Rmu_ssc0000112.1_g000040

Embryo-specific protein 3, (ATS3)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000112.1
OG0017364
Physical Location & Seq
Reverse (-)
192478 .. 193507
1030 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 693 bp
atgccaaagcttccaatgaaggcaataagcattttgagtatttcttcactagtcttcttcatttctctgccaaccaatgcaatgcatcctatcgaccatggcttccaaggagccaaaccaaactgcacctactccattgagattgagacaacctgtgcacaatctgccgaaaccacagaccatgtcagcgtcagattcagcgactccaagggtaatctgatcatagtgaagcatctgaacaaacctaagctcttgtatgctccgaaaggtggttcaaaacgtggagggtatggcgggtttggaagatgtgccatagacgtgtttgaggccagtggaccatgcatgagctcaagggtgtgctctctgtacctgaagaaagtcggatcagatgactggcgacctggctgggtgaaggtgctacatcgacaagatggtggccatgaagtaccagtttcttatgtgttctattttaggacatttgttccagaaaacgtttggaaaaccgtacctcttgttctcgtaggcgacactgagcggattaagcgtggccttggcggcggcggcggcggcggcggaggaggatttcattccggatcggcggagatatcggacttttcagttggcgactacaaagatcttcgtctcctccttcttcttcttcttcttcttcgccttgattttctcggcgactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ATS3

Protein Analysis

230

Amino Acids

24.95

Weight (kDa)

8.93

Isoelectric Point (pI)

45.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATS3 PF06232 38 - 167 6.1e-32 Embryo-specific protein 3, (ATS3)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017364)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g20661
malus_domestica MD07G1183300.v1.1
prunus_persica Prupe.2G222000_v2.0.a1
pyrus_communis pycom07g17590
rosa_chinensis RchiOBHm_Chr1g0364691
rosa_laevigata RLG00000027466
rosa_multiflora Rmu_ssc0000112.1_g000040
rosa_roxburghii Rroxscaffold_4G00291740
rosa_rugosa Rorug01G0318200
rosa_samantha Rh1AG326900 Rh1BG288000 Rh1DG319800
rosa_wichuraiana Rw1G028960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 535
AccIII TCCGGA 1 cut(s) 590
AclI AACGTT 1 cut(s) 492
AclWI GGATC 2 cut(s) 391, 601
AcoI YGGCCR 1 cut(s) 436
AcuI CTGAAG 1 cut(s) 392
AfaI GTAC 3 cut(s) 368, 447, 507
AfiI CCNNNNNNNGG 1 cut(s) 269
AflIII ACRYGT 1 cut(s) 318
AgsI TTSAA 1 cut(s) 276
AhlI ACTAGT 1 cut(s) 49
AjiI CACGTC 1 cut(s) 319
AjnI CCWGG 1 cut(s) 400
AluBI AGCT 3 cut(s) 10, 250, 348
AluI AGCT 3 cut(s) 10, 250, 348
Alw21I GWGCWC 3 cut(s) 160, 350, 362
Alw26I GTCTC 2 cut(s) 140, 647
Alw44I GTGCAC 1 cut(s) 156
AlwI GGATC 2 cut(s) 391, 601
Aor13HI TCCGGA 1 cut(s) 590
AoxI GGCC 3 cut(s) 327, 436, 547
ApaLI GTGCAC 1 cut(s) 156
AspS9I GGNCC 1 cut(s) 335
AsuHPI GGTGA 1 cut(s) 421
AvaII GGWCC 1 cut(s) 335
BaeGI GKGCMC 1 cut(s) 160
BalI TGGCCA 1 cut(s) 438
BanII GRGCYC 1 cut(s) 350
BbsI GAAGAC 1 cut(s) 46
Bbv12I GWGCWC 3 cut(s) 160, 350, 362
BccI CCATC 1 cut(s) 425
BciT130I CCWGG 1 cut(s) 402
BclI TGATCA 1 cut(s) 219
BcoDI GTCTC 2 cut(s) 140, 647
BcuI ACTAGT 1 cut(s) 49
BfaI CTAG 1 cut(s) 50
BglI GCCNNNNNGGC 1 cut(s) 555
BglII AGATCT 1 cut(s) 634
BisI GCNGC 6 cut(s) 556, 559, 562, 565, 568, 571
BlsI GCNGC 6 cut(s) 557, 560, 563, 566, 569, 572
Bme1390I CCNGG 1 cut(s) 402
Bme18I GGWCC 1 cut(s) 335
BmgBI CACGTC 1 cut(s) 319
BmgT120I GGNCC 1 cut(s) 335
BmiI GGNNCC 1 cut(s) 112
BmrFI CCNGG 1 cut(s) 402
BmsI GCATC 2 cut(s) 94, 241
BpiI GAAGAC 1 cut(s) 46
Bpu10I CCTNAGC 1 cut(s) 246
BpuEI CTTGAG 1 cut(s) 334
BsaJI CCNNGG 4 cut(s) 97, 106, 207, 550
BsaWI WCCGGW 1 cut(s) 590
Bsc4I CCNNNNNNNGG 1 cut(s) 269
Bse1I ACTGG 3 cut(s) 330, 398, 449
Bse3DI GCAATG 1 cut(s) 87
BseAI TCCGGA 1 cut(s) 590
BseBI CCWGG 1 cut(s) 402
BseDI CCNNGG 4 cut(s) 97, 106, 207, 550
BseGI GGATG 1 cut(s) 85
BseLI CCNNNNNNNGG 1 cut(s) 269
BseMI GCAATG 1 cut(s) 87
BseMII CTCAG 1 cut(s) 522
BseNI ACTGG 3 cut(s) 330, 398, 449
BseRI GAGGAG 2 cut(s) 591, 635
BseSI GKGCMC 1 cut(s) 160
BseYI CCCAGC 1 cut(s) 405
BsgI GTGCAG 1 cut(s) 109
BshFI GGCC 3 cut(s) 329, 438, 549
BsiHKAI GWGCWC 3 cut(s) 160, 350, 362
BsiSI CCGG 1 cut(s) 591
BslI CCNNNNNNNGG 1 cut(s) 269
BsmAI GTCTC 2 cut(s) 140, 647
BsmBI CGTCTC 1 cut(s) 647
BsnI GGCC 3 cut(s) 329, 438, 549
Bsp1286I GDGCHC 3 cut(s) 160, 350, 362
Bsp13I TCCGGA 1 cut(s) 590
Bsp143I GATC 4 cut(s) 219, 383, 593, 634
Bsp19I CCATGG 1 cut(s) 97
BspANI GGCC 3 cut(s) 329, 438, 549
BspCNI CTCAG 1 cut(s) 523
BspEI TCCGGA 1 cut(s) 590
BspLI GGNNCC 1 cut(s) 112
BspPI GGATC 2 cut(s) 391, 601
BsrBI CCGCTC 1 cut(s) 535
BsrDI GCAATG 1 cut(s) 87
BsrI ACTGG 3 cut(s) 330, 398, 449
BssECI CCNNGG 4 cut(s) 97, 106, 207, 550
BssMI GATC 4 cut(s) 219, 383, 593, 634
BssT1I CCWWGG 4 cut(s) 97, 106, 207, 550
Bst2UI CCWGG 1 cut(s) 402
Bst4CI ACNGT 1 cut(s) 505
BstAPI GCANNNNNTGC 1 cut(s) 164
BstDEI CTNAG 2 cut(s) 246, 531
BstDSI CCRYGG 1 cut(s) 97
BstF5I GGATG 1 cut(s) 85
BstKTI GATC 4 cut(s) 222, 386, 596, 637
BstMAI GTCTC 2 cut(s) 140, 647
BstMBI GATC 4 cut(s) 219, 383, 593, 634
BstMWI GCNNNNNNNGC 7 cut(s) 164, 541, 555, 561, 564, 567, 570
BstNI CCWGG 1 cut(s) 402
BstSCI CCNGG 1 cut(s) 400
BstSLI GKGCMC 1 cut(s) 160
BstV2I GAAGAC 1 cut(s) 46
BstX2I RGATCY 1 cut(s) 634
BstYI RGATCY 1 cut(s) 634
BsuRI GGCC 3 cut(s) 329, 438, 549
BtgI CCRYGG 1 cut(s) 97
BtrI CACGTC 1 cut(s) 319
BtsCI GGATG 1 cut(s) 85
BtsIMutI CAGTG 2 cut(s) 337, 528
Cfr13I GGNCC 1 cut(s) 335
CseI GACGC 1 cut(s) 178
Csp6I GTAC 3 cut(s) 367, 446, 506
CviAII CATG 5 cut(s) 98, 182, 339, 343, 440
CviJI RGCY 9 cut(s) 10, 102, 113, 250, 329, 348, 405, 438, 549
CviKI_1 RGCY 9 cut(s) 10, 102, 113, 250, 329, 348, 405, 438, 549
CviQI GTAC 3 cut(s) 367, 446, 506
DdeI CTNAG 2 cut(s) 246, 531
DpnI GATC 4 cut(s) 221, 385, 595, 636
DpnII GATC 4 cut(s) 219, 383, 593, 634
EaeI YGGCCR 1 cut(s) 436
EciI GGCGGA 2 cut(s) 588, 614
Ecl136II GAGCTC 1 cut(s) 348
Eco130I CCWWGG 4 cut(s) 97, 106, 207, 550
Eco24I GRGCYC 1 cut(s) 350
Eco32I GATATC 1 cut(s) 606
Eco47I GGWCC 1 cut(s) 335
Eco53kI GAGCTC 1 cut(s) 348
Eco57I CTGAAG 1 cut(s) 392
EcoICRI GAGCTC 1 cut(s) 348
EcoRII CCWGG 1 cut(s) 400
EcoRV GATATC 1 cut(s) 606
EcoT14I CCWWGG 4 cut(s) 97, 106, 207, 550
EcoT22I ATGCAT 2 cut(s) 87, 344
EcoT38I GRGCYC 1 cut(s) 350
ErhI CCWWGG 4 cut(s) 97, 106, 207, 550
Esp3I CGTCTC 1 cut(s) 647
FaeI CATG 5 cut(s) 101, 185, 342, 346, 443
FatI CATG 5 cut(s) 97, 181, 338, 342, 439
FauI CCCGC 1 cut(s) 287
FbaI TGATCA 1 cut(s) 219
Fnu4HI GCNGC 6 cut(s) 556, 559, 562, 565, 568, 571
FokI GGATG 1 cut(s) 72
FriOI GRGCYC 1 cut(s) 350
Fsp4HI GCNGC 6 cut(s) 556, 559, 562, 565, 568, 571
FspBI CTAG 1 cut(s) 50
GluI GCNGC 6 cut(s) 556, 559, 562, 565, 568, 571
GsaI CCCAGC 1 cut(s) 409
HaeIII GGCC 3 cut(s) 329, 438, 549
HapII CCGG 1 cut(s) 591
HgaI GACGC 1 cut(s) 178
Hin1II CATG 5 cut(s) 101, 185, 342, 346, 443
HindIII AAGCTT 1 cut(s) 8
HinfI GANTC 2 cut(s) 195, 203
HpaII CCGG 1 cut(s) 591
HphI GGTGA 1 cut(s) 421
Hpy166II GTNNAC 2 cut(s) 158, 335
Hpy188I TCNGA 7 cut(s) 194, 219, 237, 264, 383, 388, 610
Hpy188III TCNNGA 2 cut(s) 485, 591
Hpy8I GTNNAC 2 cut(s) 158, 335
HpyAV CCTTC 3 cut(s) 13, 406, 659
HpyCH4III ACNGT 1 cut(s) 505
HpyCH4IV ACGT 3 cut(s) 280, 318, 492
HpyCH4V TGCA 5 cut(s) 80, 85, 126, 158, 342
HpyF10VI GCNNNNNNNGC 7 cut(s) 164, 541, 555, 561, 564, 567, 570
HpyF3I CTNAG 2 cut(s) 246, 531
HpySE526I ACGT 3 cut(s) 280, 318, 492
Hsp92II CATG 5 cut(s) 101, 185, 342, 346, 443
Kpn2I TCCGGA 1 cut(s) 590
Ksp22I TGATCA 1 cut(s) 219
Kzo9I GATC 4 cut(s) 219, 383, 593, 634
LmnI GCTCC 2 cut(s) 110, 265
LweI GCATC 2 cut(s) 94, 241
MaeI CTAG 1 cut(s) 50
MaeII ACGT 3 cut(s) 280, 318, 492
MalI GATC 4 cut(s) 221, 385, 595, 636
MbiI CCGCTC 1 cut(s) 535
MboI GATC 4 cut(s) 219, 383, 593, 634
MflI RGATCY 1 cut(s) 634
MhlI GDGCHC 3 cut(s) 160, 350, 362
MlsI TGGCCA 1 cut(s) 438
MluNI TGGCCA 1 cut(s) 438
MlyI GAGTC 1 cut(s) 197
MmeI TCCRAC 1 cut(s) 361
MnlI CCTC 6 cut(s) 278, 319, 519, 569, 572, 656
Mox20I TGGCCA 1 cut(s) 438
Mph1103I ATGCAT 2 cut(s) 87, 344
MroI TCCGGA 1 cut(s) 590
MscI TGGCCA 1 cut(s) 438
MseI TTAA 1 cut(s) 540
MslI CAYNNNNRTG 1 cut(s) 317
Msp20I TGGCCA 1 cut(s) 438
MspI CCGG 1 cut(s) 591
MspR9I CCNGG 1 cut(s) 402
MvaI CCWGG 1 cut(s) 402
MwoI GCNNNNNNNGC 7 cut(s) 164, 541, 555, 561, 564, 567, 570
NcoI CCATGG 1 cut(s) 97
NdeII GATC 4 cut(s) 219, 383, 593, 634
NlaIII CATG 5 cut(s) 101, 185, 342, 346, 443
NlaIV GGNNCC 1 cut(s) 112
NmeAIII GCCGAG 1 cut(s) 663
NsiI ATGCAT 2 cut(s) 87, 344
PfeI GAWTC 1 cut(s) 195
PflFI GACNNNGTC 1 cut(s) 182
PkrI GCNGC 6 cut(s) 557, 560, 563, 566, 569, 572
PleI GAGTC 1 cut(s) 197
PpsI GAGTC 1 cut(s) 197
Psp124BI GAGCTC 1 cut(s) 350
Psp1406I AACGTT 1 cut(s) 492
Psp6I CCWGG 1 cut(s) 400
PspFI CCCAGC 1 cut(s) 405
PspGI CCWGG 1 cut(s) 400
PspN4I GGNNCC 1 cut(s) 112
PspPI GGNCC 1 cut(s) 335
PsrI GAACNNNNNNTAC 2 cut(s) 498, 530
PsuI RGATCY 1 cut(s) 634
PsyI GACNNNGTC 1 cut(s) 182
RsaI GTAC 3 cut(s) 368, 447, 507
RsaNI GTAC 3 cut(s) 367, 446, 506
RseI CAYNNNNRTG 1 cut(s) 317
SacI GAGCTC 1 cut(s) 350
SaqAI TTAA 1 cut(s) 540
SatI GCNGC 6 cut(s) 556, 559, 562, 565, 568, 571
Sau3AI GATC 4 cut(s) 219, 383, 593, 634
Sau96I GGNCC 1 cut(s) 335
SchI GAGTC 1 cut(s) 197
ScrFI CCNGG 1 cut(s) 402
SduI GDGCHC 3 cut(s) 160, 350, 362
SfaNI GCATC 2 cut(s) 94, 241
SinI GGWCC 1 cut(s) 335
SmiMI CAYNNNNRTG 1 cut(s) 317
SmlI CTYRAG 1 cut(s) 349
SmoI CTYRAG 1 cut(s) 349
SpeI ACTAGT 1 cut(s) 49
SspMI CTAG 1 cut(s) 50
SstI GAGCTC 1 cut(s) 350
StyD4I CCNGG 1 cut(s) 400
StyI CCWWGG 4 cut(s) 97, 106, 207, 550
TaaI ACNGT 1 cut(s) 505
TaiI ACGT 3 cut(s) 283, 321, 495
TaqI TCGA 2 cut(s) 93, 424
TauI GCSGC 6 cut(s) 558, 561, 564, 567, 570, 573
TfiI GAWTC 1 cut(s) 195
Tru1I TTAA 1 cut(s) 540
Tru9I TTAA 1 cut(s) 540
TscAI CASTG 2 cut(s) 337, 535
TspDTI ATGAA 4 cut(s) 32, 49, 456, 575
TspRI CASTG 2 cut(s) 337, 535
Tth111I GACNNNGTC 1 cut(s) 182
VneI GTGCAC 1 cut(s) 156
VpaK11BI GGWCC 1 cut(s) 335
XcmI CCANNNNNNNNNTGG 1 cut(s) 492
XspI CTAG 1 cut(s) 50
Zsp2I ATGCAT 2 cut(s) 87, 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.