Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0041977.1

Orthogroup ID

OG0006904

Physical Location & Seq

Genomic Coordinates Forward (+)

1748 .. 4664

Gene Structure 2917 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0041977.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1356 bp

atgctttttgggcttctgtcattgttgatgggtcactggattgtttttgtggccaagatttgtgttaaatcttcatcatgggccttcagcagccggttctttccttgtgctttggagcaagagatcagtgtgattcaacatgtactttttgcgagtccggagtatctgaacaagtcagtttctagagtggaagtgaaaactatgtctcatgaatattgtcctaagggtcatgagtcctttgcttcttatgaaagtcttgaacagcttcaccgattaatattcgtgcttggcatgactcacgttgtttacagtttctttgccattgtcatggccatgattaagatttatagctggagaagatgggaaaatgaagctaaagctaaggcaattcaaacctttaaagataccgaagaaactaagcgaatcagaagattgtcgacattcatagttcaccatgcatctcatccatggagccagcacaagtatcttgtttggctgctttgtttcagccgccagttctggagttctataaaccgaccttcatatatggctttgcgatttggattcatcacttcaactcacagtgcaaaaggatgtggcagtaaagatcatgggactctttgcactgctgactctgctatagtggtaaaattggctgtggaaatcatggaagaaagtccatatatggaaaatcaccagtttaaactaagggatgatctcttttggttcaagaggccctggcttcttttacggctaatacaactgatatccttccagaattcattcgagatggctactttcctctggtctctgtgggaaattaaacatccttcatgtttcatggacaatcatactttcctcgtgatccgcttgacatttggggtagtctctcagttctggtgtagcttcattacattcccactctatgttatcatcacacaaatgggttcaagcttcaagaaatctgtagtttccgaaaatgtaagacaattgctatctggatggaaaaggagagtgaaggcgagacaaagtacttcatctaataagactggactcctgaattcatcatcaacatcaacagtagcattctcatcagattctagcaaagtttgtagttctttttcctcgaacagcgtggaagggagctcagtctcctccagggtccaaaacacatcctcccgacatctaaagtccaatgtgcagctaggtgaagttagtgagatcgatgagaagtcagagtctgagctctgcacgcaaacactctctgctttgatgaaagattttgacgtttatgaagaatacgaggaagatgaagaagaggactaccatgaggatgataacagtatcaaagggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0016020 GO:0044464 GO:0050896 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mlo

Protein Analysis

451

Amino Acids

52.04

Weight (kDa)

7.63

Isoelectric Point (pI)

51.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006904)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g11630 FvH4_1g11630 FvH4_1g11630 FvH4_1g11630 FvH4_1g11630 FvH4_1g11630 FvH4_1g11630 FvH4_1g11630 FvH4_1g11630 FvH4_1g11630
malus_domestica	MD02G1129400.v1.1
prunus_persica	Prupe.7G170200_v2.0.a1 Prupe.7G170200_v2.0.a1 Prupe.7G170200_v2.0.a1
pyrus_communis	pycom02g10130
rosa_chinensis	RchiOBHm_Chr2g0099221
rosa_laevigata	RLG00000016862
rosa_multiflora	Rmu_co8508313.1_g000001 Rmu_sc0041977.1_g000001
rosa_roxburghii	Rroxscaffold_2G00143310
rosa_rugosa	Rorug02G0078100
rosa_samantha	Rh2AG127100 Rh2BG130100 Rh2CG131300 Rh2DG131700
rosa_wichuraiana	Rw2G009800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	437
AccIII	TCCGGA	1 cut(s)	157
AciI	CCGC	2 cut(s)	511, 868
AclWI	GGATC	1 cut(s)	859
AcoI	YGGCCR	2 cut(s)	51, 330
AcsI	RAATTY	2 cut(s)	778, 1060
AcuI	CTGAAG	1 cut(s)	70
AfaI	GTAC	2 cut(s)	144, 1033
AflIII	ACRYGT	1 cut(s)	139
AgsI	TTSAA	7 cut(s)	137, 260, 392, 576, 730, 951, 958
AjnI	CCWGG	2 cut(s)	737, 1157
AluBI	AGCT	9 cut(s)	265, 351, 374, 380, 906, 954, 1146, 1204, 1246
AluI	AGCT	9 cut(s)	265, 351, 374, 380, 906, 954, 1146, 1204, 1246
Alw21I	GWGCWC	2 cut(s)	1148, 1248
Alw26I	GTCTC	5 cut(s)	210, 813, 892, 1018, 1156
AlwI	GGATC	1 cut(s)	859
AlwNI	CAGNNNCTG	1 cut(s)	1241
Aor13HI	TCCGGA	1 cut(s)	157
AoxI	GGCC	4 cut(s)	51, 81, 330, 734
ApeKI	GCWGC	3 cut(s)	90, 496, 1201
ApoI	RAATTY	2 cut(s)	778, 1060
AseI	ATTAAT	1 cut(s)	275
Asp700I	GAANNNNTTC	2 cut(s)	264, 782
AspS9I	GGNCC	3 cut(s)	81, 735, 1162
AsuHPI	GGTGA	4 cut(s)	260, 443, 686, 1220
AvaII	GGWCC	1 cut(s)	1162
AxyI	CCTNAGG	1 cut(s)	222
BalI	TGGCCA	2 cut(s)	53, 332
BanII	GRGCYC	2 cut(s)	1148, 1248
BauI	CACGAG	1 cut(s)	860
Bbv12I	GWGCWC	2 cut(s)	1148, 1248
BbvI	GCAGC	3 cut(s)	102, 483, 1213
BccI	CCATC	4 cut(s)	22, 354, 784, 996
BceAI	ACGGC	1 cut(s)	767
BciT130I	CCWGG	2 cut(s)	739, 1159
BcoDI	GTCTC	5 cut(s)	210, 813, 892, 1018, 1156
BfaI	CTAG	3 cut(s)	183, 1101, 1205
BfmI	CTRYAG	2 cut(s)	639, 966
BisI	GCNGC	4 cut(s)	91, 497, 511, 1202
BlsI	GCNGC	4 cut(s)	92, 498, 512, 1203
BmcAI	AGTACT	1 cut(s)	1033
Bme1390I	CCNGG	2 cut(s)	739, 1159
Bme18I	GGWCC	1 cut(s)	1162
BmgT120I	GGNCC	3 cut(s)	81, 735, 1162
BmiI	GGNNCC	2 cut(s)	473, 1163
BmrFI	CCNGG	2 cut(s)	739, 1159
BmsI	GCATC	1 cut(s)	467
BpmI	CTGGAG	3 cut(s)	373, 541, 1141
Bpu10I	CCTNAGC	1 cut(s)	381
Bsa29I	ATCGAT	1 cut(s)	1224
BsaI	GGTCTC	1 cut(s)	813
BsaJI	CCNNGG	3 cut(s)	467, 737, 1158
BsaWI	WCCGGW	1 cut(s)	157
BsaXI	ACNNNNNCTCC	2 cut(s)	1160, 1190
Bse118I	RCCGGY	1 cut(s)	93
Bse1I	ACTGG	4 cut(s)	41, 514, 697, 1054
Bse21I	CCTNAGG	1 cut(s)	222
BseAI	TCCGGA	1 cut(s)	157
BseBI	CCWGG	2 cut(s)	739, 1159
BseCI	ATCGAT	1 cut(s)	1224
BseDI	CCNNGG	3 cut(s)	467, 737, 1158
BseGI	GGATG	7 cut(s)	463, 599, 718, 826, 1007, 1172, 1339
BseMII	CTCAG	3 cut(s)	905, 1161, 1233
BseNI	ACTGG	4 cut(s)	41, 514, 697, 1054
BseRI	GAGGAG	1 cut(s)	1144
BseXI	GCAGC	3 cut(s)	102, 483, 1213
BsgI	GTGCAG	2 cut(s)	1220, 1234
BshFI	GGCC	4 cut(s)	53, 83, 332, 736
BshVI	ATCGAT	1 cut(s)	1224
BsiHKAI	GWGCWC	2 cut(s)	1148, 1248
BsiSI	CCGG	2 cut(s)	94, 158
BslFI	GGGAC	1 cut(s)	628
BsmAI	GTCTC	5 cut(s)	210, 813, 892, 1018, 1156
BsmFI	GGGAC	1 cut(s)	628
BsmI	GAATGC	1 cut(s)	1085
BsnI	GGCC	4 cut(s)	53, 83, 332, 736
Bso31I	GGTCTC	1 cut(s)	813
Bsp1286I	GDGCHC	2 cut(s)	1148, 1248
Bsp13I	TCCGGA	1 cut(s)	157
Bsp143I	GATC	5 cut(s)	123, 607, 715, 864, 1221
Bsp19I	CCATGG	1 cut(s)	467
BspACI	CCGC	2 cut(s)	511, 868
BspANI	GGCC	4 cut(s)	53, 83, 332, 736
BspCNI	CTCAG	3 cut(s)	904, 1160, 1234
BspDI	ATCGAT	1 cut(s)	1224
BspEI	TCCGGA	1 cut(s)	157
BspHI	TCATGA	2 cut(s)	208, 229
BspLI	GGNNCC	2 cut(s)	473, 1163
BspPI	GGATC	1 cut(s)	859
BspTNI	GGTCTC	1 cut(s)	813
BsrFI	RCCGGY	1 cut(s)	93
BsrI	ACTGG	4 cut(s)	41, 514, 697, 1054
BssAI	RCCGGY	1 cut(s)	93
BssECI	CCNNGG	3 cut(s)	467, 737, 1158
BssMI	GATC	5 cut(s)	123, 607, 715, 864, 1221
BssSI	CACGAG	1 cut(s)	860
BssT1I	CCWWGG	1 cut(s)	467
Bst2BI	CACGAG	1 cut(s)	860
Bst2UI	CCWGG	2 cut(s)	739, 1159
Bst4CI	ACNGT	4 cut(s)	311, 584, 1081, 1343
Bst6I	CTCTTC	1 cut(s)	1311
BstC8I	GCNNGC	2 cut(s)	476, 1253
BstDEI	CTNAG	7 cut(s)	222, 381, 417, 707, 891, 1147, 1242
BstDSI	CCRYGG	1 cut(s)	467
BstF5I	GGATG	7 cut(s)	463, 599, 718, 826, 1007, 1172, 1339
BstKTI	GATC	5 cut(s)	126, 610, 718, 867, 1224
BstMAI	GTCTC	5 cut(s)	210, 813, 892, 1018, 1156
BstMBI	GATC	5 cut(s)	123, 607, 715, 864, 1221
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 635, 1252
BstNI	CCWGG	2 cut(s)	739, 1159
BstNSI	RCATGY	1 cut(s)	143
BstSCI	CCNGG	2 cut(s)	737, 1157
BstSFI	CTRYAG	2 cut(s)	639, 966
BstV1I	GCAGC	3 cut(s)	102, 483, 1213
BstXI	CCANNNNNNTGG	1 cut(s)	328
Bsu15I	ATCGAT	1 cut(s)	1224
Bsu36I	CCTNAGG	1 cut(s)	222
BsuRI	GGCC	4 cut(s)	53, 83, 332, 736
BsuTUI	ATCGAT	1 cut(s)	1224
BtgI	CCRYGG	1 cut(s)	467
BtsCI	GGATG	7 cut(s)	463, 599, 718, 826, 1007, 1172, 1339
BtsI	GCAGTG	1 cut(s)	624
BtsIMutI	CAGTG	4 cut(s)	34, 133, 589, 624
Cac8I	GCNNGC	2 cut(s)	476, 1253
CaiI	CAGNNNCTG	1 cut(s)	1241
CciI	TCATGA	2 cut(s)	208, 229
Cfr10I	RCCGGY	1 cut(s)	93
Cfr13I	GGNCC	3 cut(s)	81, 735, 1162
ClaI	ATCGAT	1 cut(s)	1224
Csp6I	GTAC	2 cut(s)	143, 1032
CviQI	GTAC	2 cut(s)	143, 1032
DdeI	CTNAG	7 cut(s)	222, 381, 417, 707, 891, 1147, 1242
DpnI	GATC	5 cut(s)	125, 609, 717, 866, 1223
DpnII	GATC	5 cut(s)	123, 607, 715, 864, 1221
DraI	TTTAAA	2 cut(s)	400, 703
EaeI	YGGCCR	2 cut(s)	51, 330
Eam1104I	CTCTTC	1 cut(s)	1311
EarI	CTCTTC	1 cut(s)	1311
Ecl136II	GAGCTC	2 cut(s)	1146, 1246
Eco130I	CCWWGG	1 cut(s)	467
Eco24I	GRGCYC	2 cut(s)	1148, 1248
Eco31I	GGTCTC	1 cut(s)	813
Eco32I	GATATC	1 cut(s)	768
Eco47I	GGWCC	1 cut(s)	1162
Eco53kI	GAGCTC	2 cut(s)	1146, 1246
Eco57I	CTGAAG	1 cut(s)	70
Eco81I	CCTNAGG	1 cut(s)	222
EcoICRI	GAGCTC	2 cut(s)	1146, 1246
EcoO109I	RGGNCCY	1 cut(s)	735
EcoRI	GAATTC	2 cut(s)	778, 1060
EcoRII	CCWGG	2 cut(s)	737, 1157
EcoRV	GATATC	1 cut(s)	768
EcoT14I	CCWWGG	1 cut(s)	467
EcoT22I	ATGCAT	1 cut(s)	460
EcoT38I	GRGCYC	2 cut(s)	1148, 1248
ErhI	CCWWGG	1 cut(s)	467
FaqI	GGGAC	1 cut(s)	628
FblI	GTMKAC	1 cut(s)	437
Fnu4HI	GCNGC	4 cut(s)	91, 497, 511, 1202
FokI	GGATG	7 cut(s)	450, 606, 725, 813, 1014, 1159, 1346
FriOI	GRGCYC	2 cut(s)	1148, 1248
Fsp4HI	GCNGC	4 cut(s)	91, 497, 511, 1202
FspBI	CTAG	3 cut(s)	183, 1101, 1205
GluI	GCNGC	4 cut(s)	91, 497, 511, 1202
GsuI	CTGGAG	3 cut(s)	373, 541, 1141
HaeIII	GGCC	4 cut(s)	53, 83, 332, 736
HapII	CCGG	2 cut(s)	94, 158
HincII	GTYRAC	1 cut(s)	438
HindII	GTYRAC	1 cut(s)	438
HindIII	AAGCTT	1 cut(s)	952
HpaII	CCGG	2 cut(s)	94, 158
HphI	GGTGA	4 cut(s)	260, 443, 686, 1220
Hpy166II	GTNNAC	3 cut(s)	307, 438, 451
Hpy188I	TCNGA	6 cut(s)	168, 428, 976, 1096, 1237, 1243
Hpy8I	GTNNAC	3 cut(s)	307, 438, 451
HpyAV	CCTTC	6 cut(s)	94, 549, 781, 840, 1012, 1133
HpyCH4III	ACNGT	4 cut(s)	311, 584, 1081, 1343
HpyCH4IV	ACGT	2 cut(s)	300, 1287
HpyCH4V	TGCA	5 cut(s)	458, 587, 624, 1201, 1251
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 635, 1252
HpyF3I	CTNAG	7 cut(s)	222, 381, 417, 707, 891, 1147, 1242
HpySE526I	ACGT	2 cut(s)	300, 1287
Kpn2I	TCCGGA	1 cut(s)	157
Kzo9I	GATC	5 cut(s)	123, 607, 715, 864, 1221
LmnI	GCTCC	3 cut(s)	115, 471, 1143
Lsp1109I	GCAGC	3 cut(s)	102, 483, 1213
LweI	GCATC	1 cut(s)	467
MaeI	CTAG	3 cut(s)	183, 1101, 1205
MaeII	ACGT	2 cut(s)	300, 1287
MaeIII	GTNAC	1 cut(s)	32
MalI	GATC	5 cut(s)	125, 609, 717, 866, 1223
MboI	GATC	5 cut(s)	123, 607, 715, 864, 1221
MboII	GAAGA	9 cut(s)	63, 369, 422, 441, 683, 1307, 1319, 1325, 1328
MfeI	CAATTG	1 cut(s)	989
MhlI	GDGCHC	2 cut(s)	1148, 1248
MlsI	TGGCCA	2 cut(s)	53, 332
MluCI	AATT	6 cut(s)	387, 650, 778, 819, 989, 1060
MluNI	TGGCCA	2 cut(s)	53, 332
MlyI	GAGTC	7 cut(s)	163, 242, 289, 610, 626, 1047, 1247
MnlI	CCTC	9 cut(s)	726, 812, 869, 1135, 1165, 1186, 1297, 1312, 1324
Mox20I	TGGCCA	2 cut(s)	53, 332
Mph1103I	ATGCAT	1 cut(s)	460
MroI	TCCGGA	1 cut(s)	157
MroXI	GAANNNNTTC	2 cut(s)	264, 782
MscI	TGGCCA	2 cut(s)	53, 332
MseI	TTAA	6 cut(s)	66, 275, 339, 399, 702, 822
MslI	CAYNNNNRTG	4 cut(s)	326, 332, 941, 1332
Msp20I	TGGCCA	2 cut(s)	53, 332
MspI	CCGG	2 cut(s)	94, 158
MspR9I	CCNGG	2 cut(s)	739, 1159
MssI	GTTTAAAC	1 cut(s)	703
MunI	CAATTG	1 cut(s)	989
Mva1269I	GAATGC	1 cut(s)	1085
MvaI	CCWGG	2 cut(s)	739, 1159
MwoI	GCNNNNNNNGC	3 cut(s)	10, 635, 1252
NcoI	CCATGG	1 cut(s)	467
NdeII	GATC	5 cut(s)	123, 607, 715, 864, 1221
NlaIV	GGNNCC	2 cut(s)	473, 1163
NmuCI	GTSAC	1 cut(s)	32
NsiI	ATGCAT	1 cut(s)	460
NspI	RCATGY	1 cut(s)	143
PagI	TCATGA	2 cut(s)	208, 229
PciI	ACATGT	1 cut(s)	139
PctI	GAATGC	1 cut(s)	1085
PdmI	GAANNNNTTC	2 cut(s)	264, 782
PfeI	GAWTC	4 cut(s)	133, 423, 564, 1097
PkrI	GCNGC	4 cut(s)	92, 498, 512, 1203
PleI	GAGTC	7 cut(s)	162, 241, 289, 610, 626, 1047, 1246
PmeI	GTTTAAAC	1 cut(s)	703
PpsI	GAGTC	7 cut(s)	162, 241, 289, 610, 626, 1047, 1246
PscI	ACATGT	1 cut(s)	139
PshBI	ATTAAT	1 cut(s)	275
Psp124BI	GAGCTC	2 cut(s)	1148, 1248
Psp6I	CCWGG	2 cut(s)	737, 1157
PspGI	CCWGG	2 cut(s)	737, 1157
PspN4I	GGNNCC	2 cut(s)	473, 1163
PspPI	GGNCC	3 cut(s)	81, 735, 1162
PstNI	CAGNNNCTG	1 cut(s)	1241
RsaI	GTAC	2 cut(s)	144, 1033
RsaNI	GTAC	2 cut(s)	143, 1032
RseI	CAYNNNNRTG	4 cut(s)	326, 332, 941, 1332
SacI	GAGCTC	2 cut(s)	1148, 1248
SalI	GTCGAC	1 cut(s)	436
SaqAI	TTAA	6 cut(s)	66, 275, 339, 399, 702, 822
SatI	GCNGC	4 cut(s)	91, 497, 511, 1202
Sau3AI	GATC	5 cut(s)	123, 607, 715, 864, 1221
Sau96I	GGNCC	3 cut(s)	81, 735, 1162
ScaI	AGTACT	1 cut(s)	1033
SchI	GAGTC	7 cut(s)	163, 242, 289, 610, 626, 1047, 1247
ScrFI	CCNGG	2 cut(s)	739, 1159
SduI	GDGCHC	2 cut(s)	1148, 1248
SfaNI	GCATC	1 cut(s)	467
SfcI	CTRYAG	2 cut(s)	639, 966
SinI	GGWCC	1 cut(s)	1162
SmiMI	CAYNNNNRTG	4 cut(s)	326, 332, 941, 1332
Sse9I	AATT	6 cut(s)	387, 650, 778, 819, 989, 1060
SsiI	CCGC	2 cut(s)	511, 868
SspI	AATATT	2 cut(s)	215, 279
SspMI	CTAG	3 cut(s)	183, 1101, 1205
SstI	GAGCTC	2 cut(s)	1148, 1248
StyD4I	CCNGG	2 cut(s)	737, 1157
StyI	CCWWGG	1 cut(s)	467
TaaI	ACNGT	4 cut(s)	311, 584, 1081, 1343
TaiI	ACGT	2 cut(s)	303, 1290
TaqI	TCGA	4 cut(s)	437, 786, 1127, 1224
TasI	AATT	6 cut(s)	387, 650, 778, 819, 989, 1060
TatI	WGTACW	2 cut(s)	142, 1031
TauI	GCSGC	1 cut(s)	513
TfiI	GAWTC	4 cut(s)	133, 423, 564, 1097
Tru1I	TTAA	6 cut(s)	66, 275, 339, 399, 702, 822
Tru9I	TTAA	6 cut(s)	66, 275, 339, 399, 702, 822
TscAI	CASTG	4 cut(s)	41, 133, 589, 631
TseFI	GTSAC	1 cut(s)	32
TseI	GCWGC	3 cut(s)	90, 496, 1201
Tsp45I	GTSAC	1 cut(s)	32
TspRI	CASTG	4 cut(s)	41, 133, 589, 631
VpaK11BI	GGWCC	1 cut(s)	1162
VspI	ATTAAT	1 cut(s)	275
XapI	RAATTY	2 cut(s)	778, 1060
XbaI	TCTAGA	1 cut(s)	182
XceI	RCATGY	1 cut(s)	143
XmiI	GTMKAC	1 cut(s)	437
XmnI	GAANNNNTTC	2 cut(s)	264, 782
XspI	CTAG	3 cut(s)	183, 1101, 1205
ZrmI	AGTACT	1 cut(s)	1033
Zsp2I	ATGCAT	1 cut(s)	460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.