Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000168.1

Orthogroup ID

OG0006461

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 11209

Gene Structure 11209 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000168.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4763 bp

atgggttttaaagccctggattggtattgtcgccctgtggccaatggggtctgggcaaaagctgtgctgaatgcctttggtgcatacactccctgcgcggttgagtctatagttgtcaccgtttctcagttggtacttctggctctgtgcatctatcggatatggaggaccaagagggacttcaaagccaaaaggttctgtttgaagtccaaactgtacaactatatgctggccttattggctggttactgtactgccgagcctctgtatagattgatcatgggaatttcagtgatgaatttagatggtcagtttggccttgcgccatttgaggtggtttctctgatcttacagtctctttcttggtgctctatgctggtcatgattggtgtggaaaccaagatctatatctgtgagtttcgatggtttgtaagatttggagtaatttatactatagtaggggatgctgtggtgttcaatctcattcttacagtgaaggacttctacagcagatctgtattttatttgtacatcagtgaagttgttgctcaggttttgtttggaattcttttggctgtgtatgttccaaatttggttccatatcctggttacactccaatccaaactgaatcaattgatgatgctgcatatgaagaacttcctggaggagagcatatatgtcctgagaggcaggccaacatattgtcaagagtaatattttcatggatgaatccgcttatgaagctaggctatcaaagacccctcacggagaaagatatttggaaattggatacttgggaacgaactgaaacactgaacaataagtttcaaaaatgttgggctgaggaaatacgaaagcctaaaccatggcttttaagagcattgaactctagccttgggggaaggttttggtggggaggcttttggaagattggcaatgatctttcccagtttacggggccacttattttgaatcagctcttacagtctatgcaacgaggggatccagcatggattggttacatctatgccttctcaatatttcttggagtgagcgctggtgtgctatgtgaagctcagtattttcaaaatgttatgcgtgttggttaccgactacggtcaacattggttgctgctgtatttcggaaatctttaaggcttactcatgaagctcgaaagaagtttccatccggaaagataaccaacctgatgacaactgatgctgaagcacttcagcaagtaacccagtctcttcacactttgtggtcagcaccatttcgtatcacgatctgcatggttcttctttaccaagaattgggtgttgcttcactacttggtgcactcatgttagttcttatgttccccctacagactcttgttataagcaaaatgcagaaattgtctaaggaggggttgcaacgtacagacaagagaattggcctaatgaatgaaattttggctgcaatggacactgtgaaatgttatgcatgggagagtagttttcaatccaaggtacaaagtgtccgaactgaagaattgtactggtttcggaaagcatctctactgggagcgtgtaatgcatttatactaaatagcatcccagttgtggtcactgtgatttcctttggattgttcacttttcttgggggaaatctcacacctgcaagggcgtttacatcactgtctctatttgctgtgcttcgatttcccctattcatgcttcctaatataataactcaggcggttaatgctaacgtatctgtaaagcgcctggaggaattacttttagctgaagagcgagttcttctgccaaatcctcctcttgatccaggactgccggccatctcaattaagaatggattcttttcttgggattcaaaggcagagaagcccacgttgacaaatatcaatttggatattcctgttgggagcttggtcgcagttgttggcagcactggtgaagggaagacatcacttatatctgcaatgctaggggagcttccttctgtagcaaacacgagtgttgtaatgagaggaatggttgcttatgttccacaagtttcatggatttttaacgcaaccgtacgtgacaacattttatttggatcgttctttgagtcttcaagatatcagaaggcaattgatgtgactgcattgcagcatgaccttgacttattgcctggtggtgatctgactgagattggtgaaagaggagtgaatattagtggtggacagaagcaaagagtctctatggctagggctgtctactccaattctgatgtatatgtttttgatgatcccttgagtgcccttgatgctcatgtggctcgacaggtttttgataaatgcatcaagggagagttaagagggaaaaccagagtccttgttaccaatcagctacattttctttcgcaagttgatagaatcatactagttcatgatggaatggtgaaagaggagggaacatttgaggagctttccaacaatggcgtgatgttccaaaggctaatggaaaatgcgggaaagatggaagagtatggggaagagaaagaagatgatgaaactgttgatcagaatggcgaaacaattgaacataatccctctttgaaacctattgtcaacggggttgtccatgatatgtcaaaaactgcaagccatgcaagtaaacaaaaagaaggaaaatctgttcttattaaacaagaagaaagggaaacaggagttgtcaacttgaaggtgttggcgaggtataagaatgcattaggaggcttgtgggtggttctcatactctttacatgctatatttcaactgaggttctacgagtttcaagtagcacgtggttgagccattggactaatcaaggcataacagggaaatatgaccctagtttctacaatctgatatacgcacttctatcttttggtcaggttatggtgacactggcaaactctttttggttgattatttctagtctttatgctgcgaggaggttgcatgatgccatgcttgggtccatattaagagctcctatggtctttttccagaccaatccccttggcaggatcattaacagatttgcaaaggatcttggagatattgatcggagtgtggctctatttgcaaacatgtttcttggtcaagtttctcagctcttttctactttcatcttaatagggatcgtgagcactatgtccttgtgggccattctgcctcttttggttttgttttatgcagcctatctatactatcagagcatggcccgcgaggtgaagcgcttggactccatcagcagatccccagtttatgcccaatttggagaagcattgaatggtatatcatcgattcgtgcatataaggcttatgatcggatggcagagattaatggaaagtctgtggacaacaatatcagattcacgctggtgaatataagtgcaaatcggtggcttgcaatccgtttggaagcattgggaggtctcatgatatggtttacagctacctttgctgttatgcagaatggaagggcagagaaccaggaggagtttgcatccaccatgggtctccttcttagttatgctcttaatattacaagtctaatgactggtgtactgagacttgcaagtctggctgagaatagcttaaatgctgttgagcgggttggcacatatatagagttgccttcagaagctcctgctgtaattgagagcaaccgcccccctccaggatggccttcatctggatccattaagtttgaagatgttgttctgcgttatagacctgaacttcctccagttttgcatgagttgtctttcacaatttctccaagcgacaaggtcggaatagttggaaggactggggcagggaagtccagcatgctaaatgctttatttcgaattgttgaattggagagaggaagaattttgattgatggttgtgatattggtaagtttggactcgaagatctacggaaagttcttggtattattccacaggcacccgttcttttttcaggaactgtgagatttaatctcgatccatttcaagaacataatgatgctgacctatgggaggctttagagagggcacatttgaaggatgccatcaggaggaattctttgggtttagatgccgaggtctcggagtcaggagataatttcagtgttggacagcggcaactattgagtcttgctcgagcactcttgcgaagatcaaaaatacttgttcttgatgaagcaactgcagctgttgatgtcagaactgatgctcttattcagaaaactattcgtgaagaatttaaatcatgtacaatgctcattattgctcatcgtctaaataccattattgactgtgatcgaatccttctgcttgataatggccgggttcgagaatatgatactccagagcacctgctgtcaaatgaaagaagcgctttctctaaaatggtgcagagcacaggcgcagcaaatgcccaatatttacgaagcttggtccttggggagggaggagaaaacagaagagaggacaacagccaactagatggacagaggagatggctggcctcttctcgctgggctgcagctgcccagtttgccgttgctgttagccttacttcatcccagaatgaccttcaaagattggagtttgaagaccaggacggtatcctctataagacgaaggatgcggtgataactctccgaggagtcttggaagggaagcatgacaaacttattgaagagtcacttgatcaataccagatctctagagatgg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0042946 GO:0042947 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098588 GO:0098805 GO:1901264 GO:1901505 GO:1901656 GO:1902417 GO:1902418

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04071 ko04976 ko04977 ko05206 map01523 map01524 map02010 map04071 map04976 map04977 map05206

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

1588

Amino Acids

177.79

Weight (kDa)

8.07

Isoelectric Point (pI)

40.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006461)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30400 AT1G30400 AT2G34660 AT2G34660 AT2G34660
fragaria_vesca	FvH4_2g14980 FvH4_2g14980 FvH4_2g14980
malus_domestica	MD05G1275500.v1.1
prunus_persica	Prupe.4G088500_v2.0.a1 Prupe.4G088500_v2.0.a1 Prupe.4G088500_v2.0.a1 Prupe.4G088500_v2.0.a1 Prupe.4G088500_v2.0.a1
pyrus_communis	pycom05g25670 pycom10g21060
rosa_chinensis	RchiOBHm_Chr5g0015421
rosa_laevigata	RLG00000032198
rosa_multiflora	Rmu_ssc0000168.1_g000001
rosa_roxburghii	Rroxscaffold_1G00061060
rosa_rugosa	Rorug05G0027300
rosa_samantha	Rh5AG120900 Rh5BG119700 Rh5CG130500 Rh5DG118800
rosa_wichuraiana	Rw5G010440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1382
AarI	CACCTGC	2 cut(s)	1669, 4410
AasI	GACNNNNNNGTC	1 cut(s)	3615
Acc36I	ACCTGC	2 cut(s)	1669, 4410
AccB1I	GGYRCC	1 cut(s)	3988
AccB7I	CCANNNNNTGG	2 cut(s)	605, 1315
AccBSI	CCGCTC	1 cut(s)	3649
AccI	GTMKAC	1 cut(s)	2265
AccII	CGCG	2 cut(s)	98, 3261
AccIII	TCCGGA	1 cut(s)	1190
AciI	CCGC	9 cut(s)	98, 734, 1742, 2519, 3259, 3649, 3706, 4165, 4676
AcoI	YGGCCR	3 cut(s)	39, 1839, 4369
AcsI	RAATTY	8 cut(s)	285, 298, 564, 589, 1452, 3912, 4105, 4286
AcuI	CTGAAG	5 cut(s)	1217, 1245, 1551, 1812, 3660
AcvI	CACGTG	1 cut(s)	2835
AdeI	CACNNNGTG	1 cut(s)	1263
AfeI	AGCGCT	3 cut(s)	1057, 3272, 4423
AflIII	ACRYGT	1 cut(s)	3123
AhlI	ACTAGT	1 cut(s)	2431
AjnI	CCWGG	9 cut(s)	15, 604, 661, 1770, 1828, 2179, 3528, 3715, 4644
AjuI	GAANNNNNNNTTGG	4 cut(s)	164, 196, 1439, 1471
AleI	CACNNNNGTG	1 cut(s)	3416
AloI	GAACNNNNNNTCC	2 cut(s)	2670, 2702
Alw21I	GWGCWC	7 cut(s)	371, 1342, 3025, 3185, 4192, 4401, 4448
Alw26I	GTCTC	8 cut(s)	360, 1254, 1689, 2251, 3476, 3560, 3601, 4135
Alw44I	GTGCAC	1 cut(s)	1338
AlwNI	CAGNNNCTG	1 cut(s)	4010
Ama87I	CYCGRG	1 cut(s)	4185
Aor13HI	TCCGGA	1 cut(s)	1190
Aor51HI	AGCGCT	3 cut(s)	1057, 3272, 4423
ApaLI	GTGCAC	1 cut(s)	1338
ApoI	RAATTY	8 cut(s)	285, 298, 564, 589, 1452, 3912, 4105, 4286
AseI	ATTAAT	1 cut(s)	3378
Asp700I	GAANNNNTTC	4 cut(s)	500, 657, 1230, 1859
AspLEI	GCGC	7 cut(s)	98, 325, 1058, 1770, 3273, 4424, 4454
AspS9I	GGNCC	6 cut(s)	168, 959, 3009, 3198, 3256, 4483
AsuC2I	CCSGG	1 cut(s)	4373
AsuHPI	GGTGA	9 cut(s)	109, 1970, 2198, 2216, 2461, 2944, 3277, 3430, 4690
AsuII	TTCGAA	1 cut(s)	3886
AvaI	CYCGRG	1 cut(s)	4185
AvaII	GGWCC	3 cut(s)	168, 3009, 4483
BaeGI	GKGCMC	3 cut(s)	1342, 2311, 4081
BalI	TGGCCA	1 cut(s)	41
BamHI	GGATCC	2 cut(s)	1003, 3734
BanI	GGYRCC	1 cut(s)	3988
BanII	GRGCYC	1 cut(s)	3025
BarI	GAAGNNNNNNTAC	2 cut(s)	488, 520
BauI	CACGAG	1 cut(s)	2017
BbrPI	CACGTG	1 cut(s)	2835
BbsI	GAAGAC	3 cut(s)	1973, 2112, 4647
Bbv12I	GWGCWC	7 cut(s)	371, 1342, 3025, 3185, 4192, 4401, 4448
BbvCI	CCTCAGC	1 cut(s)	843
BceAI	ACGGC	1 cut(s)	4571
BcgI	CGANNNNNNTGC	2 cut(s)	2971, 3005
BciT130I	CCWGG	9 cut(s)	17, 606, 663, 1772, 1830, 2181, 3530, 3717, 4646
BciVI	GTATCC	2 cut(s)	784, 4664
BclI	TGATCA	3 cut(s)	276, 2569, 4738
BcnI	CCSGG	1 cut(s)	4373
BcoDI	GTCTC	8 cut(s)	360, 1254, 1689, 2251, 3476, 3560, 3601, 4135
BcuI	ACTAGT	1 cut(s)	2431
BfaI	CTAG	9 cut(s)	746, 891, 1991, 2256, 2432, 2883, 2967, 4529, 4755
BfmI	CTRYAG	7 cut(s)	108, 453, 505, 1367, 2007, 4233, 4569
BfoI	RGCGCY	4 cut(s)	1059, 1771, 3274, 4425
BfuAI	ACCTGC	2 cut(s)	1669, 4410
BfuI	GTATCC	2 cut(s)	784, 4664
BglI	GCCNNNNNGGC	1 cut(s)	239
BglII	AGATCT	4 cut(s)	402, 512, 3955, 4749
Bme18I	GGWCC	3 cut(s)	168, 3009, 4483
BmeT110I	CYCGRG	1 cut(s)	4185
BmgT120I	GGNCC	6 cut(s)	168, 959, 3009, 3198, 3256, 4483
BmiI	GGNNCC	6 cut(s)	597, 960, 1005, 3010, 3736, 3990
BmrI	ACTGGG	7 cut(s)	943, 1240, 1574, 1595, 3290, 3858, 4573
BmuI	ACTGGG	7 cut(s)	943, 1240, 1574, 1595, 3290, 3858, 4573
BoxI	GACNNNNGTC	1 cut(s)	1117
BpiI	GAAGAC	3 cut(s)	1973, 2112, 4647
BplI	GAGNNNNNCTC	4 cut(s)	3094, 3126, 4168, 4200
BpmI	CTGGAG	5 cut(s)	684, 1793, 3699, 3768, 4377
Bpu10I	CCTNAGC	2 cut(s)	549, 843
Bpu14I	TTCGAA	1 cut(s)	3886
BpuEI	CTTGAG	1 cut(s)	2323
BpuMI	CCSGG	1 cut(s)	4373
Bsa29I	ATCGAT	1 cut(s)	3338
BsaAI	YACGTR	2 cut(s)	2087, 2835
BsaBI	GATNNNNATC	2 cut(s)	407, 3096
BsaI	GGTCTC	3 cut(s)	3476, 3560, 4135
BsaJI	CCNNGG	9 cut(s)	15, 866, 895, 1509, 3052, 3549, 4125, 4486, 4690
BsaWI	WCCGGW	1 cut(s)	1190
BsaXI	ACNNNNNCTCC	2 cut(s)	3799, 3829
Bse118I	RCCGGY	1 cut(s)	1837
Bse3DI	GCAATG	4 cut(s)	943, 1470, 1992, 2153
Bse8I	GATNNNNATC	2 cut(s)	407, 3096
BseAI	TCCGGA	1 cut(s)	1190
BseBI	CCWGG	9 cut(s)	17, 606, 663, 1772, 1830, 2181, 3530, 3717, 4646
BseCI	ATCGAT	1 cut(s)	3338
BseDI	CCNNGG	9 cut(s)	15, 866, 895, 1509, 3052, 3549, 4125, 4486, 4690
BseJI	GATNNNNATC	2 cut(s)	407, 3096
BseMI	GCAATG	4 cut(s)	943, 1470, 1992, 2153
BseSI	GKGCMC	3 cut(s)	1342, 2311, 4081
BseYI	CCCAGC	1 cut(s)	4563
BsgI	GTGCAG	1 cut(s)	4460
Bsh1236I	CGCG	2 cut(s)	98, 3261
BshNI	GGYRCC	1 cut(s)	3988
BshVI	ATCGAT	1 cut(s)	3338
BsiHKAI	GWGCWC	7 cut(s)	371, 1342, 3025, 3185, 4192, 4401, 4448
BsiHKCI	CYCGRG	1 cut(s)	4185
BsiSI	CCGG	3 cut(s)	1191, 1838, 4372
BsiWI	CGTACG	1 cut(s)	2083
BslFI	GGGAC	1 cut(s)	191
BsmAI	GTCTC	8 cut(s)	360, 1254, 1689, 2251, 3476, 3560, 3601, 4135
BsmFI	GGGAC	1 cut(s)	191
BsmI	GAATGC	2 cut(s)	76, 2758
Bso31I	GGTCTC	3 cut(s)	3476, 3560, 4135
BsoBI	CYCGRG	1 cut(s)	4185
Bsp119I	TTCGAA	1 cut(s)	3886
Bsp1286I	GDGCHC	9 cut(s)	371, 1342, 2311, 3025, 3185, 4081, 4192, 4401, 4448
Bsp13I	TCCGGA	1 cut(s)	1190
Bsp1407I	TGTACA	3 cut(s)	216, 528, 4298
Bsp19I	CCATGG	2 cut(s)	866, 3549
BspACI	CCGC	9 cut(s)	98, 734, 1742, 2519, 3259, 3649, 3706, 4165, 4676
BspDI	ATCGAT	1 cut(s)	3338
BspEI	TCCGGA	1 cut(s)	1190
BspFNI	CGCG	2 cut(s)	98, 3261
BspHI	TCATGA	4 cut(s)	381, 1165, 2437, 3474
BspLI	GGNNCC	6 cut(s)	597, 960, 1005, 3010, 3736, 3990
BspMAI	CTGCAG	2 cut(s)	4237, 4573
BspMI	ACCTGC	2 cut(s)	1669, 4410
BspQI	GCTCTTC	1 cut(s)	1788
BspT104I	TTCGAA	1 cut(s)	3886
BspT107I	GGYRCC	1 cut(s)	3988
BspTNI	GGTCTC	3 cut(s)	3476, 3560, 4135
BsrBI	CCGCTC	1 cut(s)	3649
BsrDI	GCAATG	4 cut(s)	943, 1470, 1992, 2153
BsrFI	RCCGGY	1 cut(s)	1837
BsrGI	TGTACA	3 cut(s)	216, 528, 4298
BssAI	RCCGGY	1 cut(s)	1837
BssECI	CCNNGG	9 cut(s)	15, 866, 895, 1509, 3052, 3549, 4125, 4486, 4690
BssSI	CACGAG	1 cut(s)	2017
BssT1I	CCWWGG	6 cut(s)	866, 895, 1509, 3052, 3549, 4486
Bst2BI	CACGAG	1 cut(s)	2017
Bst2UI	CCWGG	9 cut(s)	17, 606, 663, 1772, 1830, 2181, 3530, 3717, 4646
Bst6I	CTCTTC	7 cut(s)	1257, 1788, 2526, 2538, 4504, 4561, 4722
BstAPI	GCANNNNNTGC	2 cut(s)	2657, 4460
BstAUI	TGTACA	3 cut(s)	216, 528, 4298
BstBAI	YACGTR	2 cut(s)	2087, 2835
BstBI	TTCGAA	1 cut(s)	3886
BstC8I	GCNNGC	8 cut(s)	231, 693, 1839, 2653, 3259, 3444, 3869, 4551
BstDSI	CCRYGG	2 cut(s)	866, 3549
BstEII	GGTNACC	1 cut(s)	1106
BstENI	CCTNNNNNAGG	2 cut(s)	4061, 4490
BstFNI	CGCG	2 cut(s)	98, 3261
BstH2I	RGCGCY	4 cut(s)	1059, 1771, 3274, 4425
BstHHI	GCGC	7 cut(s)	98, 325, 1058, 1770, 3273, 4424, 4454
BstMAI	GTCTC	8 cut(s)	360, 1254, 1689, 2251, 3476, 3560, 3601, 4135
BstNI	CCWGG	9 cut(s)	17, 606, 663, 1772, 1830, 2181, 3530, 3717, 4646
BstNSI	RCATGY	3 cut(s)	2796, 3127, 3871
BstPAI	GACNNNNGTC	1 cut(s)	1117
BstPI	GGTNACC	1 cut(s)	1106
BstSFI	CTRYAG	7 cut(s)	108, 453, 505, 1367, 2007, 4233, 4569
BstSLI	GKGCMC	3 cut(s)	1342, 2311, 4081
BstUI	CGCG	2 cut(s)	98, 3261
BstV2I	GAAGAC	3 cut(s)	1973, 2112, 4647
BstX2I	RGATCY	8 cut(s)	402, 512, 1003, 3082, 3290, 3734, 3955, 4749
BstXI	CCANNNNNNTGG	1 cut(s)	4532
BstYI	RGATCY	8 cut(s)	402, 512, 1003, 3082, 3290, 3734, 3955, 4749
Bsu15I	ATCGAT	1 cut(s)	3338
BsuI	GTATCC	2 cut(s)	784, 4664
BsuTUI	ATCGAT	1 cut(s)	3338
BtgI	CCRYGG	2 cut(s)	866, 3549
BveI	ACCTGC	2 cut(s)	1669, 4410
Cac8I	GCNNGC	8 cut(s)	231, 693, 1839, 2653, 3259, 3444, 3869, 4551
CaiI	CAGNNNCTG	1 cut(s)	4010
CciI	TCATGA	4 cut(s)	381, 1165, 2437, 3474
CfoI	GCGC	7 cut(s)	98, 325, 1058, 1770, 3273, 4424, 4454
Cfr10I	RCCGGY	1 cut(s)	1837
Cfr13I	GGNCC	6 cut(s)	168, 959, 3009, 3198, 3256, 4483
ClaI	ATCGAT	1 cut(s)	3338
CspCI	CAANNNNNGTGG	2 cut(s)	951, 986
DraI	TTTAAA	2 cut(s)	10, 4291
DraIII	CACNNNGTG	1 cut(s)	1263
DrdI	GACNNNNNNGTC	1 cut(s)	3615
DseDI	GACNNNNNNGTC	1 cut(s)	3615
EaeI	YGGCCR	3 cut(s)	39, 1839, 4369
Eam1104I	CTCTTC	7 cut(s)	1257, 1788, 2526, 2538, 4504, 4561, 4722
EarI	CTCTTC	7 cut(s)	1257, 1788, 2526, 2538, 4504, 4561, 4722
Ecl136II	GAGCTC	1 cut(s)	3023
Eco130I	CCWWGG	6 cut(s)	866, 895, 1509, 3052, 3549, 4486
Eco24I	GRGCYC	1 cut(s)	3025
Eco31I	GGTCTC	3 cut(s)	3476, 3560, 4135
Eco32I	GATATC	1 cut(s)	2129
Eco47I	GGWCC	3 cut(s)	168, 3009, 4483
Eco47III	AGCGCT	3 cut(s)	1057, 3272, 4423
Eco53kI	GAGCTC	1 cut(s)	3023
Eco57I	CTGAAG	5 cut(s)	1217, 1245, 1551, 1812, 3660
Eco72I	CACGTG	1 cut(s)	2835
Eco88I	CYCGRG	1 cut(s)	4185
Eco91I	GGTNACC	1 cut(s)	1106
EcoICRI	GAGCTC	1 cut(s)	3023
EcoNI	CCTNNNNNAGG	2 cut(s)	4061, 4490
EcoO65I	GGTNACC	1 cut(s)	1106
EcoRI	GAATTC	2 cut(s)	564, 4105
EcoRII	CCWGG	9 cut(s)	15, 604, 661, 1770, 1828, 2179, 3528, 3715, 4644
EcoRV	GATATC	1 cut(s)	2129
EcoT14I	CCWWGG	6 cut(s)	866, 895, 1509, 3052, 3549, 4486
EcoT22I	ATGCAT	4 cut(s)	1489, 1582, 2351, 2758
EcoT38I	GRGCYC	1 cut(s)	3025
ErhI	CCWWGG	6 cut(s)	866, 895, 1509, 3052, 3549, 4486
FalI	AAGNNNNNCTT	6 cut(s)	164, 196, 4408, 4440, 4719, 4751
FaqI	GGGAC	1 cut(s)	191
FauI	CCCGC	3 cut(s)	2512, 3266, 3642
FauNDI	CATATG	1 cut(s)	649
FbaI	TGATCA	3 cut(s)	276, 2569, 4738
FblI	GTMKAC	1 cut(s)	2265
FriOI	GRGCYC	1 cut(s)	3025
FspBI	CTAG	9 cut(s)	746, 891, 1991, 2256, 2432, 2883, 2967, 4529, 4755
GlaI	GCGC	7 cut(s)	97, 324, 1057, 1769, 3272, 4423, 4453
GsaI	CCCAGC	1 cut(s)	4567
GsuI	CTGGAG	5 cut(s)	684, 1793, 3699, 3768, 4377
HaeII	RGCGCY	4 cut(s)	1059, 1771, 3274, 4425
HapII	CCGG	3 cut(s)	1191, 1838, 4372
HhaI	GCGC	7 cut(s)	98, 325, 1058, 1770, 3273, 4424, 4454
Hin6I	GCGC	7 cut(s)	96, 323, 1056, 1768, 3271, 4422, 4452
HinP1I	GCGC	7 cut(s)	96, 323, 1056, 1768, 3271, 4422, 4452
HincII	GTYRAC	4 cut(s)	1122, 1899, 2620, 2725
HindII	GTYRAC	4 cut(s)	1122, 1899, 2620, 2725
HindIII	AAGCTT	1 cut(s)	4477
HpaII	CCGG	3 cut(s)	1191, 1838, 4372
HphI	GGTGA	9 cut(s)	109, 1970, 2198, 2216, 2461, 2944, 3277, 3430, 4690
HpyCH4IV	ACGT	5 cut(s)	1420, 1755, 1895, 2086, 2834
HpySE526I	ACGT	5 cut(s)	1420, 1755, 1895, 2086, 2834
HspAI	GCGC	7 cut(s)	96, 323, 1056, 1768, 3271, 4422, 4452
Kpn2I	TCCGGA	1 cut(s)	1190
KroI	GCCGGC	1 cut(s)	1837
KroNI	GCCGGC	1 cut(s)	1839
Ksp22I	TGATCA	3 cut(s)	276, 2569, 4738
LguI	GCTCTTC	1 cut(s)	1788
LmnI	GCTCC	6 cut(s)	1568, 1929, 1996, 2473, 3028, 3688
MaeI	CTAG	9 cut(s)	746, 891, 1991, 2256, 2432, 2883, 2967, 4529, 4755
MaeII	ACGT	5 cut(s)	1420, 1755, 1895, 2086, 2834
MbiI	CCGCTC	1 cut(s)	3649
MfeI	CAATTG	3 cut(s)	633, 2139, 2586
MflI	RGATCY	8 cut(s)	402, 512, 1003, 3082, 3290, 3734, 3955, 4749
MhlI	GDGCHC	9 cut(s)	371, 1342, 2311, 3025, 3185, 4081, 4192, 4401, 4448
MlsI	TGGCCA	1 cut(s)	41
MluNI	TGGCCA	1 cut(s)	41
MmeI	TCCRAC	4 cut(s)	2505, 3811, 3820, 4138
Mox20I	TGGCCA	1 cut(s)	41
Mph1103I	ATGCAT	4 cut(s)	1489, 1582, 2351, 2758
MroI	TCCGGA	1 cut(s)	1190
MroNI	GCCGGC	1 cut(s)	1837
MroXI	GAANNNNTTC	4 cut(s)	500, 657, 1230, 1859
MscI	TGGCCA	1 cut(s)	41
MslI	CAYNNNNRTG	2 cut(s)	3416, 4047
Msp20I	TGGCCA	1 cut(s)	41
MspA1I	CMGCKG	3 cut(s)	4165, 4238, 4574
MspI	CCGG	3 cut(s)	1191, 1838, 4372
MunI	CAATTG	3 cut(s)	633, 2139, 2586
Mva1269I	GAATGC	2 cut(s)	76, 2758
MvaI	CCWGG	9 cut(s)	17, 606, 663, 1772, 1830, 2181, 3530, 3717, 4646
MvnI	CGCG	2 cut(s)	98, 3261
NaeI	GCCGGC	1 cut(s)	1839
NciI	CCSGG	1 cut(s)	4373
NcoI	CCATGG	2 cut(s)	866, 3549
NdeI	CATATG	1 cut(s)	649
NgoMIV	GCCGGC	1 cut(s)	1837
NlaIV	GGNNCC	6 cut(s)	597, 960, 1005, 3010, 3736, 3990
NmeAIII	GCCGAG	2 cut(s)	283, 4150
NmuCI	GTSAC	6 cut(s)	115, 1609, 2087, 2146, 2932, 4731
NsiI	ATGCAT	4 cut(s)	1489, 1582, 2351, 2758
NspI	RCATGY	3 cut(s)	2796, 3127, 3871
NspV	TTCGAA	1 cut(s)	3886
OliI	CACNNNNGTG	1 cut(s)	3416
PaeI	GCATGC	1 cut(s)	3871
PaeR7I	CTCGAG	1 cut(s)	4185
PagI	TCATGA	4 cut(s)	381, 1165, 2437, 3474
PaqCI	CACCTGC	2 cut(s)	1669, 4410
PciI	ACATGT	1 cut(s)	3123
PciSI	GCTCTTC	1 cut(s)	1788
PctI	GAATGC	2 cut(s)	76, 2758
PdiI	GCCGGC	1 cut(s)	1839
PdmI	GAANNNNTTC	4 cut(s)	500, 657, 1230, 1859
PfeI	GAWTC	9 cut(s)	629, 730, 973, 1860, 1874, 2424, 3340, 3408, 4350
Pfl23II	CGTACG	1 cut(s)	2083
PflFI	GACNNNGTC	1 cut(s)	3827
PflMI	CCANNNNNTGG	2 cut(s)	605, 1315
PfoI	TCCNGGA	3 cut(s)	661, 1828, 3715
PmaCI	CACGTG	1 cut(s)	2835
PmlI	CACGTG	1 cut(s)	2835
Ppu21I	YACGTR	2 cut(s)	2087, 2835
PscI	ACATGT	1 cut(s)	3123
PshAI	GACNNNNGTC	1 cut(s)	1117
PshBI	ATTAAT	1 cut(s)	3378
PsiI	TTATAA	1 cut(s)	1382
Psp124BI	GAGCTC	1 cut(s)	3025
Psp6I	CCWGG	9 cut(s)	15, 604, 661, 1770, 1828, 2179, 3528, 3715, 4644
PspCI	CACGTG	1 cut(s)	2835
PspEI	GGTNACC	1 cut(s)	1106
PspFI	CCCAGC	1 cut(s)	4563
PspGI	CCWGG	9 cut(s)	15, 604, 661, 1770, 1828, 2179, 3528, 3715, 4644
PspLI	CGTACG	1 cut(s)	2083
PspN4I	GGNNCC	6 cut(s)	597, 960, 1005, 3010, 3736, 3990
PspPI	GGNCC	6 cut(s)	168, 959, 3009, 3198, 3256, 4483
PspXI	VCTCGAGB	1 cut(s)	4185
PstI	CTGCAG	2 cut(s)	4237, 4573
PstNI	CAGNNNCTG	1 cut(s)	4010
PsuI	RGATCY	8 cut(s)	402, 512, 1003, 3082, 3290, 3734, 3955, 4749
PsyI	GACNNNGTC	1 cut(s)	3827
PvuII	CAGCTG	2 cut(s)	4238, 4574
RseI	CAYNNNNRTG	2 cut(s)	3416, 4047
SacI	GAGCTC	1 cut(s)	3025
SapI	GCTCTTC	1 cut(s)	1788
Sau96I	GGNCC	6 cut(s)	168, 959, 3009, 3198, 3256, 4483
SduI	GDGCHC	9 cut(s)	371, 1342, 2311, 3025, 3185, 4081, 4192, 4401, 4448
SfcI	CTRYAG	7 cut(s)	108, 453, 505, 1367, 2007, 4233, 4569
Sfr274I	CTCGAG	1 cut(s)	4185
SfuI	TTCGAA	1 cut(s)	3886
SinI	GGWCC	3 cut(s)	168, 3009, 4483
SlaI	CTCGAG	1 cut(s)	4185
SmiI	ATTTAAAT	1 cut(s)	4291
SmiMI	CAYNNNNRTG	2 cut(s)	3416, 4047
SmlI	CTYRAG	2 cut(s)	2302, 4185
SmoI	CTYRAG	2 cut(s)	2302, 4185
SpeI	ACTAGT	1 cut(s)	2431
SphI	GCATGC	1 cut(s)	3871
SsiI	CCGC	9 cut(s)	98, 734, 1742, 2519, 3259, 3649, 3706, 4165, 4676
SspI	AATATT	5 cut(s)	717, 1041, 2221, 3580, 4469
SspMI	CTAG	9 cut(s)	746, 891, 1991, 2256, 2432, 2883, 2967, 4529, 4755
SstI	GAGCTC	1 cut(s)	3025
StyI	CCWWGG	6 cut(s)	866, 895, 1509, 3052, 3549, 4486
SwaI	ATTTAAAT	1 cut(s)	4291
TaiI	ACGT	5 cut(s)	1423, 1758, 1898, 2089, 2837
TatI	WGTACW	6 cut(s)	216, 251, 528, 1539, 3601, 4298
TauI	GCSGC	1 cut(s)	4168
TfiI	GAWTC	9 cut(s)	629, 730, 973, 1860, 1874, 2424, 3340, 3408, 4350
TseFI	GTSAC	6 cut(s)	115, 1609, 2087, 2146, 2932, 4731
Tsp45I	GTSAC	6 cut(s)	115, 1609, 2087, 2146, 2932, 4731
TspGWI	ACGGA	3 cut(s)	782, 3440, 3976
Tth111I	GACNNNGTC	1 cut(s)	3827
Van91I	CCANNNNNTGG	2 cut(s)	605, 1315
VneI	GTGCAC	1 cut(s)	1338
VpaK11BI	GGWCC	3 cut(s)	168, 3009, 4483
VspI	ATTAAT	1 cut(s)	3378
XagI	CCTNNNNNAGG	2 cut(s)	4061, 4490
XapI	RAATTY	8 cut(s)	285, 298, 564, 589, 1452, 3912, 4105, 4286
XbaI	TCTAGA	1 cut(s)	4754
XceI	RCATGY	3 cut(s)	2796, 3127, 3871
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2061
XhoI	CTCGAG	1 cut(s)	4185
XmiI	GTMKAC	1 cut(s)	2265
XmnI	GAANNNNTTC	4 cut(s)	500, 657, 1230, 1859
XspI	CTAG	9 cut(s)	746, 891, 1991, 2256, 2432, 2883, 2967, 4529, 4755
Zsp2I	ATGCAT	4 cut(s)	1489, 1582, 2351, 2758

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.