Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0006461

Physical Location & Seq

Genomic Coordinates Forward (+)

11255191 .. 11266298

Gene Structure 11108 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG120900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4278 bp

ATGGGTTTTAAAGCCCTGGATTGGTATTGTCGCCCCGTGGCCAATGGGGTCTGGGCAAAAGCTGTGCTGAATGCCTTTGGTGCATACACTCCGTGCGCGGTTGAGTCTATAGTTGTCACCGTTTCTCAGTTGGTACTTCTGGCTCTGTGCATCTATCGGATATGGAGGACCAAGAGGGACTTCAAAGCCAAAAGGTTCTGTTTGAAGTCCAAACTGTACAACTATATGCTGGCCTTATTGGCTGGTTACTGTACTGCTGAGCCTCTGTATAGATTGATCATGGGAATTTCAGTGATGAATTTAGATGGTCAGTTTGGCCTTGCGCCATTTGAGGTGGTTTCTCTGATCTTACAGTCTCTTTCTTGGTGCTCTATGCTGGTCATGATTGGTGTGGAAACCAAGATCTATATCTGTGAGTTTCGATGGTTTGTAAGATTTGGAGTAATTTATACTATAGTAGGGGATGCTGTGGTGTTCAATCTCATTCTTACAGTGAAGGACTTCTACAGCAGATCTGTATTTTATTTGTACATCAGTGAAGTTGTTGCTCAGGTTTTGTTTGGAATTCTTTTGGCTGTGTATGTTCCAAATTTGGTTCCATATCCTGGTTACACTCCAATCCAAACTGAATCAATTGATGATGCTGCATATGAAGAACTTCCTGGAGGAGAGCATATATGTCCTGAGAGGCAGGCCAACATATTGTCAAGAGTAATATTTTCATGGATGAATCCGCTTATGAAGCTAGGCTATCAAAGACCCCTCACGGAGAAAGATATTTGGAAATTGGATACTTGGGAACGAACTGAAACACTGAACAATAAGTTTCAAAAATGTTGGGCTGAGGAAATACGAAAGCCTAAACCATGGCTTTTAAGAGCATTGAACTCTAGCCTTGGGGGAAGGTTTTGGTGGGGAGGCTTTTGGAAGATTGGCAATGATGTTTCCCAGTTTACGGGGCCACTTATTTTGAATCAGCTCTTACAGTCTATGCAACGAGGGGATCCAGCATGGATTGGTTACATCTATGCCTTCTCAATATTTCTTGGAGTGAGCGCTGGTGTGCTATGTGAAGCTCAGTATTTTCAAAATGTTATGCGTGTTGGTTACCGACTACGGTCAACATTGGTTGCTGCTGTATTTCGGAAATCTTTAAGGCTTACTCATGAAGCTCGAAAGAAGTTTCCATCCGGAAAGATAACCAACCTGATGACAACTGATGCTGAAGCACTTCAGCAAGTAACCCAGTCTCTTCACACTTTGTGGTCAGCACCATTTCGTATCACGATCTGCATGGTTCTTCTTTACCAAGAATTGGGTGTTGCTTCACTACTTGGTGCACTCATGTTAGTTCTTATGTTCCCCCTACAGACTCTTGTTATAAGCAAAATGCAGAAATTGTCTAAGGAGGGGTTGCAACGTACAGACAAGAGAATTGGCCTAATGAATGAAATTTTGGCTGCAATGGACACTGTGAAATGTTATGCATGGGAGAGTAGTTTTCAATCCAAGGTACAAAGTGTCCGAACTGAAGAATTGTACTGGTTTCGGAAAGCATCTCTACTGGGAGCGTGTAATGCATTTATACTAAATAGCATCCCAGTTGTGGTCACTGTGATTTCCTTTGGATTGTTCACTTTTCTTGGGGGAAATCTCACACCTGCAAGGGCGTTTACATCACTGTCTCTATTTGCTGTGCTTCGATTTCCCCTATTCATGCTTCCTAATATAATAACTCAGGCGGTTAATGCTAACGTATCTGTAAAGCGCCTGGAGGAATTACTTTTAGCTGAAGAGCGAGTTCTTCTGCCAAATCCTCCTCTTGATCCAGGACTGCCGGCCATCTCAATTAAGAATGGATTCTTTTCTTGGGATTCAAAGACCTTGAAAATTTATGTTGTCCTTCAGGCAGAGAAGCCCACGTTGACAAATATCAATTTGGATATTCCTGTTGGGAGCTTGGTCGCAGTACGTGACAACATTTTATTTGGATCGTTCTTTGAGTCTTCAAGATATCAGAAGGCAATTGATGTGACTGCATTGCAGCATGACCTTGACTTATTGCCTGTTTTTGATAAATGCATCAAGGGAGAGTTAAGAGGGAAAACCAGAGTCCTTGTTACCAATCAGCTACATTTTCTTTCACAAGTTGATAGAATCATACTAGTTCATGATGGAATGGTGAAAGAGGAGGGAACATTTGAGGAGCTTTCCAACAATGGCGTGATGTTCCAAAGGCTAATGGAAAATGCGGGAAAGATGGAAGAGTATGGGGAAGAGAAAGAAGATGATGAAACTGTTGATCAGAATGGCGAAACAATTGAACATAATCCCTCTTTGAAACCTATTGTCAACGGGGTTGTCCATGATATGTCAAAAACTGCAAGCCATGCAAGTAAACAAAAAGAAGGAAAATCTGTTCTTATTAAACAAGAAGAAAGGGAAACAGGAGTTGTCAACTTGAAGGTGTTGGCGAGGTATAAGAATGCATTAGGAGGCTTGTGGGTGGTTCTCATACTCTTTACATGCTATATTTCAACTGAGGTTCTACGAGTTTCAAGTAGCACGTGGTTGAGCCATTGGACTAATCAAGGCATAACAGGGAAATATGACCCTAGTTTCTACAATCTGATATACGCACTTCTATCTTTTGGTCAGGTTATGGTGACACTGGCAAACTCTTTTTGGTTGATTATTTCTAGTCTTTATGCTGCGAGGAGGTTGCATGATGCCATGCTTGGGTCCATATTAAGAGCTCCTATGGTCTTTTTCCAGACCAATCCCCTTGGCAGGATCATTAACAGATTTGCAAAGGATCTTGGAGATATTGATCGGAGTGTGGCTCTATTTGCAAACATGTTTCTTGGTCAAGTTTCTCAGCTCTTTTCTACTTTCATCTTAATAGGGATCGTGAGCACTATGTCCTTGTGGGCCATTCTGCCTCTTTTGGTTTTGTTTTATGCAGCCTATCTATACTATCAGAGCATGGCCCGCGAGGTGAAGCGCTTGGACTCCATCAGCAGATCCCCTGTTTATGCCCAATTTGGAGAAGCATTGAATGGTATATCATCGATTCGTGCATATAAGGCTTATGATCGGATGGCAGAGATTAATGGAAAGTCTGTGGACAACAATATCAGATTCACGCTGGTGAATATAAGTGCAAATCGGTGGCTTGCAATCCGTTTGGAAGCATTGGGAGGTCTCATGATATGGTTTACAGCTACCTTTGCTGTTATGCAGAATGGAAGGGCAGAGAACCAGGAGGAGTTTGCATCCACCATGGGTCTCCTTCTTAGTTATGCTCTTAATATTACAAGTCTAATGACTGGTGTACTGAGACTTGCAAGTCTGGCTGAGAATAGCTTAAATGCTGTTGAGCGGGTTGGCACATATATAGAGTTGCCTTCAGAAGCTCCTGCTGTAATTGAGAGCAACCGCCCCCCTCCAGGATGGCCTTCATCTGGATCCATTAAGTTTGAAGATGTTGTTCTGCGTTATAGACCTGAACTTCCTCCAGTTTTGCATGAGTTGTCTTTCACAATTTCTCCAAGCGACAAGGTCGGAATAGTTGGAAGGACTGGGGCAGGGAAGTCCAGCATGCTAAATGCTTTATTTCGAATTGTTGAATTGGAGAGAGGAAGAATTTTGATTGATGGTTGTGATATTGGTAAGTTTGGACTCGAAGATCTACGGAAAGTTCTTGGTATTATTCCACAGGCACCCGTTCTTTTTTCAGCAAAATTTTTGTGCCTCCAGGTTCGAGAATATGATACTCCAGAGCACCTGCTGTCAAATGAAAGAAGCGCTTTCTCTAAAATGGTGCAGAGCACAGGCGCAGCAAATGCCCAATATTTACGAAGCTTGGTCCTTGGGGAGGGAGGAGAAAACAGAAGAGAGGACAACAGCCAACTAGATGGACAGAGGAGATGGCTGGCCTCTTCTCGCTGGGCTGCAGCTGCCCAGTTTGCCGTTGCTGTTAGCCTTACTTCATCCCAGAATGACCTTCAAAGGTTGGAGTTTGAAGACCAGGACAGTATCCTCTATAAGACGAAGGATGCGGTGATAACTCTCCGAGGAGTCTTGGAAGGGAAGCATGACAAAGTTATTGAAGAGTCACTTGATCAATACCAGATCTCTAGAGATGGGTGGTGGTCATCTCTCTACCGAATGGTTGAAGGTCTTGCTGTAATGAGCAGACTGTCGAGGAGTAGGCTTCACCAGTCAGAAATTGGTTTCGAAGACAGATCGATCAACTGGGACCATGCTGATATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0042946 GO:0042947 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098588 GO:0098805 GO:1901264 GO:1901505 GO:1901656 GO:1902417 GO:1902418

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04071 ko04976 ko04977 ko05206 map01523 map01524 map02010 map04071 map04976 map04977 map05206

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

1425

Amino Acids

160.53

Weight (kDa)

8.59

Isoelectric Point (pI)

43.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	307 - 571	3.9e-35	ABC transporter transmembrane region
ABC_membrane	PF00664	838 - 1081	4.4e-35	ABC transporter transmembrane region
ABC_tran	PF00005	1175 - 1248	3.6e-12	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006461)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30400 AT1G30400 AT2G34660 AT2G34660 AT2G34660
fragaria_vesca	FvH4_2g14980 FvH4_2g14980 FvH4_2g14980
malus_domestica	MD05G1275500.v1.1
prunus_persica	Prupe.4G088500_v2.0.a1 Prupe.4G088500_v2.0.a1 Prupe.4G088500_v2.0.a1 Prupe.4G088500_v2.0.a1 Prupe.4G088500_v2.0.a1
pyrus_communis	pycom05g25670 pycom10g21060
rosa_chinensis	RchiOBHm_Chr5g0015421
rosa_laevigata	RLG00000032198
rosa_multiflora	Rmu_ssc0000168.1_g000001
rosa_roxburghii	Rroxscaffold_1G00061060
rosa_rugosa	Rorug05G0027300
rosa_samantha	Rh5AG120900 Rh5BG119700 Rh5CG130500 Rh5DG118800
rosa_wichuraiana	Rw5G010440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1382
AarI	CACCTGC	2 cut(s)	1669, 3795
AasI	GACNNNNNNGTC	1 cut(s)	3348
Acc36I	ACCTGC	2 cut(s)	1669, 3795
AccB1I	GGYRCC	1 cut(s)	3721
AccB7I	CCANNNNNTGG	2 cut(s)	605, 1315
AccBSI	CCGCTC	1 cut(s)	3382
AccII	CGCG	2 cut(s)	98, 2994
AccIII	TCCGGA	1 cut(s)	1190
AciI	CCGC	8 cut(s)	98, 734, 1742, 2252, 2992, 3382, 3439, 4061
AcoI	YGGCCR	2 cut(s)	39, 1839
AcsI	RAATTY	8 cut(s)	285, 298, 564, 589, 1452, 1890, 3645, 3743
AcuI	CTGAAG	6 cut(s)	1217, 1245, 1551, 1812, 1889, 3393
AcvI	CACGTG	1 cut(s)	2568
AdeI	CACNNNGTG	2 cut(s)	93, 1263
AfaI	GTAC	9 cut(s)	135, 218, 253, 530, 1423, 1515, 1541, 1971, 3336
AfeI	AGCGCT	3 cut(s)	1057, 3005, 3808
AflIII	ACRYGT	1 cut(s)	2856
AhlI	ACTAGT	1 cut(s)	2164
AjnI	CCWGG	9 cut(s)	15, 604, 661, 1770, 1828, 3261, 3448, 3756, 4029
AjuI	GAANNNNNNNTTGG	4 cut(s)	164, 196, 1439, 1471
AleI	CACNNNNGTG	1 cut(s)	3149
AloI	GAACNNNNNNTCC	2 cut(s)	2403, 2435
Alw21I	GWGCWC	6 cut(s)	371, 1342, 2758, 2918, 3786, 3833
Alw26I	GTCTC	6 cut(s)	360, 1254, 1689, 3209, 3293, 3334
Alw44I	GTGCAC	1 cut(s)	1338
Aor13HI	TCCGGA	1 cut(s)	1190
Aor51HI	AGCGCT	3 cut(s)	1057, 3005, 3808
ApaLI	GTGCAC	1 cut(s)	1338
ApoI	RAATTY	8 cut(s)	285, 298, 564, 589, 1452, 1890, 3645, 3743
AseI	ATTAAT	1 cut(s)	3111
Asp700I	GAANNNNTTC	4 cut(s)	500, 657, 1230, 1859
AspLEI	GCGC	7 cut(s)	98, 325, 1058, 1770, 3006, 3809, 3839
AspS9I	GGNCC	7 cut(s)	168, 959, 2742, 2931, 2989, 3868, 4261
AsuHPI	GGTGA	7 cut(s)	109, 2194, 2677, 3010, 3163, 4075, 4211
AsuII	TTCGAA	2 cut(s)	3619, 4239
AvaII	GGWCC	4 cut(s)	168, 2742, 3868, 4261
BaeGI	GKGCMC	1 cut(s)	1342
BalI	TGGCCA	1 cut(s)	41
BamHI	GGATCC	2 cut(s)	1003, 3467
BanI	GGYRCC	1 cut(s)	3721
BanII	GRGCYC	1 cut(s)	2758
BarI	GAAGNNNNNNTAC	2 cut(s)	488, 520
BbrPI	CACGTG	1 cut(s)	2568
BbsI	GAAGAC	3 cut(s)	1998, 4032, 4248
Bbv12I	GWGCWC	6 cut(s)	371, 1342, 2758, 2918, 3786, 3833
BbvCI	CCTCAGC	1 cut(s)	843
BceAI	ACGGC	1 cut(s)	3956
BcgI	CGANNNNNNTGC	2 cut(s)	2704, 2738
BciT130I	CCWGG	9 cut(s)	17, 606, 663, 1772, 1830, 3263, 3450, 3758, 4031
BciVI	GTATCC	2 cut(s)	784, 4049
BclI	TGATCA	3 cut(s)	276, 2302, 4123
BcoDI	GTCTC	6 cut(s)	360, 1254, 1689, 3209, 3293, 3334
BcuI	ACTAGT	1 cut(s)	2164
BfaI	CTAG	7 cut(s)	746, 891, 2165, 2616, 2700, 3914, 4140
BfmI	CTRYAG	5 cut(s)	108, 453, 505, 1367, 3954
BfoI	RGCGCY	4 cut(s)	1059, 1771, 3007, 3810
BfuAI	ACCTGC	2 cut(s)	1669, 3795
BfuI	GTATCC	2 cut(s)	784, 4049
BglI	GCCNNNNNGGC	1 cut(s)	239
BglII	AGATCT	4 cut(s)	402, 512, 3688, 4134
BlpI	GCTNAGC	1 cut(s)	258
Bme1390I	CCNGG	9 cut(s)	17, 606, 663, 1772, 1830, 3263, 3450, 3758, 4031
Bme18I	GGWCC	4 cut(s)	168, 2742, 3868, 4261
BmgT120I	GGNCC	7 cut(s)	168, 959, 2742, 2931, 2989, 3868, 4261
BmiI	GGNNCC	7 cut(s)	597, 960, 1005, 2743, 3469, 3723, 4262
BmrFI	CCNGG	9 cut(s)	17, 606, 663, 1772, 1830, 3263, 3450, 3758, 4031
BmrI	ACTGGG	7 cut(s)	943, 1240, 1574, 1595, 3591, 3958, 4267
BmuI	ACTGGG	7 cut(s)	943, 1240, 1574, 1595, 3591, 3958, 4267
BoxI	GACNNNNGTC	1 cut(s)	1117
BpiI	GAAGAC	3 cut(s)	1998, 4032, 4248
BplI	GAGNNNNNCTC	2 cut(s)	2827, 2859
BpmI	CTGGAG	6 cut(s)	684, 1793, 3432, 3501, 3740, 3762
Bpu10I	CCTNAGC	2 cut(s)	549, 843
Bpu1102I	GCTNAGC	1 cut(s)	258
Bpu14I	TTCGAA	2 cut(s)	3619, 4239
Bsa29I	ATCGAT	2 cut(s)	3071, 4250
BsaAI	YACGTR	2 cut(s)	1973, 2568
BsaBI	GATNNNNATC	2 cut(s)	407, 2829
BsaI	GGTCTC	2 cut(s)	3209, 3293
BsaJI	CCNNGG	9 cut(s)	15, 36, 866, 895, 1509, 2785, 3282, 3871, 4075
BsaWI	WCCGGW	1 cut(s)	1190
BsaXI	ACNNNNNCTCC	2 cut(s)	3532, 3562
Bse118I	RCCGGY	1 cut(s)	1837
Bse3DI	GCAATG	3 cut(s)	943, 1470, 2039
Bse8I	GATNNNNATC	2 cut(s)	407, 2829
BseAI	TCCGGA	1 cut(s)	1190
BseBI	CCWGG	9 cut(s)	17, 606, 663, 1772, 1830, 3263, 3450, 3758, 4031
BseCI	ATCGAT	2 cut(s)	3071, 4250
BseDI	CCNNGG	9 cut(s)	15, 36, 866, 895, 1509, 2785, 3282, 3871, 4075
BseGI	GGATG	9 cut(s)	469, 732, 1187, 1596, 3105, 3275, 3458, 3992, 4063
BseJI	GATNNNNATC	2 cut(s)	407, 2829
BseMI	GCAATG	3 cut(s)	943, 1470, 2039
BseSI	GKGCMC	1 cut(s)	1342
BseYI	CCCAGC	1 cut(s)	3948
BsgI	GTGCAG	1 cut(s)	3845
Bsh1236I	CGCG	2 cut(s)	98, 2994
BshNI	GGYRCC	1 cut(s)	3721
BshVI	ATCGAT	2 cut(s)	3071, 4250
BsiHKAI	GWGCWC	6 cut(s)	371, 1342, 2758, 2918, 3786, 3833
BsiSI	CCGG	2 cut(s)	1191, 1838
BslFI	GGGAC	2 cut(s)	191, 4274
BsmAI	GTCTC	6 cut(s)	360, 1254, 1689, 3209, 3293, 3334
BsmFI	GGGAC	2 cut(s)	191, 4274
BsmI	GAATGC	2 cut(s)	76, 2491
Bso31I	GGTCTC	2 cut(s)	3209, 3293
Bsp119I	TTCGAA	2 cut(s)	3619, 4239
Bsp1286I	GDGCHC	6 cut(s)	371, 1342, 2758, 2918, 3786, 3833
Bsp13I	TCCGGA	1 cut(s)	1190
Bsp1407I	TGTACA	2 cut(s)	216, 528
Bsp1720I	GCTNAGC	1 cut(s)	258
Bsp19I	CCATGG	2 cut(s)	866, 3282
BspACI	CCGC	8 cut(s)	98, 734, 1742, 2252, 2992, 3382, 3439, 4061
BspDI	ATCGAT	2 cut(s)	3071, 4250
BspEI	TCCGGA	1 cut(s)	1190
BspFNI	CGCG	2 cut(s)	98, 2994
BspHI	TCATGA	4 cut(s)	381, 1165, 2170, 3207
BspLI	GGNNCC	7 cut(s)	597, 960, 1005, 2743, 3469, 3723, 4262
BspMAI	CTGCAG	1 cut(s)	3958
BspMI	ACCTGC	2 cut(s)	1669, 3795
BspQI	GCTCTTC	1 cut(s)	1788
BspT104I	TTCGAA	2 cut(s)	3619, 4239
BspT107I	GGYRCC	1 cut(s)	3721
BspTNI	GGTCTC	2 cut(s)	3209, 3293
BsrBI	CCGCTC	1 cut(s)	3382
BsrDI	GCAATG	3 cut(s)	943, 1470, 2039
BsrFI	RCCGGY	1 cut(s)	1837
BsrGI	TGTACA	2 cut(s)	216, 528
BssAI	RCCGGY	1 cut(s)	1837
BssECI	CCNNGG	9 cut(s)	15, 36, 866, 895, 1509, 2785, 3282, 3871, 4075
BssT1I	CCWWGG	6 cut(s)	866, 895, 1509, 2785, 3282, 3871
Bst2UI	CCWGG	9 cut(s)	17, 606, 663, 1772, 1830, 3263, 3450, 3758, 4031
Bst6I	CTCTTC	7 cut(s)	1257, 1788, 2259, 2271, 3889, 3946, 4107
BstAPI	GCANNNNNTGC	2 cut(s)	2390, 3845
BstAUI	TGTACA	2 cut(s)	216, 528
BstBAI	YACGTR	2 cut(s)	1973, 2568
BstBI	TTCGAA	2 cut(s)	3619, 4239
BstC8I	GCNNGC	8 cut(s)	231, 693, 1839, 2386, 2992, 3177, 3602, 3936
BstDSI	CCRYGG	3 cut(s)	36, 866, 3282
BstEII	GGTNACC	1 cut(s)	1106
BstENI	CCTNNNNNAGG	1 cut(s)	3875
BstF5I	GGATG	9 cut(s)	469, 732, 1187, 1596, 3105, 3275, 3458, 3992, 4063
BstFNI	CGCG	2 cut(s)	98, 2994
BstH2I	RGCGCY	4 cut(s)	1059, 1771, 3007, 3810
BstHHI	GCGC	7 cut(s)	98, 325, 1058, 1770, 3006, 3809, 3839
BstMAI	GTCTC	6 cut(s)	360, 1254, 1689, 3209, 3293, 3334
BstNI	CCWGG	9 cut(s)	17, 606, 663, 1772, 1830, 3263, 3450, 3758, 4031
BstNSI	RCATGY	3 cut(s)	2529, 2860, 3604
BstPAI	GACNNNNGTC	1 cut(s)	1117
BstPI	GGTNACC	1 cut(s)	1106
BstSCI	CCNGG	9 cut(s)	15, 604, 661, 1770, 1828, 3261, 3448, 3756, 4029
BstSFI	CTRYAG	5 cut(s)	108, 453, 505, 1367, 3954
BstSLI	GKGCMC	1 cut(s)	1342
BstUI	CGCG	2 cut(s)	98, 2994
BstV2I	GAAGAC	3 cut(s)	1998, 4032, 4248
BstX2I	RGATCY	8 cut(s)	402, 512, 1003, 2815, 3023, 3467, 3688, 4134
BstXI	CCANNNNNNTGG	1 cut(s)	3917
BstYI	RGATCY	8 cut(s)	402, 512, 1003, 2815, 3023, 3467, 3688, 4134
Bsu15I	ATCGAT	2 cut(s)	3071, 4250
BsuI	GTATCC	2 cut(s)	784, 4049
BsuTUI	ATCGAT	2 cut(s)	3071, 4250
BtgI	CCRYGG	3 cut(s)	36, 866, 3282
BtsCI	GGATG	9 cut(s)	469, 732, 1187, 1596, 3105, 3275, 3458, 3992, 4063
BtsIMutI	CAGTG	8 cut(s)	297, 498, 541, 812, 1470, 1611, 1679, 2669
BveI	ACCTGC	2 cut(s)	1669, 3795
Cac8I	GCNNGC	8 cut(s)	231, 693, 1839, 2386, 2992, 3177, 3602, 3936
CciI	TCATGA	4 cut(s)	381, 1165, 2170, 3207
CfoI	GCGC	7 cut(s)	98, 325, 1058, 1770, 3006, 3809, 3839
Cfr10I	RCCGGY	1 cut(s)	1837
Cfr13I	GGNCC	7 cut(s)	168, 959, 2742, 2931, 2989, 3868, 4261
ClaI	ATCGAT	2 cut(s)	3071, 4250
Csp6I	GTAC	9 cut(s)	134, 217, 252, 529, 1422, 1514, 1540, 1970, 3335
CspCI	CAANNNNNGTGG	2 cut(s)	951, 986
CviQI	GTAC	9 cut(s)	134, 217, 252, 529, 1422, 1514, 1540, 1970, 3335
DraI	TTTAAA	1 cut(s)	10
DraIII	CACNNNGTG	2 cut(s)	93, 1263
DrdI	GACNNNNNNGTC	1 cut(s)	3348
DseDI	GACNNNNNNGTC	1 cut(s)	3348
EaeI	YGGCCR	2 cut(s)	39, 1839
Eam1104I	CTCTTC	7 cut(s)	1257, 1788, 2259, 2271, 3889, 3946, 4107
EarI	CTCTTC	7 cut(s)	1257, 1788, 2259, 2271, 3889, 3946, 4107
Ecl136II	GAGCTC	1 cut(s)	2756
Eco130I	CCWWGG	6 cut(s)	866, 895, 1509, 2785, 3282, 3871
Eco24I	GRGCYC	1 cut(s)	2758
Eco31I	GGTCTC	2 cut(s)	3209, 3293
Eco32I	GATATC	1 cut(s)	2015
Eco47I	GGWCC	4 cut(s)	168, 2742, 3868, 4261
Eco47III	AGCGCT	3 cut(s)	1057, 3005, 3808
Eco53kI	GAGCTC	1 cut(s)	2756
Eco57I	CTGAAG	6 cut(s)	1217, 1245, 1551, 1812, 1889, 3393
Eco72I	CACGTG	1 cut(s)	2568
Eco91I	GGTNACC	1 cut(s)	1106
EcoICRI	GAGCTC	1 cut(s)	2756
EcoNI	CCTNNNNNAGG	1 cut(s)	3875
EcoO65I	GGTNACC	1 cut(s)	1106
EcoRI	GAATTC	1 cut(s)	564
EcoRII	CCWGG	9 cut(s)	15, 604, 661, 1770, 1828, 3261, 3448, 3756, 4029
EcoRV	GATATC	1 cut(s)	2015
EcoT14I	CCWWGG	6 cut(s)	866, 895, 1509, 2785, 3282, 3871
EcoT22I	ATGCAT	4 cut(s)	1489, 1582, 2084, 2491
EcoT38I	GRGCYC	1 cut(s)	2758
ErhI	CCWWGG	6 cut(s)	866, 895, 1509, 2785, 3282, 3871
FalI	AAGNNNNNCTT	6 cut(s)	164, 196, 3793, 3825, 4104, 4136
FaqI	GGGAC	2 cut(s)	191, 4274
FauI	CCCGC	3 cut(s)	2245, 2999, 3375
FauNDI	CATATG	1 cut(s)	649
FbaI	TGATCA	3 cut(s)	276, 2302, 4123
FokI	GGATG	9 cut(s)	476, 739, 1174, 1583, 3112, 3262, 3465, 3979, 4070
FriOI	GRGCYC	1 cut(s)	2758
FspBI	CTAG	7 cut(s)	746, 891, 2165, 2616, 2700, 3914, 4140
GlaI	GCGC	7 cut(s)	97, 324, 1057, 1769, 3005, 3808, 3838
GsaI	CCCAGC	1 cut(s)	3952
GsuI	CTGGAG	6 cut(s)	684, 1793, 3432, 3501, 3740, 3762
HaeII	RGCGCY	4 cut(s)	1059, 1771, 3007, 3810
HapII	CCGG	2 cut(s)	1191, 1838
HhaI	GCGC	7 cut(s)	98, 325, 1058, 1770, 3006, 3809, 3839
Hin6I	GCGC	7 cut(s)	96, 323, 1056, 1768, 3004, 3807, 3837
HinP1I	GCGC	7 cut(s)	96, 323, 1056, 1768, 3004, 3807, 3837
HincII	GTYRAC	4 cut(s)	1122, 1926, 2353, 2458
HindII	GTYRAC	4 cut(s)	1122, 1926, 2353, 2458
HindIII	AAGCTT	1 cut(s)	3862
HpaII	CCGG	2 cut(s)	1191, 1838
HphI	GGTGA	7 cut(s)	109, 2194, 2677, 3010, 3163, 4075, 4211
HpyCH4IV	ACGT	5 cut(s)	1420, 1755, 1922, 1972, 2567
HpySE526I	ACGT	5 cut(s)	1420, 1755, 1922, 1972, 2567
HspAI	GCGC	7 cut(s)	96, 323, 1056, 1768, 3004, 3807, 3837
Kpn2I	TCCGGA	1 cut(s)	1190
KroI	GCCGGC	1 cut(s)	1837
KroNI	GCCGGC	1 cut(s)	1839
Ksp22I	TGATCA	3 cut(s)	276, 2302, 4123
LguI	GCTCTTC	1 cut(s)	1788
LmnI	GCTCC	5 cut(s)	1568, 1956, 2206, 2761, 3421
MaeI	CTAG	7 cut(s)	746, 891, 2165, 2616, 2700, 3914, 4140
MaeII	ACGT	5 cut(s)	1420, 1755, 1922, 1972, 2567
MbiI	CCGCTC	1 cut(s)	3382
MfeI	CAATTG	3 cut(s)	633, 2025, 2319
MflI	RGATCY	8 cut(s)	402, 512, 1003, 2815, 3023, 3467, 3688, 4134
MhlI	GDGCHC	6 cut(s)	371, 1342, 2758, 2918, 3786, 3833
MlsI	TGGCCA	1 cut(s)	41
MluNI	TGGCCA	1 cut(s)	41
MlyI	GAGTC	8 cut(s)	113, 1366, 2012, 2121, 3005, 3675, 4089, 4124
MmeI	TCCRAC	4 cut(s)	2238, 3544, 3553, 3996
Mox20I	TGGCCA	1 cut(s)	41
Mph1103I	ATGCAT	4 cut(s)	1489, 1582, 2084, 2491
MroI	TCCGGA	1 cut(s)	1190
MroNI	GCCGGC	1 cut(s)	1837
MroXI	GAANNNNTTC	4 cut(s)	500, 657, 1230, 1859
MscI	TGGCCA	1 cut(s)	41
MslI	CAYNNNNRTG	1 cut(s)	3149
Msp20I	TGGCCA	1 cut(s)	41
MspA1I	CMGCKG	1 cut(s)	3959
MspI	CCGG	2 cut(s)	1191, 1838
MspR9I	CCNGG	9 cut(s)	17, 606, 663, 1772, 1830, 3263, 3450, 3758, 4031
MunI	CAATTG	3 cut(s)	633, 2025, 2319
Mva1269I	GAATGC	2 cut(s)	76, 2491
MvaI	CCWGG	9 cut(s)	17, 606, 663, 1772, 1830, 3263, 3450, 3758, 4031
MvnI	CGCG	2 cut(s)	98, 2994
NaeI	GCCGGC	1 cut(s)	1839
NcoI	CCATGG	2 cut(s)	866, 3282
NdeI	CATATG	1 cut(s)	649
NgoMIV	GCCGGC	1 cut(s)	1837
NlaIV	GGNNCC	7 cut(s)	597, 960, 1005, 2743, 3469, 3723, 4262
NmuCI	GTSAC	6 cut(s)	115, 1609, 1973, 2032, 2665, 4116
NsiI	ATGCAT	4 cut(s)	1489, 1582, 2084, 2491
NspI	RCATGY	3 cut(s)	2529, 2860, 3604
NspV	TTCGAA	2 cut(s)	3619, 4239
OliI	CACNNNNGTG	1 cut(s)	3149
PaeI	GCATGC	1 cut(s)	3604
PagI	TCATGA	4 cut(s)	381, 1165, 2170, 3207
PaqCI	CACCTGC	2 cut(s)	1669, 3795
PciI	ACATGT	1 cut(s)	2856
PciSI	GCTCTTC	1 cut(s)	1788
PctI	GAATGC	2 cut(s)	76, 2491
PdiI	GCCGGC	1 cut(s)	1839
PdmI	GAANNNNTTC	4 cut(s)	500, 657, 1230, 1859
PfeI	GAWTC	8 cut(s)	629, 730, 973, 1860, 1874, 2157, 3073, 3141
PflFI	GACNNNGTC	1 cut(s)	3560
PflMI	CCANNNNNTGG	2 cut(s)	605, 1315
PfoI	TCCNGGA	3 cut(s)	661, 1828, 3448
PleI	GAGTC	8 cut(s)	112, 1366, 2011, 2120, 3005, 3675, 4088, 4123
PmaCI	CACGTG	1 cut(s)	2568
PmlI	CACGTG	1 cut(s)	2568
PpsI	GAGTC	8 cut(s)	112, 1366, 2011, 2120, 3005, 3675, 4088, 4123
Ppu21I	YACGTR	2 cut(s)	1973, 2568
PscI	ACATGT	1 cut(s)	2856
PshAI	GACNNNNGTC	1 cut(s)	1117
PshBI	ATTAAT	1 cut(s)	3111
PsiI	TTATAA	1 cut(s)	1382
Psp124BI	GAGCTC	1 cut(s)	2758
Psp6I	CCWGG	9 cut(s)	15, 604, 661, 1770, 1828, 3261, 3448, 3756, 4029
PspCI	CACGTG	1 cut(s)	2568
PspEI	GGTNACC	1 cut(s)	1106
PspFI	CCCAGC	1 cut(s)	3948
PspGI	CCWGG	9 cut(s)	15, 604, 661, 1770, 1828, 3261, 3448, 3756, 4029
PspN4I	GGNNCC	7 cut(s)	597, 960, 1005, 2743, 3469, 3723, 4262
PspPI	GGNCC	7 cut(s)	168, 959, 2742, 2931, 2989, 3868, 4261
PstI	CTGCAG	1 cut(s)	3958
PsuI	RGATCY	8 cut(s)	402, 512, 1003, 2815, 3023, 3467, 3688, 4134
PsyI	GACNNNGTC	1 cut(s)	3560
PvuII	CAGCTG	1 cut(s)	3959
RsaI	GTAC	9 cut(s)	135, 218, 253, 530, 1423, 1515, 1541, 1971, 3336
RsaNI	GTAC	9 cut(s)	134, 217, 252, 529, 1422, 1514, 1540, 1970, 3335
RseI	CAYNNNNRTG	1 cut(s)	3149
SacI	GAGCTC	1 cut(s)	2758
SapI	GCTCTTC	1 cut(s)	1788
Sau96I	GGNCC	7 cut(s)	168, 959, 2742, 2931, 2989, 3868, 4261
SchI	GAGTC	8 cut(s)	113, 1366, 2012, 2121, 3005, 3675, 4089, 4124
ScrFI	CCNGG	9 cut(s)	17, 606, 663, 1772, 1830, 3263, 3450, 3758, 4031
SduI	GDGCHC	6 cut(s)	371, 1342, 2758, 2918, 3786, 3833
SfcI	CTRYAG	5 cut(s)	108, 453, 505, 1367, 3954
SfuI	TTCGAA	2 cut(s)	3619, 4239
SinI	GGWCC	4 cut(s)	168, 2742, 3868, 4261
SmiMI	CAYNNNNRTG	1 cut(s)	3149
SpeI	ACTAGT	1 cut(s)	2164
SphI	GCATGC	1 cut(s)	3604
SsiI	CCGC	8 cut(s)	98, 734, 1742, 2252, 2992, 3382, 3439, 4061
SspI	AATATT	4 cut(s)	717, 1041, 3313, 3854
SspMI	CTAG	7 cut(s)	746, 891, 2165, 2616, 2700, 3914, 4140
SstI	GAGCTC	1 cut(s)	2758
StyD4I	CCNGG	9 cut(s)	15, 604, 661, 1770, 1828, 3261, 3448, 3756, 4029
StyI	CCWWGG	6 cut(s)	866, 895, 1509, 2785, 3282, 3871
TaiI	ACGT	5 cut(s)	1423, 1758, 1925, 1975, 2570
TatI	WGTACW	5 cut(s)	216, 251, 528, 1539, 3334
TfiI	GAWTC	8 cut(s)	629, 730, 973, 1860, 1874, 2157, 3073, 3141
TscAI	CASTG	8 cut(s)	297, 498, 541, 819, 1477, 1618, 1686, 2676
TseFI	GTSAC	6 cut(s)	115, 1609, 1973, 2032, 2665, 4116
Tsp45I	GTSAC	6 cut(s)	115, 1609, 1973, 2032, 2665, 4116
TspGWI	ACGGA	4 cut(s)	81, 782, 3173, 3709
TspRI	CASTG	8 cut(s)	297, 498, 541, 819, 1477, 1618, 1686, 2676
Tth111I	GACNNNGTC	1 cut(s)	3560
Van91I	CCANNNNNTGG	2 cut(s)	605, 1315
VneI	GTGCAC	1 cut(s)	1338
VpaK11BI	GGWCC	4 cut(s)	168, 2742, 3868, 4261
VspI	ATTAAT	1 cut(s)	3111
XagI	CCTNNNNNAGG	1 cut(s)	3875
XapI	RAATTY	8 cut(s)	285, 298, 564, 589, 1452, 1890, 3645, 3743
XbaI	TCTAGA	1 cut(s)	4139
XceI	RCATGY	3 cut(s)	2529, 2860, 3604
XcmI	CCANNNNNNNNNTGG	1 cut(s)	4229
XmnI	GAANNNNTTC	4 cut(s)	500, 657, 1230, 1859
XspI	CTAG	7 cut(s)	746, 891, 2165, 2616, 2700, 3914, 4140
Zsp2I	ATGCAT	4 cut(s)	1489, 1582, 2084, 2491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.