAGAATGGTGACGAGGGAAATCAGCAAGAGAAGTTTGTGAAGGAGAGCTCTGATGAGAAAACTGAGAGCGAAGAGGAACCAAAGACAGAGAACGAAAATGATGGGGATGCGAAAGTAAATGATCAGGAAGTTAGTTCTGGAGATGGTCAGTCAAACTCAGAAGCTGGATCAACAGAGGAAGCAAGTGGTAAAACGAGTGAAAATGAACGGACAGAATTAGAGGGTGAAAAGAAATCGGAGGGAGATGAATCTGCTGATGAAAAGAAGCAGGAAGATGAAGTTCCTAGTCAGACTGATGAGGAGAAGGTTGAGAACAATCAAGGCAATAATTCAGAAGAAGGTGATACCAGTAATAACATGGACAGTGAGAAGGAAACAGAAAAGTCTTCAATATCTAAAACTCAGAGTGAGTATAGCTGGAAACTCTGTAATGTCACTGCAGGGCCTGACTACATCCCTTGTCTTGACAATTGGAAAACTATTAGAAAGCTTCCAAGTACAATGCACTATGAACATCGAGAGAGGCACTGCCCCGAGGAAGCTTCCACCTGTCTCGTTTCTCTACCTGAAGGATATAGACGGCCAATTCAGTGGCCAACAAGCAGGGAAAAGATATGGTACCACAACGTTCCTCACACCAAGCTTGCAGTAGTTAAGGGGCACCAAAATTGGGTTAAAGTTACTGGTGAATACCTTACTTTCCCTGGTGGTGGAACTCAGTTTAAGAATGGTGCTCTTCACTATATTGATTTTATTCAAAATTCTCTTCCTGATATTGCATGGGGTAAAAGAAGCCGTGTGATATTGGATGTTGGGTGTGGGGTAGCCAGCTTCGGAGGATTTCTATTTGACAGAGATGTTCTTGCCATGTCATTTGCTCCCAAGGATGAACACGAAGCCCAAGTTCAATTTGCGCTAGAGCGGGGTATCCCTGCCATATCAGCTGTTATGGGTACCACAAGGCTACCGTACCCAAGTTCTGTGTTTGATCTTATCCACTGTGCACGCTGTAGAGTCCCTTGGCATGTTGAAGGTGGTAAACTGCTCTTGGAGCTTAATCGTGTCTTGCGACCTGGTGGTTATTTTGTTTGGTCCGCAACTCCGGTTTACCAAAAGCTTCCTGAAGATGTTGGCATTTGGAAAGCGATGTCTGAACTAACTAAGTCAATTTGCTGGGATCTGGTGGTGATTAAAAAAGACAAGCTCAATCAAGTCGCTGCTGCTATATATAGGAAACCATCTACCAATGAGTGCTACAATGAAAGAGCACAAAATGAGCCTCCTCTTTGCAGTGAATCTGATGATCCAAATGCTGCCTGGAAAGTACCATTAGAGGCATGCATACACAAAGTACCTGAGGATGCGTCAGATCGTGGGTCTCAATGGCCACCGCAGTGGCCATCAAGGTTGGAGAAACCACCATACTGGTTGAAGTCTCAGCTTGATGTTAATGGAAAATCTGCGCCAGAAGATTTTATTTCTGACTATAAGCATTGGAAGAATGTTGTGTCCAAGACATATTTGACTGGGATGGGAATCGATTGGTCATCTGTAAGGAATGTCCTGGACATGAGAGCTGTATATGGAGGGTTTGCTGCAGCACTGAAAGACTTAAAAGTATGGGTAATGAATGTAGTTCCGCCTATTGATTCTCGTGACACACTTGCAATAATCTTTGAGCGTGGATTAATCGGAATGTACCATGACTGGTGTGAATCATTCAGTACATATCCTAGGACTTATGATGTTGTCCATGCAGATCATCTGTTCTCTGTCCTTAAGAAAAGATGCAACCTAGTGGCGGTGATTGTGGAAGTGGACAGGATACTAAGGCCAGAAGGGAAGCTAATCGTATGGGATGATGCTGAAACCTTGAACGAGATTGAGAGCATGGTCAAATCTCTGCAGTGGGATATCCGATTTACTTACTCAAAAGACAACAAGGGTTTGCTCTGCATTCAGAAAACGTTTTGGCGTCCTACTGAGCAAGAGACAATTCTATCAGCCATTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005911 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009506 GO:0012505 GO:0016740 GO:0016741 GO:0030054 GO:0031410 GO:0031982 GO:0031984 GO:0032259 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_29

Protein Analysis

797

Amino Acids

89.74

Weight (kDa)

4.86

Isoelectric Point (pI)

47.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_29	PF03141	276 - 777	1.2e-227	Putative S-adenosyl-L-methionine-dependent methyltransferase
Methyltransf_11	PF08241	395 - 489	2.4e-06	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008971)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29470 AT1G29470 AT2G34300 AT2G34300 AT2G34300
fragaria_vesca	FvH4_2g00990 FvH4_2g00990
malus_domestica	MD05G1008600.v1.1 MD10G1006100.v1.1
prunus_persica	Prupe.8G010300_v2.0.a1
pyrus_communis	pycom10g00450
rosa_chinensis	RchiOBHm_Chr6g0251511
rosa_laevigata	RLG00000015461
rosa_multiflora	Rmu_sc0001382.1_g000020 Rmu_sc0040206.1_g000001
rosa_roxburghii	Rroxscaffold_7G00216610
rosa_rugosa	Rorug05G0502800 Rorug05G0502900
rosa_samantha	Rh6AG011600 Rh6BG010400 Rh6CG009000
rosa_wichuraiana	Rw6G001340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	996, 1331
AccB1I	GGYRCC	3 cut(s)	996, 1038, 1331
AccBSI	CCGCTC	1 cut(s)	1300
AciI	CCGC	5 cut(s)	1300, 1473, 1769, 2018, 2180
AclI	AACGTT	2 cut(s)	1005, 2345
AclWI	GGATC	3 cut(s)	553, 1563, 1676
AcoI	YGGCCR	4 cut(s)	959, 971, 1763, 1775
AcsI	RAATTY	1 cut(s)	1138
AcuI	CTGAAG	2 cut(s)	966, 1521
AcyI	GRCGYC	1 cut(s)	2353
AdeI	CACNNNGTG	1 cut(s)	257
AfaI	GTAC	9 cut(s)	310, 877, 998, 1333, 1349, 1704, 1731, 2078, 2104
AfiI	CCNNNNNNNGG	3 cut(s)	1048, 1088, 2179
AflII	CTTAAG	1 cut(s)	2156
AgsI	TTSAA	8 cut(s)	272, 342, 768, 1136, 1286, 1409, 1810, 2254
AjnI	CCWGG	4 cut(s)	1081, 1450, 1694, 1941
AleI	CACNNNNGTG	1 cut(s)	1771
Alw21I	GWGCWC	4 cut(s)	428, 1114, 1384, 1648
Alw26I	GTCTC	4 cut(s)	935, 1761, 1818, 2363
Alw44I	GTGCAC	1 cut(s)	1380
AlwI	GGATC	3 cut(s)	553, 1563, 1676
AlwNI	CAGNNNCTG	3 cut(s)	218, 542, 824
Ama87I	CYCGRG	2 cut(s)	21, 911
AoxI	GGCC	6 cut(s)	821, 959, 971, 1763, 1775, 2210
ApaLI	GTGCAC	1 cut(s)	1380
ApeKI	GCWGC	5 cut(s)	1595, 1598, 1691, 1973, 1976
ApoI	RAATTY	1 cut(s)	1138
AseI	ATTAAT	1 cut(s)	2066
Asp718I	GGTACC	2 cut(s)	996, 1331
AspA2I	CCTAGG	1 cut(s)	2111
AspLEI	GCGC	2 cut(s)	1294, 1843
AspS9I	GGNCC	2 cut(s)	821, 1470
AsuHPI	GGTGA	6 cut(s)	398, 614, 731, 1076, 1576, 2194
AvaI	CYCGRG	2 cut(s)	21, 911
AvaII	GGWCC	1 cut(s)	1470
AvrII	CCTAGG	1 cut(s)	2111
AxyI	CCTNAGG	1 cut(s)	1734
BaeGI	GKGCMC	2 cut(s)	1041, 1384
BalI	TGGCCA	3 cut(s)	973, 1765, 1777
BanI	GGYRCC	3 cut(s)	996, 1038, 1331
BanII	GRGCYC	1 cut(s)	428
BauI	CACGAG	1 cut(s)	2031
BbsI	GAAGAC	2 cut(s)	198, 756
Bbv12I	GWGCWC	4 cut(s)	428, 1114, 1384, 1648
BbvI	GCAGC	5 cut(s)	1582, 1585, 1678, 1960, 1988
BccI	CCATC	5 cut(s)	473, 515, 1624, 1786, 1903
BceAI	ACGGC	2 cut(s)	974, 1158
BciT130I	CCWGG	4 cut(s)	1083, 1452, 1696, 1943
BciVI	GTATCC	2 cut(s)	1316, 2196
BclI	TGATCA	1 cut(s)	499
BcoDI	GTCTC	4 cut(s)	935, 1761, 1818, 2363
BfaI	CTAG	5 cut(s)	68, 663, 1295, 2112, 2174
BfmI	CTRYAG	4 cut(s)	816, 1387, 1974, 2282
BfrI	CTTAAG	1 cut(s)	2156
BfuI	GTATCC	2 cut(s)	1316, 2196
BisI	GCNGC	5 cut(s)	1596, 1599, 1692, 1974, 1977
BlnI	CCTAGG	1 cut(s)	2111
BlsI	GCNGC	5 cut(s)	1597, 1600, 1693, 1975, 1978
Bme1390I	CCNGG	4 cut(s)	1083, 1452, 1696, 1943
Bme18I	GGWCC	1 cut(s)	1470
BmeT110I	CYCGRG	2 cut(s)	21, 911
BmgT120I	GGNCC	2 cut(s)	821, 1470
BmiI	GGNNCC	4 cut(s)	456, 998, 1040, 1333
BmrFI	CCNGG	4 cut(s)	1083, 1452, 1696, 1943
BmrI	ACTGGG	1 cut(s)	1914
BmsI	GCATC	4 cut(s)	475, 1729, 2156, 2230
BmuI	ACTGGG	1 cut(s)	1914
BpiI	GAAGAC	2 cut(s)	198, 756
BpmI	CTGGAG	1 cut(s)	537
Bsa29I	ATCGAT	1 cut(s)	1917
BsaBI	GATNNNNATC	1 cut(s)	1913
BsaHI	GRCGYC	1 cut(s)	2353
BsaI	GGTCTC	1 cut(s)	1761
BsaJI	CCNNGG	5 cut(s)	912, 1081, 1260, 1397, 2111
BsaWI	WCCGGW	1 cut(s)	1480
Bsc4I	CCNNNNNNNGG	3 cut(s)	1048, 1088, 2179
Bse1I	ACTGG	6 cut(s)	63, 726, 1066, 1808, 1909, 2090
Bse21I	CCTNAGG	1 cut(s)	1734
Bse3DI	GCAATG	1 cut(s)	2385
Bse8I	GATNNNNATC	1 cut(s)	1913
BseBI	CCWGG	4 cut(s)	1083, 1452, 1696, 1943
BseCI	ATCGAT	1 cut(s)	1917
BseDI	CCNNGG	5 cut(s)	912, 1081, 1260, 1397, 2111
BseGI	GGATG	9 cut(s)	111, 238, 490, 831, 1192, 1270, 1744, 1914, 2242
BseJI	GATNNNNATC	1 cut(s)	1913
BseLI	CCNNNNNNNGG	3 cut(s)	1048, 1088, 2179
BseMI	GCAATG	1 cut(s)	2385
BseNI	ACTGG	6 cut(s)	63, 726, 1066, 1808, 1909, 2090
BseRI	GAGGAG	4 cut(s)	170, 371, 692, 1650
BseSI	GKGCMC	2 cut(s)	1041, 1384
BseXI	GCAGC	5 cut(s)	1582, 1585, 1678, 1960, 1988
BseYI	CCCAGC	1 cut(s)	1551
BshFI	GGCC	6 cut(s)	823, 961, 973, 1765, 1777, 2212
BshNI	GGYRCC	3 cut(s)	996, 1038, 1331
BshVI	ATCGAT	1 cut(s)	1917
BsiHKAI	GWGCWC	4 cut(s)	428, 1114, 1384, 1648
BsiHKCI	CYCGRG	2 cut(s)	21, 911
BsiSI	CCGG	1 cut(s)	1481
BslFI	GGGAC	1 cut(s)	1379
BslI	CCNNNNNNNGG	3 cut(s)	1048, 1088, 2179
BsmAI	GTCTC	4 cut(s)	935, 1761, 1818, 2363
BsmFI	GGGAC	1 cut(s)	1379
BsmI	GAATGC	1 cut(s)	2334
BsnI	GGCC	6 cut(s)	823, 961, 973, 1765, 1777, 2212
Bso31I	GGTCTC	1 cut(s)	1761
BsoBI	CYCGRG	2 cut(s)	21, 911
Bsp1286I	GDGCHC	5 cut(s)	428, 1041, 1114, 1384, 1648
Bsp143I	GATC	7 cut(s)	499, 545, 1366, 1555, 1681, 1747, 2137
BspACI	CCGC	5 cut(s)	1300, 1473, 1769, 2018, 2180
BspANI	GGCC	6 cut(s)	823, 961, 973, 1765, 1777, 2212
BspDI	ATCGAT	1 cut(s)	1917
BspLI	GGNNCC	4 cut(s)	456, 998, 1040, 1333
BspMAI	CTGCAG	3 cut(s)	820, 1978, 2286
BspPI	GGATC	3 cut(s)	553, 1563, 1676
BspQI	GCTCTTC	1 cut(s)	1119
BspT107I	GGYRCC	3 cut(s)	996, 1038, 1331
BspTI	CTTAAG	1 cut(s)	2156
BspTNI	GGTCTC	1 cut(s)	1761
BsrBI	CCGCTC	1 cut(s)	1300
BsrDI	GCAATG	1 cut(s)	2385
BsrI	ACTGG	6 cut(s)	63, 726, 1066, 1808, 1909, 2090
BssECI	CCNNGG	5 cut(s)	912, 1081, 1260, 1397, 2111
BssMI	GATC	7 cut(s)	499, 545, 1366, 1555, 1681, 1747, 2137
BssNI	GRCGYC	1 cut(s)	2353
BssSI	CACGAG	1 cut(s)	2031
BssT1I	CCWWGG	3 cut(s)	1260, 1397, 2111
Bst2BI	CACGAG	1 cut(s)	2031
Bst2UI	CCWGG	4 cut(s)	1083, 1452, 1696, 1943
Bst4CI	ACNGT	6 cut(s)	197, 220, 239, 743, 1347, 1379
Bst6I	CTCTTC	3 cut(s)	444, 1119, 1149
BstACI	GRCGYC	1 cut(s)	2353
BstAFI	CTTAAG	1 cut(s)	2156
BstC8I	GCNNGC	4 cut(s)	1023, 1207, 1384, 1717
BstF5I	GGATG	9 cut(s)	111, 238, 490, 831, 1192, 1270, 1744, 1914, 2242
BstHHI	GCGC	2 cut(s)	1294, 1843
BstKTI	GATC	7 cut(s)	502, 548, 1369, 1558, 1684, 1750, 2140
BstMAI	GTCTC	4 cut(s)	935, 1761, 1818, 2363
BstMBI	GATC	7 cut(s)	499, 545, 1366, 1555, 1681, 1747, 2137
BstMWI	GCNNNNNNNGC	2 cut(s)	1319, 1429
BstNI	CCWGG	4 cut(s)	1083, 1452, 1696, 1943
BstNSI	RCATGY	2 cut(s)	1406, 1719
BstSCI	CCNGG	4 cut(s)	1081, 1450, 1694, 1941
BstSFI	CTRYAG	4 cut(s)	816, 1387, 1974, 2282
BstSLI	GKGCMC	2 cut(s)	1041, 1384
BstV1I	GCAGC	5 cut(s)	1582, 1585, 1678, 1960, 1988
BstV2I	GAAGAC	2 cut(s)	198, 756
BstX2I	RGATCY	1 cut(s)	1555
BstXI	CCANNNNNNTGG	3 cut(s)	969, 1773, 1803
BstYI	RGATCY	1 cut(s)	1555
Bsu15I	ATCGAT	1 cut(s)	1917
Bsu36I	CCTNAGG	1 cut(s)	1734
BsuI	GTATCC	2 cut(s)	1316, 2196
BsuRI	GGCC	6 cut(s)	823, 961, 973, 1765, 1777, 2212
BsuTUI	ATCGAT	1 cut(s)	1917
BtgZI	GCGATG	1 cut(s)	1538
BtsCI	GGATG	9 cut(s)	111, 238, 490, 831, 1192, 1270, 1744, 1914, 2242
BtsI	GCAGTG	6 cut(s)	250, 813, 904, 1675, 1778, 2291
Cac8I	GCNNGC	4 cut(s)	1023, 1207, 1384, 1717
CaiI	CAGNNNCTG	3 cut(s)	218, 542, 824
CfoI	GCGC	2 cut(s)	1294, 1843
Cfr13I	GGNCC	2 cut(s)	821, 1470
ClaI	ATCGAT	1 cut(s)	1917
CseI	GACGC	2 cut(s)	1731, 2342
CsiI	ACCWGGT	1 cut(s)	1450
Csp6I	GTAC	9 cut(s)	309, 876, 997, 1332, 1348, 1703, 1730, 2077, 2103
CviAII	CATG	9 cut(s)	736, 1158, 1246, 1403, 1716, 1948, 2081, 2132, 2269
CviQI	GTAC	9 cut(s)	309, 876, 997, 1332, 1348, 1703, 1730, 2077, 2103
DpnI	GATC	7 cut(s)	501, 547, 1368, 1557, 1683, 1749, 2139
DpnII	GATC	7 cut(s)	499, 545, 1366, 1555, 1681, 1747, 2137
DraIII	CACNNNGTG	1 cut(s)	257
EaeI	YGGCCR	4 cut(s)	959, 971, 1763, 1775
Eam1104I	CTCTTC	3 cut(s)	444, 1119, 1149
EarI	CTCTTC	3 cut(s)	444, 1119, 1149
EciI	GGCGGA	1 cut(s)	2007
Ecl136II	GAGCTC	1 cut(s)	426
Eco130I	CCWWGG	3 cut(s)	1260, 1397, 2111
Eco24I	GRGCYC	1 cut(s)	428
Eco31I	GGTCTC	1 cut(s)	1761
Eco32I	GATATC	1 cut(s)	2293
Eco47I	GGWCC	1 cut(s)	1470
Eco53kI	GAGCTC	1 cut(s)	426
Eco57I	CTGAAG	2 cut(s)	966, 1521
Eco81I	CCTNAGG	1 cut(s)	1734
Eco88I	CYCGRG	2 cut(s)	21, 911
EcoICRI	GAGCTC	1 cut(s)	426
EcoO109I	RGGNCCY	1 cut(s)	821
EcoRII	CCWGG	4 cut(s)	1081, 1450, 1694, 1941
EcoRV	GATATC	1 cut(s)	2293
EcoT14I	CCWWGG	3 cut(s)	1260, 1397, 2111
EcoT22I	ATGCAT	1 cut(s)	1721
EcoT38I	GRGCYC	1 cut(s)	428
ErhI	CCWWGG	3 cut(s)	1260, 1397, 2111
FaeI	CATG	9 cut(s)	739, 1161, 1249, 1406, 1719, 1951, 2084, 2135, 2272
FaqI	GGGAC	1 cut(s)	1379
FatI	CATG	9 cut(s)	735, 1157, 1245, 1402, 1715, 1947, 2080, 2131, 2268
FauI	CCCGC	1 cut(s)	1293
FbaI	TGATCA	1 cut(s)	499
Fnu4HI	GCNGC	5 cut(s)	1596, 1599, 1692, 1974, 1977
FokI	GGATG	9 cut(s)	118, 245, 497, 818, 1199, 1277, 1751, 1921, 2249
FriOI	GRGCYC	1 cut(s)	428
Fsp4HI	GCNGC	5 cut(s)	1596, 1599, 1692, 1974, 1977
FspBI	CTAG	5 cut(s)	68, 663, 1295, 2112, 2174
GlaI	GCGC	2 cut(s)	1293, 1842
GluI	GCNGC	5 cut(s)	1596, 1599, 1692, 1974, 1977
GsaI	CCCAGC	1 cut(s)	1555
GsuI	CTGGAG	1 cut(s)	537
HaeIII	GGCC	6 cut(s)	823, 961, 973, 1765, 1777, 2212
HapII	CCGG	1 cut(s)	1481
HgaI	GACGC	2 cut(s)	1731, 2342
HhaI	GCGC	2 cut(s)	1294, 1843
Hin1I	GRCGYC	1 cut(s)	2353
Hin1II	CATG	9 cut(s)	739, 1161, 1249, 1406, 1719, 1951, 2084, 2135, 2272
Hin6I	GCGC	2 cut(s)	1292, 1841
HinP1I	GCGC	2 cut(s)	1292, 1841
HincII	GTYRAC	1 cut(s)	28
HindII	GTYRAC	1 cut(s)	28
HindIII	AAGCTT	4 cut(s)	866, 918, 1019, 1493
HpaII	CCGG	1 cut(s)	1481
HphI	GGTGA	6 cut(s)	398, 614, 731, 1076, 1576, 2194
Hpy166II	GTNNAC	5 cut(s)	28, 1382, 1418, 1486, 2197
Hpy188III	TCNNGA	8 cut(s)	21, 503, 516, 842, 896, 1148, 1499, 2033
Hpy8I	GTNNAC	5 cut(s)	28, 1382, 1418, 1486, 2197
HpyAV	CCTTC	7 cut(s)	412, 676, 710, 742, 941, 1403, 2210
HpyCH4III	ACNGT	6 cut(s)	197, 220, 239, 743, 1347, 1379
HpyCH4IV	ACGT	2 cut(s)	1005, 2345
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1319, 1429
HpySE526I	ACGT	2 cut(s)	1005, 2345
Hsp92I	GRCGYC	1 cut(s)	2353
Hsp92II	CATG	9 cut(s)	739, 1161, 1249, 1406, 1719, 1951, 2084, 2135, 2272
HspAI	GCGC	2 cut(s)	1292, 1841
KpnI	GGTACC	2 cut(s)	1000, 1335
Ksp22I	TGATCA	1 cut(s)	499
Kzo9I	GATC	7 cut(s)	499, 545, 1366, 1555, 1681, 1747, 2137
LguI	GCTCTTC	1 cut(s)	1119
LmnI	GCTCC	2 cut(s)	1261, 1429
Lsp1109I	GCAGC	5 cut(s)	1582, 1585, 1678, 1960, 1988
LweI	GCATC	4 cut(s)	475, 1729, 2156, 2230
MabI	ACCWGGT	1 cut(s)	1450
MaeI	CTAG	5 cut(s)	68, 663, 1295, 2112, 2174
MaeII	ACGT	2 cut(s)	1005, 2345
MaeIII	GTNAC	6 cut(s)	39, 220, 386, 811, 1057, 2033
MalI	GATC	7 cut(s)	501, 547, 1368, 1557, 1683, 1749, 2139
MbiI	CCGCTC	1 cut(s)	1300
MboI	GATC	7 cut(s)	499, 545, 1366, 1555, 1681, 1747, 2137
MfeI	CAATTG	1 cut(s)	847
MflI	RGATCY	1 cut(s)	1555
MhlI	GDGCHC	5 cut(s)	428, 1041, 1114, 1384, 1648
MlsI	TGGCCA	3 cut(s)	973, 1765, 1777
MluNI	TGGCCA	3 cut(s)	973, 1765, 1777
MlyI	GAGTC	3 cut(s)	308, 377, 1401
MmeI	TCCRAC	1 cut(s)	1767
Mox20I	TGGCCA	3 cut(s)	973, 1765, 1777
Mph1103I	ATGCAT	1 cut(s)	1721
MscI	TGGCCA	3 cut(s)	973, 1765, 1777
MslI	CAYNNNNRTG	1 cut(s)	1771
Msp20I	TGGCCA	3 cut(s)	973, 1765, 1777
MspA1I	CMGCKG	1 cut(s)	1322
MspCI	CTTAAG	1 cut(s)	2156
MspI	CCGG	1 cut(s)	1481
MspR9I	CCNGG	4 cut(s)	1083, 1452, 1696, 1943
MunI	CAATTG	1 cut(s)	847
Mva1269I	GAATGC	1 cut(s)	2334
MvaI	CCWGG	4 cut(s)	1083, 1452, 1696, 1943
MwoI	GCNNNNNNNGC	2 cut(s)	1319, 1429
NdeII	GATC	7 cut(s)	499, 545, 1366, 1555, 1681, 1747, 2137
NlaIII	CATG	9 cut(s)	739, 1161, 1249, 1406, 1719, 1951, 2084, 2135, 2272
NlaIV	GGNNCC	4 cut(s)	456, 998, 1040, 1333
NmuCI	GTSAC	5 cut(s)	39, 220, 386, 811, 2033
NsiI	ATGCAT	1 cut(s)	1721
NspI	RCATGY	2 cut(s)	1406, 1719
OliI	CACNNNNGTG	1 cut(s)	1771
PaeI	GCATGC	1 cut(s)	1719
PciSI	GCTCTTC	1 cut(s)	1119
PcsI	WCGNNNNNNNCGW	1 cut(s)	1444
PctI	GAATGC	1 cut(s)	2334
PfeI	GAWTC	7 cut(s)	160, 248, 626, 1673, 1914, 2027, 2093
PfoI	TCCNGGA	1 cut(s)	1941
PkrI	GCNGC	5 cut(s)	1597, 1600, 1693, 1975, 1978
PleI	GAGTC	3 cut(s)	307, 376, 1400
PpsI	GAGTC	3 cut(s)	307, 376, 1400
PshBI	ATTAAT	1 cut(s)	2066
Psp124BI	GAGCTC	1 cut(s)	428
Psp1406I	AACGTT	2 cut(s)	1005, 2345
Psp6I	CCWGG	4 cut(s)	1081, 1450, 1694, 1941
PspFI	CCCAGC	1 cut(s)	1551
PspGI	CCWGG	4 cut(s)	1081, 1450, 1694, 1941
PspN4I	GGNNCC	4 cut(s)	456, 998, 1040, 1333
PspPI	GGNCC	2 cut(s)	821, 1470
PstI	CTGCAG	3 cut(s)	820, 1978, 2286
PstNI	CAGNNNCTG	3 cut(s)	218, 542, 824
PsuI	RGATCY	1 cut(s)	1555
PvuII	CAGCTG	1 cut(s)	1322
RsaI	GTAC	9 cut(s)	310, 877, 998, 1333, 1349, 1704, 1731, 2078, 2104
RsaNI	GTAC	9 cut(s)	309, 876, 997, 1332, 1348, 1703, 1730, 2077, 2103
RseI	CAYNNNNRTG	1 cut(s)	1771
SacI	GAGCTC	1 cut(s)	428
SapI	GCTCTTC	1 cut(s)	1119
SatI	GCNGC	5 cut(s)	1596, 1599, 1692, 1974, 1977
Sau3AI	GATC	7 cut(s)	499, 545, 1366, 1555, 1681, 1747, 2137
Sau96I	GGNCC	2 cut(s)	821, 1470
SchI	GAGTC	3 cut(s)	308, 377, 1401
ScrFI	CCNGG	4 cut(s)	1083, 1452, 1696, 1943
SduI	GDGCHC	5 cut(s)	428, 1041, 1114, 1384, 1648
SexAI	ACCWGGT	1 cut(s)	1450
SfaNI	GCATC	4 cut(s)	475, 1729, 2156, 2230
SfcI	CTRYAG	4 cut(s)	816, 1387, 1974, 2282
SinI	GGWCC	1 cut(s)	1470
SmiMI	CAYNNNNRTG	1 cut(s)	1771
SmlI	CTYRAG	1 cut(s)	2156
SmoI	CTYRAG	1 cut(s)	2156
SphI	GCATGC	1 cut(s)	1719
SsiI	CCGC	5 cut(s)	1300, 1473, 1769, 2018, 2180
SspI	AATATT	1 cut(s)	268
SspMI	CTAG	5 cut(s)	68, 663, 1295, 2112, 2174
SstI	GAGCTC	1 cut(s)	428
StyD4I	CCNGG	4 cut(s)	1081, 1450, 1694, 1941
StyI	CCWWGG	3 cut(s)	1260, 1397, 2111
TaaI	ACNGT	6 cut(s)	197, 220, 239, 743, 1347, 1379
TaiI	ACGT	2 cut(s)	1008, 2348
TaqI	TCGA	2 cut(s)	895, 1917
TaqII	GACCGA	1 cut(s)	182
TatI	WGTACW	3 cut(s)	308, 875, 2102
TfiI	GAWTC	7 cut(s)	160, 248, 626, 1673, 1914, 2027, 2093
TseFI	GTSAC	5 cut(s)	39, 220, 386, 811, 2033
TseI	GCWGC	5 cut(s)	1595, 1598, 1691, 1973, 1976
Tsp45I	GTSAC	5 cut(s)	39, 220, 386, 811, 2033
TspDTI	ATGAA	9 cut(s)	204, 597, 639, 651, 669, 903, 1281, 1653, 2021
TspGWI	ACGGA	2 cut(s)	45, 601
Vha464I	CTTAAG	1 cut(s)	2156
VneI	GTGCAC	1 cut(s)	1380
VpaK11BI	GGWCC	1 cut(s)	1470
VspI	ATTAAT	1 cut(s)	2066
XapI	RAATTY	1 cut(s)	1138
XceI	RCATGY	2 cut(s)	1406, 1719
XcmI	CCANNNNNNNNNTGG	2 cut(s)	733, 1692
XmaJI	CCTAGG	1 cut(s)	2111
XspI	CTAG	5 cut(s)	68, 663, 1295, 2112, 2174
Zsp2I	ATGCAT	1 cut(s)	1721

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.