Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006904

Physical Location & Seq

Genomic Coordinates Forward (+)

81295666 .. 81301359

Gene Structure 5694 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00143310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1482 bp

ATGGAGGAGAGGGAGGGTCGATCCTTGGCTGAAACACCCACATGGACTGTAGCTACTGTGATCACTGTCTTGATTTCTCTTGGGTTCTTCTTTCATTGCTCTTTGAAACATTTTGGAAAGTGGTTGGACAAGACTAAGAAGAAGTCTATACTTGCTGCTTTGGAAAAGATCCAAGAAGTTAATTTGATCAATGTTGAAGCAGAGCTGATGCTTTTTGGGCTTCTGTCATTGCTGATGGGTCACTGGATTGTTTTTGTGGCCAAGATTTGTGTTAAATCTTCATCATGGGCCTTCAGCAGCCGGTTCTTTCCTTGTGCTTTGGAGCAAGAGATCAGTGTGATTCAACATGTACTTTTTGCGAGTCCGGAGTATCTGAACAAGTCAGTTTCTAGAGTGGAAGTGAAAACTATGTCTCATGAATATTGTCCTAAGGGTCATGAGTCCTTTGCTTCTTATGAAAGTCTTGAACAGCTTCACCGATTAATATTCGTGCTTGGCATGACTCACGTTGTTTACAGTTTCTTTGCCATTGTCATGGCCATGATTAAGATATGTAGCTGGAGAACATGGGAAAATGAAGCTAAAGCTAAGGCAATTCAAACCTTTAAAGGTGAAGAATTGATTTATACCTCTCTGGATATACGCCTTATGTTGCATTATTCTAGATTTTCATGGAAGCAACATTTACTTTTGGCTTTCCTTCCTTCCAGCCATTGTAAGCCATTAATTCATTTGATCCTGCTTATCGGCACTAAACTGCATCGAATAGTGGTAAAATTGGCTGTGGAAATCATGGAAGAAAGTCCATATATGGAAAATCACCAGTTTAAACTAAGGGATGATCTCTTTTGGTTCAAGAGGCCCTGGCTTCTTTTACGGCTAATACAACTGATATCCTTCCAGAATTCATTCGAGATGGCTACTTTCCTCTGGTCTCTGTGGGAAATTAAACATCCTTCATGTTTCATGGACAATCATACTTTCCTCGTGATCCGCTTGACATTTGGGGTAGTCTCCCAGTTCTGGTGTAGCTTCATTACATTCCCACTCTATGTTATCATCACACAAATGGGTTCAAGCTTCAAGAAATCTGTAGTTTCCGAAAATGTAAGACAATCGCTATCTGGATGGAAAAGGAGAGTGAAGGCGAGACAAAGTACTTCATCTAATAAGACTGGACTCCTGAATTCATCATCAACATCAACAGTAGCATTCTCATCAGATTCTAGCAAAGTTTGTAGTTCTTTTTCCTCGAACAGCGTGGAAGGGAGCTCAGTCTCCTCCAGGGTCCAAAACACATCCTCCCGACATCTAAAGTCCAATGTGCAGCTAGGTGAAGTTAGTGAGATCGACGAGAAGTCAGAGTCTGAGCTCCGCACGCAAACACTCTCTGCTTTGATGAAAGATTATGACATTTATGAAGAATATGAAGAAGATGAAGAAGAGGACTACCATGAGGATGATAACAGTATCAAAGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0016020 GO:0044464 GO:0050896 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mlo

Protein Analysis

493

Amino Acids

56.88

Weight (kDa)

7.01

Isoelectric Point (pI)

43.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mlo	PF03094	6 - 207	4.2e-46	Mlo family
Mlo	PF03094	225 - 404	1e-56	Mlo family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006904)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g11630 FvH4_1g11630 FvH4_1g11630 FvH4_1g11630 FvH4_1g11630 FvH4_1g11630 FvH4_1g11630 FvH4_1g11630 FvH4_1g11630 FvH4_1g11630
malus_domestica	MD02G1129400.v1.1
prunus_persica	Prupe.7G170200_v2.0.a1 Prupe.7G170200_v2.0.a1 Prupe.7G170200_v2.0.a1
pyrus_communis	pycom02g10130
rosa_chinensis	RchiOBHm_Chr2g0099221
rosa_laevigata	RLG00000016862
rosa_multiflora	Rmu_co8508313.1_g000001 Rmu_sc0041977.1_g000001
rosa_roxburghii	Rroxscaffold_2G00143310
rosa_rugosa	Rorug02G0078100
rosa_samantha	Rh2AG127100 Rh2BG130100 Rh2CG131300 Rh2DG131700
rosa_wichuraiana	Rw2G009800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	364
AciI	CCGC	2 cut(s)	994, 1375
AclWI	GGATC	4 cut(s)	15, 163, 730, 985
AcoI	YGGCCR	2 cut(s)	258, 537
AcsI	RAATTY	2 cut(s)	904, 1186
AcuI	CTGAAG	1 cut(s)	277
AfaI	GTAC	2 cut(s)	351, 1159
AfiI	CCNNNNNNNGG	1 cut(s)	1023
AflIII	ACRYGT	1 cut(s)	346
AgsI	TTSAA	8 cut(s)	106, 197, 344, 467, 599, 856, 1077, 1084
AhdI	GACNNNNNGTC	1 cut(s)	1357
AjnI	CCWGG	2 cut(s)	863, 1283
Alw21I	GWGCWC	2 cut(s)	1274, 1374
Alw26I	GTCTC	5 cut(s)	417, 939, 1018, 1144, 1282
AlwI	GGATC	4 cut(s)	15, 163, 730, 985
AlwNI	CAGNNNCTG	1 cut(s)	1367
Aor13HI	TCCGGA	1 cut(s)	364
AoxI	GGCC	4 cut(s)	258, 288, 537, 860
ApeKI	GCWGC	3 cut(s)	155, 297, 1327
ApoI	RAATTY	2 cut(s)	904, 1186
AseI	ATTAAT	2 cut(s)	482, 725
Asp700I	GAANNNNTTC	2 cut(s)	471, 908
AspS9I	GGNCC	3 cut(s)	288, 861, 1288
AsuHPI	GGTGA	4 cut(s)	467, 623, 812, 1346
AvaII	GGWCC	1 cut(s)	1288
AxyI	CCTNAGG	1 cut(s)	429
BalI	TGGCCA	2 cut(s)	260, 539
BanII	GRGCYC	2 cut(s)	1274, 1374
BauI	CACGAG	1 cut(s)	986
Bbv12I	GWGCWC	2 cut(s)	1274, 1374
BbvI	GCAGC	3 cut(s)	142, 309, 1339
BccI	CCATC	3 cut(s)	229, 910, 1122
BceAI	ACGGC	1 cut(s)	893
BciT130I	CCWGG	2 cut(s)	865, 1285
BclI	TGATCA	2 cut(s)	60, 186
BcoDI	GTCTC	5 cut(s)	417, 939, 1018, 1144, 1282
BfaI	CTAG	4 cut(s)	390, 663, 1227, 1331
BfmI	CTRYAG	2 cut(s)	48, 1092
BisI	GCNGC	3 cut(s)	156, 298, 1328
BlsI	GCNGC	3 cut(s)	157, 299, 1329
BmcAI	AGTACT	1 cut(s)	1159
Bme1390I	CCNGG	2 cut(s)	865, 1285
Bme18I	GGWCC	1 cut(s)	1288
BmeRI	GACNNNNNGTC	1 cut(s)	1357
BmgT120I	GGNCC	3 cut(s)	288, 861, 1288
BmiI	GGNNCC	1 cut(s)	1289
BmrFI	CCNGG	2 cut(s)	865, 1285
BmrI	ACTGGG	1 cut(s)	1012
BmsI	GCATC	2 cut(s)	198, 769
BmuI	ACTGGG	1 cut(s)	1012
BpmI	CTGGAG	2 cut(s)	580, 1267
Bpu10I	CCTNAGC	1 cut(s)	588
BsaI	GGTCTC	1 cut(s)	939
BsaJI	CCNNGG	3 cut(s)	24, 863, 1284
BsaWI	WCCGGW	1 cut(s)	364
BsaXI	ACNNNNNCTCC	2 cut(s)	1286, 1316
Bsc4I	CCNNNNNNNGG	1 cut(s)	1023
Bse118I	RCCGGY	1 cut(s)	300
Bse1I	ACTGG	4 cut(s)	248, 823, 1018, 1180
Bse21I	CCTNAGG	1 cut(s)	429
Bse3DI	GCAATG	2 cut(s)	94, 227
BseAI	TCCGGA	1 cut(s)	364
BseBI	CCWGG	2 cut(s)	865, 1285
BseDI	CCNNGG	3 cut(s)	24, 863, 1284
BseGI	GGATG	5 cut(s)	844, 952, 1133, 1298, 1465
BseLI	CCNNNNNNNGG	1 cut(s)	1023
BseMI	GCAATG	2 cut(s)	94, 227
BseMII	CTCAG	2 cut(s)	1287, 1359
BseNI	ACTGG	4 cut(s)	248, 823, 1018, 1180
BseRI	GAGGAG	2 cut(s)	20, 1270
BseXI	GCAGC	3 cut(s)	142, 309, 1339
BsgI	GTGCAG	1 cut(s)	1346
BshFI	GGCC	4 cut(s)	260, 290, 539, 862
BsiHKAI	GWGCWC	2 cut(s)	1274, 1374
BsiSI	CCGG	2 cut(s)	301, 365
BslI	CCNNNNNNNGG	1 cut(s)	1023
BsmAI	GTCTC	5 cut(s)	417, 939, 1018, 1144, 1282
BsmI	GAATGC	1 cut(s)	1211
BsnI	GGCC	4 cut(s)	260, 290, 539, 862
Bso31I	GGTCTC	1 cut(s)	939
Bsp1286I	GDGCHC	2 cut(s)	1274, 1374
Bsp13I	TCCGGA	1 cut(s)	364
Bsp143I	GATC	9 cut(s)	20, 60, 168, 186, 330, 735, 841, 990, 1347
BspACI	CCGC	2 cut(s)	994, 1375
BspANI	GGCC	4 cut(s)	260, 290, 539, 862
BspCNI	CTCAG	2 cut(s)	1286, 1360
BspEI	TCCGGA	1 cut(s)	364
BspHI	TCATGA	2 cut(s)	415, 436
BspLI	GGNNCC	1 cut(s)	1289
BspPI	GGATC	4 cut(s)	15, 163, 730, 985
BspTNI	GGTCTC	1 cut(s)	939
BsrDI	GCAATG	2 cut(s)	94, 227
BsrFI	RCCGGY	1 cut(s)	300
BsrI	ACTGG	4 cut(s)	248, 823, 1018, 1180
BssAI	RCCGGY	1 cut(s)	300
BssECI	CCNNGG	3 cut(s)	24, 863, 1284
BssMI	GATC	9 cut(s)	20, 60, 168, 186, 330, 735, 841, 990, 1347
BssSI	CACGAG	1 cut(s)	986
BssT1I	CCWWGG	1 cut(s)	24
Bst2BI	CACGAG	1 cut(s)	986
Bst2UI	CCWGG	2 cut(s)	865, 1285
Bst4CI	ACNGT	6 cut(s)	49, 58, 67, 518, 1207, 1469
Bst6I	CTCTTC	1 cut(s)	1437
BstC8I	GCNNGC	1 cut(s)	1379
BstDEI	CTNAG	6 cut(s)	135, 429, 588, 833, 1273, 1368
BstF5I	GGATG	5 cut(s)	844, 952, 1133, 1298, 1465
BstKTI	GATC	9 cut(s)	23, 63, 171, 189, 333, 738, 844, 993, 1350
BstMAI	GTCTC	5 cut(s)	417, 939, 1018, 1144, 1282
BstMBI	GATC	9 cut(s)	20, 60, 168, 186, 330, 735, 841, 990, 1347
BstMWI	GCNNNNNNNGC	2 cut(s)	217, 1378
BstNI	CCWGG	2 cut(s)	865, 1285
BstNSI	RCATGY	1 cut(s)	350
BstSCI	CCNGG	2 cut(s)	863, 1283
BstSFI	CTRYAG	2 cut(s)	48, 1092
BstV1I	GCAGC	3 cut(s)	142, 309, 1339
BstX2I	RGATCY	1 cut(s)	168
BstXI	CCANNNNNNTGG	1 cut(s)	535
BstYI	RGATCY	1 cut(s)	168
Bsu36I	CCTNAGG	1 cut(s)	429
BsuRI	GGCC	4 cut(s)	260, 290, 539, 862
BtsCI	GGATG	5 cut(s)	844, 952, 1133, 1298, 1465
BtsIMutI	CAGTG	3 cut(s)	63, 241, 340
Cac8I	GCNNGC	1 cut(s)	1379
CaiI	CAGNNNCTG	1 cut(s)	1367
CciI	TCATGA	2 cut(s)	415, 436
Cfr10I	RCCGGY	1 cut(s)	300
Cfr13I	GGNCC	3 cut(s)	288, 861, 1288
Csp6I	GTAC	2 cut(s)	350, 1158
CviQI	GTAC	2 cut(s)	350, 1158
DdeI	CTNAG	6 cut(s)	135, 429, 588, 833, 1273, 1368
DpnI	GATC	9 cut(s)	22, 62, 170, 188, 332, 737, 843, 992, 1349
DpnII	GATC	9 cut(s)	20, 60, 168, 186, 330, 735, 841, 990, 1347
DraI	TTTAAA	2 cut(s)	607, 829
DriI	GACNNNNNGTC	1 cut(s)	1357
EaeI	YGGCCR	2 cut(s)	258, 537
Eam1104I	CTCTTC	1 cut(s)	1437
Eam1105I	GACNNNNNGTC	1 cut(s)	1357
EarI	CTCTTC	1 cut(s)	1437
Ecl136II	GAGCTC	2 cut(s)	1272, 1372
Eco130I	CCWWGG	1 cut(s)	24
Eco24I	GRGCYC	2 cut(s)	1274, 1374
Eco31I	GGTCTC	1 cut(s)	939
Eco32I	GATATC	1 cut(s)	894
Eco47I	GGWCC	1 cut(s)	1288
Eco53kI	GAGCTC	2 cut(s)	1272, 1372
Eco57I	CTGAAG	1 cut(s)	277
Eco81I	CCTNAGG	1 cut(s)	429
EcoICRI	GAGCTC	2 cut(s)	1272, 1372
EcoO109I	RGGNCCY	1 cut(s)	861
EcoRI	GAATTC	2 cut(s)	904, 1186
EcoRII	CCWGG	2 cut(s)	863, 1283
EcoRV	GATATC	1 cut(s)	894
EcoT14I	CCWWGG	1 cut(s)	24
EcoT38I	GRGCYC	2 cut(s)	1274, 1374
ErhI	CCWWGG	1 cut(s)	24
FbaI	TGATCA	2 cut(s)	60, 186
Fnu4HI	GCNGC	3 cut(s)	156, 298, 1328
FokI	GGATG	5 cut(s)	851, 939, 1140, 1285, 1472
FriOI	GRGCYC	2 cut(s)	1274, 1374
Fsp4HI	GCNGC	3 cut(s)	156, 298, 1328
FspBI	CTAG	4 cut(s)	390, 663, 1227, 1331
GluI	GCNGC	3 cut(s)	156, 298, 1328
GsuI	CTGGAG	2 cut(s)	580, 1267
HaeIII	GGCC	4 cut(s)	260, 290, 539, 862
HapII	CCGG	2 cut(s)	301, 365
HindIII	AAGCTT	1 cut(s)	1078
HinfI	GANTC	7 cut(s)	340, 361, 440, 502, 1179, 1223, 1364
HpaII	CCGG	2 cut(s)	301, 365
HphI	GGTGA	4 cut(s)	467, 623, 812, 1346
Hpy166II	GTNNAC	1 cut(s)	514
Hpy188I	TCNGA	5 cut(s)	375, 1102, 1222, 1363, 1369
Hpy8I	GTNNAC	1 cut(s)	514
Hpy99I	CGWCG	1 cut(s)	1355
HpyAV	CCTTC	7 cut(s)	301, 710, 714, 907, 966, 1138, 1259
HpyCH4III	ACNGT	6 cut(s)	49, 58, 67, 518, 1207, 1469
HpyCH4IV	ACGT	1 cut(s)	507
HpyCH4V	TGCA	3 cut(s)	655, 760, 1327
HpyF10VI	GCNNNNNNNGC	2 cut(s)	217, 1378
HpyF3I	CTNAG	6 cut(s)	135, 429, 588, 833, 1273, 1368
HpySE526I	ACGT	1 cut(s)	507
Kpn2I	TCCGGA	1 cut(s)	364
Ksp22I	TGATCA	2 cut(s)	60, 186
Kzo9I	GATC	9 cut(s)	20, 60, 168, 186, 330, 735, 841, 990, 1347
LmnI	GCTCC	3 cut(s)	322, 1269, 1377
Lsp1109I	GCAGC	3 cut(s)	142, 309, 1339
LweI	GCATC	2 cut(s)	198, 769
MaeI	CTAG	4 cut(s)	390, 663, 1227, 1331
MaeII	ACGT	1 cut(s)	507
MaeIII	GTNAC	1 cut(s)	239
MalI	GATC	9 cut(s)	22, 62, 170, 188, 332, 737, 843, 992, 1349
MboI	GATC	9 cut(s)	20, 60, 168, 186, 330, 735, 841, 990, 1347
MflI	RGATCY	1 cut(s)	168
MhlI	GDGCHC	2 cut(s)	1274, 1374
MlsI	TGGCCA	2 cut(s)	260, 539
MluCI	AATT	8 cut(s)	181, 594, 617, 726, 776, 904, 945, 1186
MluNI	TGGCCA	2 cut(s)	260, 539
MlyI	GAGTC	5 cut(s)	370, 449, 496, 1173, 1373
MmeI	TCCRAC	1 cut(s)	105
Mox20I	TGGCCA	2 cut(s)	260, 539
MroI	TCCGGA	1 cut(s)	364
MroXI	GAANNNNTTC	2 cut(s)	471, 908
MscI	TGGCCA	2 cut(s)	260, 539
MseI	TTAA	8 cut(s)	180, 273, 482, 546, 606, 725, 828, 948
MslI	CAYNNNNRTG	5 cut(s)	40, 533, 539, 1067, 1458
Msp20I	TGGCCA	2 cut(s)	260, 539
MspI	CCGG	2 cut(s)	301, 365
MspR9I	CCNGG	2 cut(s)	865, 1285
MssI	GTTTAAAC	1 cut(s)	829
Mva1269I	GAATGC	1 cut(s)	1211
MvaI	CCWGG	2 cut(s)	865, 1285
MwoI	GCNNNNNNNGC	2 cut(s)	217, 1378
NdeII	GATC	9 cut(s)	20, 60, 168, 186, 330, 735, 841, 990, 1347
NlaIV	GGNNCC	1 cut(s)	1289
NmuCI	GTSAC	1 cut(s)	239
NspI	RCATGY	1 cut(s)	350
PagI	TCATGA	2 cut(s)	415, 436
PciI	ACATGT	1 cut(s)	346
PctI	GAATGC	1 cut(s)	1211
PdmI	GAANNNNTTC	2 cut(s)	471, 908
PfeI	GAWTC	2 cut(s)	340, 1223
PkrI	GCNGC	3 cut(s)	157, 299, 1329
PleI	GAGTC	5 cut(s)	369, 448, 496, 1173, 1372
PmeI	GTTTAAAC	1 cut(s)	829
PpsI	GAGTC	5 cut(s)	369, 448, 496, 1173, 1372
PscI	ACATGT	1 cut(s)	346
PshBI	ATTAAT	2 cut(s)	482, 725
Psp124BI	GAGCTC	2 cut(s)	1274, 1374
Psp6I	CCWGG	2 cut(s)	863, 1283
PspGI	CCWGG	2 cut(s)	863, 1283
PspN4I	GGNNCC	1 cut(s)	1289
PspPI	GGNCC	3 cut(s)	288, 861, 1288
PstNI	CAGNNNCTG	1 cut(s)	1367
PsuI	RGATCY	1 cut(s)	168
RsaI	GTAC	2 cut(s)	351, 1159
RsaNI	GTAC	2 cut(s)	350, 1158
RseI	CAYNNNNRTG	5 cut(s)	40, 533, 539, 1067, 1458
SacI	GAGCTC	2 cut(s)	1274, 1374
SaqAI	TTAA	8 cut(s)	180, 273, 482, 546, 606, 725, 828, 948
SatI	GCNGC	3 cut(s)	156, 298, 1328
Sau3AI	GATC	9 cut(s)	20, 60, 168, 186, 330, 735, 841, 990, 1347
Sau96I	GGNCC	3 cut(s)	288, 861, 1288
ScaI	AGTACT	1 cut(s)	1159
SchI	GAGTC	5 cut(s)	370, 449, 496, 1173, 1373
ScrFI	CCNGG	2 cut(s)	865, 1285
SduI	GDGCHC	2 cut(s)	1274, 1374
SfaNI	GCATC	2 cut(s)	198, 769
SfcI	CTRYAG	2 cut(s)	48, 1092
SinI	GGWCC	1 cut(s)	1288
SmiMI	CAYNNNNRTG	5 cut(s)	40, 533, 539, 1067, 1458
Sse9I	AATT	8 cut(s)	181, 594, 617, 726, 776, 904, 945, 1186
SsiI	CCGC	2 cut(s)	994, 1375
SspI	AATATT	2 cut(s)	422, 486
SspMI	CTAG	4 cut(s)	390, 663, 1227, 1331
SstI	GAGCTC	2 cut(s)	1274, 1374
StyD4I	CCNGG	2 cut(s)	863, 1283
StyI	CCWWGG	1 cut(s)	24
TaaI	ACNGT	6 cut(s)	49, 58, 67, 518, 1207, 1469
TaiI	ACGT	1 cut(s)	510
TaqI	TCGA	5 cut(s)	19, 763, 912, 1253, 1350
TasI	AATT	8 cut(s)	181, 594, 617, 726, 776, 904, 945, 1186
TatI	WGTACW	2 cut(s)	349, 1157
TfiI	GAWTC	2 cut(s)	340, 1223
Tru1I	TTAA	8 cut(s)	180, 273, 482, 546, 606, 725, 828, 948
Tru9I	TTAA	8 cut(s)	180, 273, 482, 546, 606, 725, 828, 948
TscAI	CASTG	3 cut(s)	70, 248, 340
TseFI	GTSAC	1 cut(s)	239
TseI	GCWGC	3 cut(s)	155, 297, 1327
Tsp45I	GTSAC	1 cut(s)	239
TspRI	CASTG	3 cut(s)	70, 248, 340
VpaK11BI	GGWCC	1 cut(s)	1288
VspI	ATTAAT	2 cut(s)	482, 725
XapI	RAATTY	2 cut(s)	904, 1186
XbaI	TCTAGA	2 cut(s)	389, 662
XceI	RCATGY	1 cut(s)	350
XmnI	GAANNNNTTC	2 cut(s)	471, 908
XspI	CTAG	4 cut(s)	390, 663, 1227, 1331
ZrmI	AGTACT	1 cut(s)	1159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.