Rmu_ssc0000030.1_g000001

Ribosomal protein TL5, C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000030.1
OG0012519
Physical Location & Seq
Forward (+)
1 .. 1647
1647 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 539 bp
ccaagcccaccggccggtccatcgccagaaaacacttgctgaccaccgagaggaagcagattcaggccattctcaactccattgagctcccgtatttctgctccaccacatttccgctccagatccgagccgggtccgggtcgtcggttctacttgaatccggaaacgtcctacctgtcaagattcatagggacgaagagagtgggaagatactgaatttggtgtttgtttgggccgatgagggctccgagttgaaggtggatgttccggttacttttaaaggtgaagatgtttgcccaggtctcaaaaaaggcggccacctgaacaaaattagaacaagtctaaagtacctttgcccagccgaacatattcctcccaaaattgaggtggatatcagcaatctagatataggagatagggtgtgccttccagatgttaaggttcatccatccctgaagcttctaagcaagaatgatgtcatgcctatatgtaagatagttgcaactaagttggaaaccccagaactggcaggagtttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L25p Ribosomal_TL5_C

Protein Analysis

178

Amino Acids

19.52

Weight (kDa)

8.58

Isoelectric Point (pI)

38.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_TL5_C PF14693 84 - 168 1.7e-22 Ribosomal protein TL5, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012519)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66860
fragaria_vesca FvH4_1g15520
malus_domestica MD02G1167000.v1.1 MD15G1279600.v1.1
prunus_persica Prupe.7G137800_v2.0.a1 Prupe.7G137800_v2.0.a1 Prupe.7G137800_v2.0.a1
pyrus_communis pycom02g13450
rosa_chinensis RchiOBHm_Chr2g0104801
rosa_laevigata RLG00000017358
rosa_multiflora Rmu_ssc0000030.1_g000001
rosa_rugosa Rorug02G0123000
rosa_samantha Rh2AG172900 Rh2BG180500 Rh2CG178100 Rh2DG179100
rosa_wichuraiana Rw0G008670 Rw2G013510 Rw2G013590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 117
AccIII TCCGGA 1 cut(s) 160
AciI CCGC 2 cut(s) 115, 314
AclWI GGATC 1 cut(s) 117
AcoI YGGCCR 2 cut(s) 12, 315
AcsI RAATTY 1 cut(s) 216
AcuI CTGAAG 1 cut(s) 475
AfaI GTAC 1 cut(s) 349
AfiI CCNNNNNNNGG 4 cut(s) 14, 50, 137, 525
AgsI TTSAA 2 cut(s) 157, 255
AjnI CCWGG 1 cut(s) 297
AluBI AGCT 2 cut(s) 87, 459
AluI AGCT 2 cut(s) 87, 459
Alw21I GWGCWC 1 cut(s) 89
Alw26I GTCTC 1 cut(s) 307
AlwI GGATC 1 cut(s) 117
Aor13HI TCCGGA 1 cut(s) 160
AoxI GGCC 4 cut(s) 12, 65, 233, 315
ApoI RAATTY 1 cut(s) 216
Asp700I GAANNNNTTC 1 cut(s) 368
AspS9I GGNCC 3 cut(s) 17, 134, 233
AsuC2I CCSGG 2 cut(s) 132, 138
AsuHPI GGTGA 1 cut(s) 295
AvaII GGWCC 2 cut(s) 17, 134
BanII GRGCYC 2 cut(s) 89, 247
Bbv12I GWGCWC 1 cut(s) 89
BccI CCATC 2 cut(s) 28, 456
BciT130I CCWGG 1 cut(s) 299
BcnI CCSGG 2 cut(s) 132, 138
BcoDI GTCTC 1 cut(s) 307
BfaI CTAG 1 cut(s) 403
BisI GCNGC 1 cut(s) 315
BlsI GCNGC 1 cut(s) 316
Bme1390I CCNGG 3 cut(s) 132, 138, 299
Bme18I GGWCC 2 cut(s) 17, 134
BmgT120I GGNCC 3 cut(s) 17, 134, 233
BmiI GGNNCC 2 cut(s) 135, 246
BmrFI CCNGG 3 cut(s) 132, 138, 299
BpmI CTGGAG 1 cut(s) 103
BpuMI CCSGG 2 cut(s) 132, 138
BsaI GGTCTC 1 cut(s) 307
BsaJI CCNNGG 1 cut(s) 297
BsaWI WCCGGW 2 cut(s) 160, 267
BsaXI ACNNNNNCTCC 2 cut(s) 404, 434
Bsc4I CCNNNNNNNGG 4 cut(s) 14, 50, 137, 525
Bse118I RCCGGY 2 cut(s) 10, 14
Bse1I ACTGG 1 cut(s) 530
BseAI TCCGGA 1 cut(s) 160
BseBI CCWGG 1 cut(s) 299
BseDI CCNNGG 1 cut(s) 297
BseGI GGATG 3 cut(s) 267, 444, 448
BseLI CCNNNNNNNGG 4 cut(s) 14, 50, 137, 525
BseNI ACTGG 1 cut(s) 530
BseX3I CGGCCG 1 cut(s) 12
BseYI CCCAGC 1 cut(s) 357
Bsh1285I CGRYCG 1 cut(s) 15
BshFI GGCC 4 cut(s) 14, 67, 235, 317
BsiEI CGRYCG 1 cut(s) 15
BsiHKAI GWGCWC 1 cut(s) 89
BsiSI CCGG 6 cut(s) 11, 15, 131, 137, 161, 268
BslFI GGGAC 1 cut(s) 205
BslI CCNNNNNNNGG 4 cut(s) 14, 50, 137, 525
BsmAI GTCTC 1 cut(s) 307
BsmFI GGGAC 1 cut(s) 205
BsnI GGCC 4 cut(s) 14, 67, 235, 317
Bso31I GGTCTC 1 cut(s) 307
Bsp1286I GDGCHC 2 cut(s) 89, 247
Bsp13I TCCGGA 1 cut(s) 160
Bsp143I GATC 1 cut(s) 122
BspACI CCGC 2 cut(s) 115, 314
BspANI GGCC 4 cut(s) 14, 67, 235, 317
BspEI TCCGGA 1 cut(s) 160
BspLI GGNNCC 2 cut(s) 135, 246
BspPI GGATC 1 cut(s) 117
BspTNI GGTCTC 1 cut(s) 307
BsrBI CCGCTC 1 cut(s) 117
BsrFI RCCGGY 2 cut(s) 10, 14
BsrI ACTGG 1 cut(s) 530
BssAI RCCGGY 2 cut(s) 10, 14
BssECI CCNNGG 1 cut(s) 297
BssMI GATC 1 cut(s) 122
Bst2UI CCWGG 1 cut(s) 299
Bst6I CTCTTC 1 cut(s) 191
BstDEI CTNAG 2 cut(s) 463, 506
BstF5I GGATG 3 cut(s) 267, 444, 448
BstKTI GATC 1 cut(s) 125
BstMAI GTCTC 1 cut(s) 307
BstMBI GATC 1 cut(s) 122
BstMCI CGRYCG 1 cut(s) 15
BstNI CCWGG 1 cut(s) 299
BstSCI CCNGG 3 cut(s) 130, 136, 297
BstX2I RGATCY 1 cut(s) 122
BstYI RGATCY 1 cut(s) 122
BstZI CGGCCG 1 cut(s) 12
BsuRI GGCC 4 cut(s) 14, 67, 235, 317
BtgZI GCGATG 1 cut(s) 6
BtsCI GGATG 3 cut(s) 267, 444, 448
Cfr10I RCCGGY 2 cut(s) 10, 14
Cfr13I GGNCC 3 cut(s) 17, 134, 233
Csp6I GTAC 1 cut(s) 348
CviAII CATG 1 cut(s) 480
CviQI GTAC 1 cut(s) 348
DdeI CTNAG 2 cut(s) 463, 506
DpnI GATC 1 cut(s) 124
DpnII GATC 1 cut(s) 122
DraI TTTAAA 1 cut(s) 279
EaeI YGGCCR 2 cut(s) 12, 315
EagI CGGCCG 1 cut(s) 12
Eam1104I CTCTTC 1 cut(s) 191
EarI CTCTTC 1 cut(s) 191
Ecl136II GAGCTC 1 cut(s) 87
EclXI CGGCCG 1 cut(s) 12
Eco24I GRGCYC 2 cut(s) 89, 247
Eco31I GGTCTC 1 cut(s) 307
Eco32I GATATC 1 cut(s) 393
Eco47I GGWCC 2 cut(s) 17, 134
Eco52I CGGCCG 1 cut(s) 12
Eco53kI GAGCTC 1 cut(s) 87
Eco57I CTGAAG 1 cut(s) 475
EcoICRI GAGCTC 1 cut(s) 87
EcoRII CCWGG 1 cut(s) 297
EcoRV GATATC 1 cut(s) 393
EcoT38I GRGCYC 2 cut(s) 89, 247
FaeI CATG 1 cut(s) 483
FaiI YATR 6 cut(s) 188, 368, 409, 481, 487, 489
FaqI GGGAC 1 cut(s) 205
FatI CATG 1 cut(s) 479
Fnu4HI GCNGC 1 cut(s) 315
FokI GGATG 3 cut(s) 274, 431, 435
FriOI GRGCYC 2 cut(s) 89, 247
Fsp4HI GCNGC 1 cut(s) 315
FspBI CTAG 1 cut(s) 403
GluI GCNGC 1 cut(s) 315
GsaI CCCAGC 1 cut(s) 361
GsuI CTGGAG 1 cut(s) 103
HaeIII GGCC 4 cut(s) 14, 67, 235, 317
HapII CCGG 6 cut(s) 11, 15, 131, 137, 161, 268
Hin1II CATG 1 cut(s) 483
HindIII AAGCTT 1 cut(s) 457
HinfI GANTC 3 cut(s) 60, 157, 183
HpaII CCGG 6 cut(s) 11, 15, 131, 137, 161, 268
HphI GGTGA 1 cut(s) 295
Hpy188I TCNGA 2 cut(s) 127, 249
Hpy188III TCNNGA 5 cut(s) 120, 161, 180, 403, 430
Hpy99I CGWCG 1 cut(s) 147
HpyAV CCTTC 2 cut(s) 249, 436
HpyCH4IV ACGT 1 cut(s) 167
HpyCH4V TGCA 1 cut(s) 502
HpyF3I CTNAG 2 cut(s) 463, 506
HpySE526I ACGT 1 cut(s) 167
Hsp92II CATG 1 cut(s) 483
Kpn2I TCCGGA 1 cut(s) 160
Kzo9I GATC 1 cut(s) 122
LmnI GCTCC 4 cut(s) 92, 106, 122, 250
MaeI CTAG 1 cut(s) 403
MaeII ACGT 1 cut(s) 167
MaeIII GTNAC 1 cut(s) 270
MalI GATC 1 cut(s) 124
MbiI CCGCTC 1 cut(s) 117
MboI GATC 1 cut(s) 122
MboII GAAGA 3 cut(s) 208, 219, 298
MflI RGATCY 1 cut(s) 122
MhlI GDGCHC 2 cut(s) 89, 247
MluCI AATT 3 cut(s) 216, 329, 380
MmeI TCCRAC 1 cut(s) 491
MnlI CCTC 4 cut(s) 44, 234, 378, 383
MroI TCCGGA 1 cut(s) 160
MroXI GAANNNNTTC 1 cut(s) 368
MseI TTAA 2 cut(s) 278, 437
MspI CCGG 6 cut(s) 11, 15, 131, 137, 161, 268
MspR9I CCNGG 3 cut(s) 132, 138, 299
MvaI CCWGG 1 cut(s) 299
NciI CCSGG 2 cut(s) 132, 138
NdeII GATC 1 cut(s) 122
NlaIII CATG 1 cut(s) 483
NlaIV GGNNCC 2 cut(s) 135, 246
PdmI GAANNNNTTC 1 cut(s) 368
PfeI GAWTC 3 cut(s) 60, 157, 183
PkrI GCNGC 1 cut(s) 316
Psp124BI GAGCTC 1 cut(s) 89
Psp6I CCWGG 1 cut(s) 297
PspFI CCCAGC 1 cut(s) 357
PspGI CCWGG 1 cut(s) 297
PspN4I GGNNCC 2 cut(s) 135, 246
PspPI GGNCC 3 cut(s) 17, 134, 233
PsuI RGATCY 1 cut(s) 122
RsaI GTAC 1 cut(s) 349
RsaNI GTAC 1 cut(s) 348
SacI GAGCTC 1 cut(s) 89
SaqAI TTAA 2 cut(s) 278, 437
SatI GCNGC 1 cut(s) 315
Sau3AI GATC 1 cut(s) 122
Sau96I GGNCC 3 cut(s) 17, 134, 233
ScrFI CCNGG 3 cut(s) 132, 138, 299
SduI GDGCHC 2 cut(s) 89, 247
SinI GGWCC 2 cut(s) 17, 134
Sse9I AATT 3 cut(s) 216, 329, 380
SsiI CCGC 2 cut(s) 115, 314
SspMI CTAG 1 cut(s) 403
SstI GAGCTC 1 cut(s) 89
StyD4I CCNGG 3 cut(s) 130, 136, 297
TaiI ACGT 1 cut(s) 170
TasI AATT 3 cut(s) 216, 329, 380
TauI GCSGC 1 cut(s) 317
TfiI GAWTC 3 cut(s) 60, 157, 183
Tru1I TTAA 2 cut(s) 278, 437
Tru9I TTAA 2 cut(s) 278, 437
TspDTI ATGAA 2 cut(s) 175, 433
VpaK11BI GGWCC 2 cut(s) 17, 134
XapI RAATTY 1 cut(s) 216
XbaI TCTAGA 1 cut(s) 402
XcmI CCANNNNNNNNNTGG 1 cut(s) 384
XmnI GAANNNNTTC 1 cut(s) 368
XspI CTAG 1 cut(s) 403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.