Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006461

Physical Location & Seq

Genomic Coordinates Reverse (-)

1752937 .. 1753875

Gene Structure 939 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0027300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGCTTATTGGAGATAATGCAGCTGCCAACACCTACCCATACATTGAGGTCAAGAATCCCACAGCTCGCATTGAACACGAAGCCAGTACCTCCAAAATTGGTGAAGACCAGCTATTTTACTTTCAGCAAAGGGGAATAGACTATGAGAAAGCCATGGCTGCCATGATATCTGGTTTTTGCCAGGCAGTATTCAATGAGCTTCCTGATGAGTTTGGGTCTGAGGTGAATCAACTGATTGGCTTGAAGCTTGAAGGAACAGTGGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0042946 GO:0042947 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098588 GO:0098805 GO:1901264 GO:1901505 GO:1901656 GO:1902417 GO:1902418

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04071 ko04976 ko04977 ko05206 map01523 map01524 map02010 map04071 map04976 map04977 map05206

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

88

Amino Acids

9.72

Weight (kDa)

4.41

Isoelectric Point (pI)

22.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SUFBD_core	PF01458	1 - 59	2.4e-18	SUF system FeS cluster assembly, SufBD core domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0006461)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30400 AT1G30400 AT2G34660 AT2G34660 AT2G34660
fragaria_vesca	FvH4_2g14980 FvH4_2g14980 FvH4_2g14980
malus_domestica	MD05G1275500.v1.1
prunus_persica	Prupe.4G088500_v2.0.a1 Prupe.4G088500_v2.0.a1 Prupe.4G088500_v2.0.a1 Prupe.4G088500_v2.0.a1 Prupe.4G088500_v2.0.a1
pyrus_communis	pycom05g25670 pycom10g21060
rosa_chinensis	RchiOBHm_Chr5g0015421
rosa_laevigata	RLG00000032198
rosa_multiflora	Rmu_ssc0000168.1_g000001
rosa_roxburghii	Rroxscaffold_1G00061060
rosa_rugosa	Rorug05G0027300
rosa_samantha	Rh5AG120900 Rh5BG119700 Rh5CG130500 Rh5DG118800
rosa_wichuraiana	Rw5G010440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	88
AgsI	TTSAA	4 cut(s)	74, 193, 244, 251
AjnI	CCWGG	1 cut(s)	180
AluBI	AGCT	5 cut(s)	23, 65, 112, 199, 247
AluI	AGCT	5 cut(s)	23, 65, 112, 199, 247
ApeKI	GCWGC	3 cut(s)	20, 23, 158
AsuHPI	GGTGA	2 cut(s)	113, 235
BbsI	GAAGAC	1 cut(s)	111
BbvI	GCAGC	3 cut(s)	10, 32, 145
BciT130I	CCWGG	1 cut(s)	182
BisI	GCNGC	3 cut(s)	21, 24, 159
BlsI	GCNGC	3 cut(s)	22, 25, 160
Bme1390I	CCNGG	1 cut(s)	182
BmrFI	CCNGG	1 cut(s)	182
BpiI	GAAGAC	1 cut(s)	111
BsaJI	CCNNGG	1 cut(s)	153
Bse1I	ACTGG	1 cut(s)	84
BseBI	CCWGG	1 cut(s)	182
BseDI	CCNNGG	1 cut(s)	153
BseMII	CTCAG	1 cut(s)	210
BseNI	ACTGG	1 cut(s)	84
BseXI	GCAGC	3 cut(s)	10, 32, 145
Bsp19I	CCATGG	1 cut(s)	153
BspCNI	CTCAG	1 cut(s)	211
BsrI	ACTGG	1 cut(s)	84
BssECI	CCNNGG	1 cut(s)	153
BssT1I	CCWWGG	1 cut(s)	153
Bst2UI	CCWGG	1 cut(s)	182
Bst4CI	ACNGT	1 cut(s)	259
BstC8I	GCNNGC	1 cut(s)	67
BstDEI	CTNAG	1 cut(s)	219
BstDSI	CCRYGG	1 cut(s)	153
BstMWI	GCNNNNNNNGC	1 cut(s)	158
BstNI	CCWGG	1 cut(s)	182
BstSCI	CCNGG	1 cut(s)	180
BstV1I	GCAGC	3 cut(s)	10, 32, 145
BstV2I	GAAGAC	1 cut(s)	111
BtgI	CCRYGG	1 cut(s)	153
BtsIMutI	CAGTG	1 cut(s)	264
Cac8I	GCNNGC	1 cut(s)	67
Csp6I	GTAC	1 cut(s)	87
CviAII	CATG	2 cut(s)	154, 163
CviJI	RGCY	9 cut(s)	23, 65, 83, 112, 152, 158, 199, 240, 247
CviKI_1	RGCY	9 cut(s)	23, 65, 83, 112, 152, 158, 199, 240, 247
CviQI	GTAC	1 cut(s)	87
DdeI	CTNAG	1 cut(s)	219
Eco130I	CCWWGG	1 cut(s)	153
Eco32I	GATATC	1 cut(s)	168
EcoRII	CCWGG	1 cut(s)	180
EcoRV	GATATC	1 cut(s)	168
EcoT14I	CCWWGG	1 cut(s)	153
ErhI	CCWWGG	1 cut(s)	153
FaeI	CATG	2 cut(s)	157, 166
FaiI	YATR	4 cut(s)	40, 144, 155, 164
FatI	CATG	2 cut(s)	153, 162
Fnu4HI	GCNGC	3 cut(s)	21, 24, 159
Fsp4HI	GCNGC	3 cut(s)	21, 24, 159
GluI	GCNGC	3 cut(s)	21, 24, 159
Hin1II	CATG	2 cut(s)	157, 166
HindIII	AAGCTT	1 cut(s)	245
HinfI	GANTC	2 cut(s)	55, 226
HphI	GGTGA	2 cut(s)	113, 235
Hpy188I	TCNGA	1 cut(s)	220
Hpy188III	TCNNGA	2 cut(s)	52, 203
HpyAV	CCTTC	1 cut(s)	245
HpyCH4III	ACNGT	1 cut(s)	259
HpyCH4V	TGCA	1 cut(s)	20
HpyF10VI	GCNNNNNNNGC	1 cut(s)	158
HpyF3I	CTNAG	1 cut(s)	219
Hsp92II	CATG	2 cut(s)	157, 166
LpnPI	CCDG	6 cut(s)	97, 122, 156, 167, 194, 216
Lsp1109I	GCAGC	3 cut(s)	10, 32, 145
MboII	GAAGA	1 cut(s)	116
MluCI	AATT	1 cut(s)	96
MnlI	CCTC	3 cut(s)	40, 100, 214
MspA1I	CMGCKG	1 cut(s)	23
MspR9I	CCNGG	1 cut(s)	182
MvaI	CCWGG	1 cut(s)	182
MwoI	GCNNNNNNNGC	1 cut(s)	158
NcoI	CCATGG	1 cut(s)	153
NlaIII	CATG	2 cut(s)	157, 166
PfeI	GAWTC	2 cut(s)	55, 226
PkrI	GCNGC	3 cut(s)	22, 25, 160
Psp6I	CCWGG	1 cut(s)	180
PspGI	CCWGG	1 cut(s)	180
PvuII	CAGCTG	1 cut(s)	23
RsaI	GTAC	1 cut(s)	88
RsaNI	GTAC	1 cut(s)	87
SatI	GCNGC	3 cut(s)	21, 24, 159
ScrFI	CCNGG	1 cut(s)	182
SetI	ASST	9 cut(s)	25, 35, 51, 67, 92, 114, 201, 225, 249
Sse9I	AATT	1 cut(s)	96
StyD4I	CCNGG	1 cut(s)	180
StyI	CCWWGG	1 cut(s)	153
TaaI	ACNGT	1 cut(s)	259
TasI	AATT	1 cut(s)	96
TfiI	GAWTC	2 cut(s)	55, 226
TscAI	CASTG	1 cut(s)	264
TseI	GCWGC	3 cut(s)	20, 23, 158
TspRI	CASTG	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.