Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0006461

Physical Location & Seq

Genomic Coordinates Forward (+)

11247841 .. 11260963

Gene Structure 13123 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG119700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4422 bp

ATGGGTTTTAAAGCCCTGGATTGGTATTGTCGCCCGGTGGCCAATGGGGTCTGGGCAAAAGCTGTGCTGAATGCGTTTGGTGCATACACTCCGTGCGCGGTTGAGTCTATAGTTGTCTCCATTTCTCAGTTGGTTCTTCTGGCTATGTGCATCTATCGGATGTGGAGGATCAAGAAGGACTTGAAAGCCAAAAGGTTCTGTTTGAAGTCCAAACTGTACAACTATATGCTGGCCTTATTGGCTGGTTACTGTACTGCCGAGCCTCTGTATAGATTGATCATGGGAATTTCAGTGATGAATTTAGATGGTCAGTTTGGCCTTGCGCCATTTGAGGTGGTTTCTCTGATCTTACAGTCTCTTTCTTGGTGCTCTATGCTGGTCATGATTGGTGTGGAAACCAAGATCTATATCTGTGAGTTTCGATGGTTTGTAAGATTTGGAGTAATTTATACTATAGTAGGGGATGCTGTGGTGTTCAATCTCATTCTTACAGTGAAGGACTTCTACAGCAGATCTGTATTTTATTTGTACATCAGTGAAGTTGTTGCACAGGTTTTGTTTGGAATTCTTTTGGCTGTGTATGTTCCAAATTTGGTTCCATATCCTGGTTACACTCCAATCCAAACTGAATCAATTGATGATGCTGCATATGAAGAACTTCCTGGAGGAGAGCATATATGTCCTGAGAGGCAGGCCAACATATTGTCAAGAGTAATATTTTCATGGATGAATCCCCTTATGAAGCTAGGCTATCAAAGACCCCTCACGGAGAAAGATATTTGGAAATTGGATACTTGGGAACGAACTGAAACACTGAACAATAAGTTTCAAAAATGTTGGGCTGAGGAAATACGAAAGCCTAAACCATGGCTTTTAAGAGCATTGAACTCTAGCCTTGGGGGAAGGTTTTGGTGGGGAGGCTTTTGGAAGATTGGCAATGATCTTTCCCAGTTTACGGGGCCGCTTATTTTGAATCAGCTCTTACAGTCTATGCAACGAGGGGATCCAGCATGGATTGGTTACATCTATGCCTTCTCAATATTTCTTGGAGTGAGCGTTGGTGTGCTATTTGAAGCTCAGTATTTTCAAAATGTTATGCGTGTTGGTTACCGACTACGATCAACATTGGTTGCTGCTGTATTTCGGAAATCTTTAAGGCTTACTCATGAAGCTCGAAAGAAGTTTCCATCCGGAAAGATAACCAACCTGATGACAACTGATGCTGAAGCACTTCAGCAAGTAACCCAGTCTCTTCACACTTTGTGGTCAGCACCATTTCGTATCACAATCTGCATGGTTCTCCTTTACCAAGAATTGGGTGTTGCTTCACTACTTGGTGCACTCATGTTAGTTCTTATGTTCCCCCTACAGACTTTGGTCATAAGCAAAATGCAGAAATTGTCTAAGGAGGGGTTGCAACGTACAGACAAGAGAATTGGCCTAATGAATGAAATTTTGGCTGCAATGGACACTGTGAAATGTTATGCATGGGAGAGTAGTTTTCAATCCAAGGTACAAAGTGTCCGAACTGAAGAATTGTACTGGTTTCGGAAAGCATCACTACTGGGAGCGTGTAATGGATTTATACTAAATAGCATCCCAGTTGTGGTCACTGTGATTTCCTTTGGATTGTTCACTTTGCTTGGGGGAAATCTCACACCTGCAAGGGCGTTTACATCACTGTCTCTATTTGCTGTGCTTCGATTTCCCCTATTCATGCTTCCTAATATAATAACTCAGGCGGTTAATGCTAACGTATCCGTAAAGCGCCTGGAGGAATTACTTTTAGCTGAAGAGCGAGTTCTTCTGCCAAATCCTCCTCTTGATCCAGGACTGCCGGCCATCTCAATTAAGAATGGATTCTTTTCTTGGGATTCAAAGGCGGAGAAACCCACGTTGACAAATATCAATTTGGATATTCCTGTTGGGAGCTTGGTCGCAGTTGTTGGCAGTACTGGTGAAGGGAAGACATCACTTATATCTGCAATGCTAGGGGAGCTTCCTTCTGTAGCAAACACGAGTGTTGTAATGAGAGGAATGGTTGCTTATGTTCCACAAGTTTCATGGATTTTTAACGCAACCGTACGTGACAACATTCTATTTGGATCATTCTTTGAGTCTTCAAGATATCAGAAGGCAATTGATGTGACTGCATTGCAGCATGACCTTGACTTATTGCCTGGTGGTGATCTGACTGAGATTGGTGAAAGAGGAGTGAATATTAGTGGTGGACAGAAGCAAAGAGTCTCTATGGCTAGGGCTGTCTACTCCAATTCTGATGTATATGTTTTTGATGATCCCTTGAGTGCCCTTGATGCTCATGTGGCTCGACAGGTTTTTGATAAATGCATCAAGGGAGAGTTAAGAGGGAAAACTAGAGTCCTTGTTACCAATCAGCTACATTTTCTTTCGCAAGTTGATAGAATCATTCTAGTTCATGATGGAATGGTGAAAGAGGAGGGAACATTTGAGGAGCTTTCCAACAATGGCGTGATGTTCCAAAGGCTAATGGAAAATGCAGGAAAGATGGAAGAGTATGGGGAAGAGAAAGAAGATGATGAAACTGTTGATCAGAATGGCGAAACAATTGATCATAATGCCTCTTTGAAACCTATTGTCAACGGGGTTGTCCATGATATGTCAAAAACTGCAAGCCATGCAAGTAAACAAAAAGAAGGAAAATCTGTTCTTATTAAACAAGAAGAAAGGGAAACAGGAGTTGTCAGCGTGAAGGTGTTGGCGAGGTATAAGAATGCATTAGGAGGCTTGTGGGTGGTTCTCATACTCTTTACATGCTATATTTCAACTGAGGTTCTACGAGTTTCAAGTAGCACGTGGTTGAGCCATTGGACTAATCAAGGCATAACAGGGAAATATGACCCTGGTTTCTACAATCTGATATACGCAATTCTATCTTTTGGTCAGGTTATGGTGACACTGGCAAACTCTTATTGGTTGATTCTTTCTAGTCTTTATGCTGCGAGGAGGTTGCATGATGCCATGCTTGGGTCCATATTAAGAGCTCCTATGGTCTTTTTCCAGACCAATCCCCTTGGCAGGATCATTAACAGATTTGCAAAGGATCTTGGAGATATTGATCGGAATGTGGCTCCATTTGTAAACATGTTTCTTGGTCAAGTTTCTCAGCTCTTTTCTACTTTCATCTTAATAGGGATCGTGAGCACTATGTCCTTGTGGGCCATTCTGCCTCTTTTGGTTTTGTTTTATGCAGCCTATCTATACTATCAGAGCATGGCCCGCGAGGTGAAGCGCTTGGACTCCATCAGCAGATCCCCTGTTTATGCCCAATTTGGAGAAGCATTGAATGGTATATCATCGATTCGTGCATATAAGGCTTATGATCGGATGGCAGCGATTAATGGAAAGTCTGTGGACAACAATATCAGATTCACGCTGGTGAATATAAGTGCAAATCGGTGGCTTGCAATCCGTTTGGAAGCATTGGGAGGTCTCATGATATGGTTCACAGCTACCTTTGCTGTTATGCAGAATGGAAGGGCAGAGAACCAGCAGGAGTTTGCATCCACTATGGGTCTCCTTCTTAGTTATGCTCTTAATATTACAAGTCTAATGACTGGTGTACTGAGACTTGCAAGTCTGGCTGAGAATAGCTTAAATGCTGTTGAGCGGGTTGGCACATATATAGAGTTGCCTTCAGAAGCTCCTGCTGTAATTGAGAGCAACCGCCCCCCTCCAGGATGGCCTTCATCTGGATCCATTAAGTTTGAAGATGTTGTTCTGCGTTATAGACCTGAACTTCCTCCAGTTTTGCATGAGTTGTCTTTCACAATTTCTCCAAGCGACAAGGTCGGAATAGTTGGAAGGACTGGGGCAGGGAAGTCCAGCATGCTAAATGCTTTATTTCGAATTGTTGAATTAGAGAGAGGAAGAATTTTGATTGATGGTTGTGATATTGGTAAGTTTGGACTCGAAGATCTACGGAAAGTTCTTGGTATTATTCCACAGGCACCCGTTCTTTTTTCAGGAACTGTGAGATTTAATCTCGATCCATTTCAAGAACATAATGATGCTGACCTATGGGAGGCTTTAGAGAGGGCACATTTGAAGGATGCCATCAGGAGGAATTCTTTGGGTTTAGATGCCGAGGTCTCGGAGTCAGGAGAGAATTTCAGTGTTGGACAGCGGCAACTATTGAGTCTTGCTCGAGCACTCTTGCGAAGATCAAAAATACTTGTTCTTGACGAAGCAACTGCAGCTGTTGATGTCAGAACTGATGCTCTTATTCAGAAAACTATTCGTGAAGAATTTAGATCATGTACAATGCTCATTATTGCTCATCGTCTAAATACCATTATTGACTGTGACCGAATCCTTCTGCTTGATAATGGCCGGGTATGCTTTAATTTAGAGTTCTTTAAGCTCACTCTTACTATATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0042946 GO:0042947 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098588 GO:0098805 GO:1901264 GO:1901505 GO:1901656 GO:1902417 GO:1902418

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04071 ko04976 ko04977 ko05206 map01523 map01524 map02010 map04071 map04976 map04977 map05206

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

1473

Amino Acids

164.95

Weight (kDa)

8.64

Isoelectric Point (pI)

37.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	307 - 571	8.3e-35	ABC transporter transmembrane region
ABC_tran	PF00005	633 - 768	2e-16	ABC transporter
ABC_membrane	PF00664	927 - 1170	4.3e-34	ABC transporter transmembrane region
ABC_tran	PF00005	1264 - 1412	1.2e-26	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006461)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30400 AT1G30400 AT2G34660 AT2G34660 AT2G34660
fragaria_vesca	FvH4_2g14980 FvH4_2g14980 FvH4_2g14980
malus_domestica	MD05G1275500.v1.1
prunus_persica	Prupe.4G088500_v2.0.a1 Prupe.4G088500_v2.0.a1 Prupe.4G088500_v2.0.a1 Prupe.4G088500_v2.0.a1 Prupe.4G088500_v2.0.a1
pyrus_communis	pycom05g25670 pycom10g21060
rosa_chinensis	RchiOBHm_Chr5g0015421
rosa_laevigata	RLG00000032198
rosa_multiflora	Rmu_ssc0000168.1_g000001
rosa_roxburghii	Rroxscaffold_1G00061060
rosa_rugosa	Rorug05G0027300
rosa_samantha	Rh5AG120900 Rh5BG119700 Rh5CG130500 Rh5DG118800
rosa_wichuraiana	Rw5G010440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1669
AasI	GACNNNNNNGTC	1 cut(s)	3615
Acc36I	ACCTGC	1 cut(s)	1669
AccB1I	GGYRCC	1 cut(s)	3988
AccB7I	CCANNNNNTGG	2 cut(s)	605, 1315
AccBSI	CCGCTC	1 cut(s)	3649
AccI	GTMKAC	1 cut(s)	2265
AccII	CGCG	2 cut(s)	98, 3261
AccIII	TCCGGA	1 cut(s)	1190
AciI	CCGC	8 cut(s)	98, 962, 1742, 1883, 3259, 3649, 3706, 4165
AcoI	YGGCCR	3 cut(s)	39, 1839, 4369
AcsI	RAATTY	9 cut(s)	285, 298, 564, 589, 1452, 3912, 4105, 4147, 4286
AcuI	CTGAAG	5 cut(s)	1217, 1245, 1551, 1812, 3660
AcvI	CACGTG	1 cut(s)	2835
AdeI	CACNNNGTG	2 cut(s)	93, 1263
AfeI	AGCGCT	1 cut(s)	3272
AflIII	ACRYGT	1 cut(s)	3123
AjnI	CCWGG	8 cut(s)	15, 604, 661, 1770, 1828, 2179, 2881, 3715
AjuI	GAANNNNNNNTTGG	2 cut(s)	1439, 1471
AleI	CACNNNNGTG	1 cut(s)	3416
AloI	GAACNNNNNNTCC	2 cut(s)	2670, 2702
Alw21I	GWGCWC	5 cut(s)	371, 1342, 3025, 3185, 4192
Alw26I	GTCTC	9 cut(s)	121, 360, 1254, 1689, 2251, 3476, 3560, 3601, 4135
Alw44I	GTGCAC	1 cut(s)	1338
AlwNI	CAGNNNCTG	1 cut(s)	4010
Ama87I	CYCGRG	1 cut(s)	4185
Aor13HI	TCCGGA	1 cut(s)	1190
Aor51HI	AGCGCT	1 cut(s)	3272
ApaLI	GTGCAC	1 cut(s)	1338
ApeKI	GCWGC	8 cut(s)	644, 1133, 1460, 2158, 2978, 3230, 3371, 4235
ApoI	RAATTY	9 cut(s)	285, 298, 564, 589, 1452, 3912, 4105, 4147, 4286
AseI	ATTAAT	1 cut(s)	3378
Asp700I	GAANNNNTTC	4 cut(s)	500, 657, 1230, 1859
AspLEI	GCGC	4 cut(s)	98, 325, 1770, 3273
AspS9I	GGNCC	4 cut(s)	959, 3009, 3198, 3256
AsuC2I	CCSGG	2 cut(s)	35, 4373
AsuHPI	GGTGA	7 cut(s)	1970, 2198, 2216, 2461, 2944, 3277, 3430
AsuII	TTCGAA	1 cut(s)	3886
AvaI	CYCGRG	1 cut(s)	4185
AvaII	GGWCC	1 cut(s)	3009
BaeGI	GKGCMC	3 cut(s)	1342, 2311, 4081
BalI	TGGCCA	1 cut(s)	41
BamHI	GGATCC	2 cut(s)	1003, 3734
BanI	GGYRCC	1 cut(s)	3988
BanII	GRGCYC	1 cut(s)	3025
BarI	GAAGNNNNNNTAC	2 cut(s)	488, 520
BauI	CACGAG	1 cut(s)	2017
BbrPI	CACGTG	1 cut(s)	2835
BbsI	GAAGAC	2 cut(s)	1973, 2112
Bbv12I	GWGCWC	5 cut(s)	371, 1342, 3025, 3185, 4192
BbvCI	CCTCAGC	1 cut(s)	843
BbvI	GCAGC	8 cut(s)	631, 1120, 1447, 2170, 2965, 3242, 3383, 4247
BcgI	CGANNNNNNTGC	4 cut(s)	2971, 3005, 4214, 4248
BciT130I	CCWGG	8 cut(s)	17, 606, 663, 1772, 1830, 2181, 2883, 3717
BciVI	GTATCC	2 cut(s)	784, 1768
BclI	TGATCA	3 cut(s)	276, 2569, 2590
BcnI	CCSGG	2 cut(s)	35, 4373
BcoDI	GTCTC	9 cut(s)	121, 360, 1254, 1689, 2251, 3476, 3560, 3601, 4135
BfaI	CTAG	7 cut(s)	746, 891, 1991, 2256, 2376, 2432, 2967
BfmI	CTRYAG	6 cut(s)	108, 453, 505, 1367, 2007, 4233
BfoI	RGCGCY	2 cut(s)	1771, 3274
BfuAI	ACCTGC	1 cut(s)	1669
BfuI	GTATCC	2 cut(s)	784, 1768
BglI	GCCNNNNNGGC	1 cut(s)	239
BglII	AGATCT	3 cut(s)	402, 512, 3955
BmcAI	AGTACT	1 cut(s)	1954
Bme18I	GGWCC	1 cut(s)	3009
BmeT110I	CYCGRG	1 cut(s)	4185
BmgT120I	GGNCC	4 cut(s)	959, 3009, 3198, 3256
BmiI	GGNNCC	7 cut(s)	597, 960, 1005, 3010, 3111, 3736, 3990
BmrI	ACTGGG	5 cut(s)	943, 1240, 1574, 1595, 3858
BmuI	ACTGGG	5 cut(s)	943, 1240, 1574, 1595, 3858
BoxI	GACNNNNGTC	1 cut(s)	1376
BpiI	GAAGAC	2 cut(s)	1973, 2112
BplI	GAGNNNNNCTC	2 cut(s)	4168, 4200
BpmI	CTGGAG	4 cut(s)	684, 1793, 3699, 3768
Bpu10I	CCTNAGC	1 cut(s)	843
Bpu14I	TTCGAA	1 cut(s)	3886
BpuEI	CTTGAG	1 cut(s)	2323
BpuMI	CCSGG	2 cut(s)	35, 4373
Bsa29I	ATCGAT	1 cut(s)	3338
BsaAI	YACGTR	2 cut(s)	2087, 2835
BsaBI	GATNNNNATC	2 cut(s)	407, 3096
BsaI	GGTCTC	3 cut(s)	3476, 3560, 4135
BsaJI	CCNNGG	7 cut(s)	15, 866, 895, 1509, 2881, 3052, 4125
BsaWI	WCCGGW	1 cut(s)	1190
BsaXI	ACNNNNNCTCC	4 cut(s)	1041, 1071, 3799, 3829
Bse118I	RCCGGY	1 cut(s)	1837
Bse3DI	GCAATG	4 cut(s)	943, 1470, 1992, 2153
Bse8I	GATNNNNATC	2 cut(s)	407, 3096
BseAI	TCCGGA	1 cut(s)	1190
BseBI	CCWGG	8 cut(s)	17, 606, 663, 1772, 1830, 2181, 2883, 3717
BseCI	ATCGAT	1 cut(s)	3338
BseDI	CCNNGG	7 cut(s)	15, 866, 895, 1509, 2881, 3052, 4125
BseGI	GGATG	9 cut(s)	165, 469, 732, 1187, 1596, 3372, 3542, 3725, 4096
BseJI	GATNNNNATC	2 cut(s)	407, 3096
BseMI	GCAATG	4 cut(s)	943, 1470, 1992, 2153
BseRI	GAGGAG	6 cut(s)	681, 1809, 2226, 2471, 2486, 2998
BseSI	GKGCMC	3 cut(s)	1342, 2311, 4081
BseXI	GCAGC	8 cut(s)	631, 1120, 1447, 2170, 2965, 3242, 3383, 4247
Bsh1236I	CGCG	2 cut(s)	98, 3261
BshNI	GGYRCC	1 cut(s)	3988
BshVI	ATCGAT	1 cut(s)	3338
BsiHKAI	GWGCWC	5 cut(s)	371, 1342, 3025, 3185, 4192
BsiHKCI	CYCGRG	1 cut(s)	4185
BsiSI	CCGG	4 cut(s)	35, 1191, 1838, 4372
BsiWI	CGTACG	1 cut(s)	2083
BsmAI	GTCTC	9 cut(s)	121, 360, 1254, 1689, 2251, 3476, 3560, 3601, 4135
BsmI	GAATGC	2 cut(s)	76, 2758
Bso31I	GGTCTC	3 cut(s)	3476, 3560, 4135
BsoBI	CYCGRG	1 cut(s)	4185
Bsp119I	TTCGAA	1 cut(s)	3886
Bsp1286I	GDGCHC	7 cut(s)	371, 1342, 2311, 3025, 3185, 4081, 4192
Bsp13I	TCCGGA	1 cut(s)	1190
Bsp1407I	TGTACA	3 cut(s)	216, 528, 4298
Bsp19I	CCATGG	1 cut(s)	866
BspACI	CCGC	8 cut(s)	98, 962, 1742, 1883, 3259, 3649, 3706, 4165
BspDI	ATCGAT	1 cut(s)	3338
BspEI	TCCGGA	1 cut(s)	1190
BspFNI	CGCG	2 cut(s)	98, 3261
BspHI	TCATGA	4 cut(s)	381, 1165, 2437, 3474
BspLI	GGNNCC	7 cut(s)	597, 960, 1005, 3010, 3111, 3736, 3990
BspMAI	CTGCAG	1 cut(s)	4237
BspMI	ACCTGC	1 cut(s)	1669
BspQI	GCTCTTC	1 cut(s)	1788
BspT104I	TTCGAA	1 cut(s)	3886
BspT107I	GGYRCC	1 cut(s)	3988
BspTNI	GGTCTC	3 cut(s)	3476, 3560, 4135
BsrBI	CCGCTC	1 cut(s)	3649
BsrDI	GCAATG	4 cut(s)	943, 1470, 1992, 2153
BsrFI	RCCGGY	1 cut(s)	1837
BsrGI	TGTACA	3 cut(s)	216, 528, 4298
BssAI	RCCGGY	1 cut(s)	1837
BssECI	CCNNGG	7 cut(s)	15, 866, 895, 1509, 2881, 3052, 4125
BssSI	CACGAG	1 cut(s)	2017
BssT1I	CCWWGG	4 cut(s)	866, 895, 1509, 3052
Bst2BI	CACGAG	1 cut(s)	2017
Bst2UI	CCWGG	8 cut(s)	17, 606, 663, 1772, 1830, 2181, 2883, 3717
Bst6I	CTCTTC	4 cut(s)	1257, 1788, 2526, 2538
BstAPI	GCANNNNNTGC	1 cut(s)	2657
BstAUI	TGTACA	3 cut(s)	216, 528, 4298
BstBAI	YACGTR	2 cut(s)	2087, 2835
BstBI	TTCGAA	1 cut(s)	3886
BstC8I	GCNNGC	7 cut(s)	231, 693, 1839, 2653, 3259, 3444, 3869
BstDSI	CCRYGG	1 cut(s)	866
BstEII	GGTNACC	1 cut(s)	1106
BstENI	CCTNNNNNAGG	1 cut(s)	4061
BstF5I	GGATG	9 cut(s)	165, 469, 732, 1187, 1596, 3372, 3542, 3725, 4096
BstFNI	CGCG	2 cut(s)	98, 3261
BstH2I	RGCGCY	2 cut(s)	1771, 3274
BstHHI	GCGC	4 cut(s)	98, 325, 1770, 3273
BstMAI	GTCTC	9 cut(s)	121, 360, 1254, 1689, 2251, 3476, 3560, 3601, 4135
BstNI	CCWGG	8 cut(s)	17, 606, 663, 1772, 1830, 2181, 2883, 3717
BstNSI	RCATGY	3 cut(s)	2796, 3127, 3871
BstPAI	GACNNNNGTC	1 cut(s)	1376
BstPI	GGTNACC	1 cut(s)	1106
BstSFI	CTRYAG	6 cut(s)	108, 453, 505, 1367, 2007, 4233
BstSLI	GKGCMC	3 cut(s)	1342, 2311, 4081
BstUI	CGCG	2 cut(s)	98, 3261
BstV1I	GCAGC	8 cut(s)	631, 1120, 1447, 2170, 2965, 3242, 3383, 4247
BstV2I	GAAGAC	2 cut(s)	1973, 2112
BstX2I	RGATCY	7 cut(s)	402, 512, 1003, 3082, 3290, 3734, 3955
BstYI	RGATCY	7 cut(s)	402, 512, 1003, 3082, 3290, 3734, 3955
Bsu15I	ATCGAT	1 cut(s)	3338
BsuI	GTATCC	2 cut(s)	784, 1768
BsuTUI	ATCGAT	1 cut(s)	3338
BtgI	CCRYGG	1 cut(s)	866
BtsCI	GGATG	9 cut(s)	165, 469, 732, 1187, 1596, 3372, 3542, 3725, 4096
BtsIMutI	CAGTG	9 cut(s)	297, 498, 541, 812, 1470, 1611, 1679, 2936, 4159
BveI	ACCTGC	1 cut(s)	1669
Cac8I	GCNNGC	7 cut(s)	231, 693, 1839, 2653, 3259, 3444, 3869
CaiI	CAGNNNCTG	1 cut(s)	4010
CciI	TCATGA	4 cut(s)	381, 1165, 2437, 3474
CfoI	GCGC	4 cut(s)	98, 325, 1770, 3273
Cfr10I	RCCGGY	1 cut(s)	1837
Cfr13I	GGNCC	4 cut(s)	959, 3009, 3198, 3256
ClaI	ATCGAT	1 cut(s)	3338
DraI	TTTAAA	1 cut(s)	10
DraIII	CACNNNGTG	2 cut(s)	93, 1263
DrdI	GACNNNNNNGTC	1 cut(s)	3615
DseDI	GACNNNNNNGTC	1 cut(s)	3615
EaeI	YGGCCR	3 cut(s)	39, 1839, 4369
Eam1104I	CTCTTC	4 cut(s)	1257, 1788, 2526, 2538
EarI	CTCTTC	4 cut(s)	1257, 1788, 2526, 2538
EciI	GGCGGA	1 cut(s)	1898
Ecl136II	GAGCTC	1 cut(s)	3023
Eco130I	CCWWGG	4 cut(s)	866, 895, 1509, 3052
Eco24I	GRGCYC	1 cut(s)	3025
Eco31I	GGTCTC	3 cut(s)	3476, 3560, 4135
Eco32I	GATATC	1 cut(s)	2129
Eco47I	GGWCC	1 cut(s)	3009
Eco47III	AGCGCT	1 cut(s)	3272
Eco53kI	GAGCTC	1 cut(s)	3023
Eco57I	CTGAAG	5 cut(s)	1217, 1245, 1551, 1812, 3660
Eco72I	CACGTG	1 cut(s)	2835
Eco88I	CYCGRG	1 cut(s)	4185
Eco91I	GGTNACC	1 cut(s)	1106
EcoICRI	GAGCTC	1 cut(s)	3023
EcoNI	CCTNNNNNAGG	1 cut(s)	4061
EcoO65I	GGTNACC	1 cut(s)	1106
EcoRI	GAATTC	2 cut(s)	564, 4105
EcoRII	CCWGG	8 cut(s)	15, 604, 661, 1770, 1828, 2179, 2881, 3715
EcoRV	GATATC	1 cut(s)	2129
EcoT14I	CCWWGG	4 cut(s)	866, 895, 1509, 3052
EcoT22I	ATGCAT	3 cut(s)	1489, 2351, 2758
EcoT38I	GRGCYC	1 cut(s)	3025
ErhI	CCWWGG	4 cut(s)	866, 895, 1509, 3052
FalI	AAGNNNNNCTT	2 cut(s)	164, 196
FauI	CCCGC	2 cut(s)	3266, 3642
FauNDI	CATATG	1 cut(s)	649
FbaI	TGATCA	3 cut(s)	276, 2569, 2590
FblI	GTMKAC	1 cut(s)	2265
FokI	GGATG	9 cut(s)	172, 476, 739, 1174, 1583, 3379, 3529, 3732, 4103
FriOI	GRGCYC	1 cut(s)	3025
FspBI	CTAG	7 cut(s)	746, 891, 1991, 2256, 2376, 2432, 2967
GlaI	GCGC	4 cut(s)	97, 324, 1769, 3272
GsuI	CTGGAG	4 cut(s)	684, 1793, 3699, 3768
HaeII	RGCGCY	2 cut(s)	1771, 3274
HapII	CCGG	4 cut(s)	35, 1191, 1838, 4372
HhaI	GCGC	4 cut(s)	98, 325, 1770, 3273
Hin6I	GCGC	4 cut(s)	96, 323, 1768, 3271
HinP1I	GCGC	4 cut(s)	96, 323, 1768, 3271
HincII	GTYRAC	2 cut(s)	1899, 2620
HindII	GTYRAC	2 cut(s)	1899, 2620
HpaII	CCGG	4 cut(s)	35, 1191, 1838, 4372
HphI	GGTGA	7 cut(s)	1970, 2198, 2216, 2461, 2944, 3277, 3430
HpyCH4IV	ACGT	5 cut(s)	1420, 1755, 1895, 2086, 2834
HpySE526I	ACGT	5 cut(s)	1420, 1755, 1895, 2086, 2834
HspAI	GCGC	4 cut(s)	96, 323, 1768, 3271
Kpn2I	TCCGGA	1 cut(s)	1190
KroI	GCCGGC	1 cut(s)	1837
KroNI	GCCGGC	1 cut(s)	1839
Ksp22I	TGATCA	3 cut(s)	276, 2569, 2590
LguI	GCTCTTC	1 cut(s)	1788
LmnI	GCTCC	7 cut(s)	1568, 1929, 1996, 2473, 3028, 3115, 3688
Lsp1109I	GCAGC	8 cut(s)	631, 1120, 1447, 2170, 2965, 3242, 3383, 4247
MaeI	CTAG	7 cut(s)	746, 891, 1991, 2256, 2376, 2432, 2967
MaeII	ACGT	5 cut(s)	1420, 1755, 1895, 2086, 2834
MbiI	CCGCTC	1 cut(s)	3649
MfeI	CAATTG	3 cut(s)	633, 2139, 2586
MflI	RGATCY	7 cut(s)	402, 512, 1003, 3082, 3290, 3734, 3955
MhlI	GDGCHC	7 cut(s)	371, 1342, 2311, 3025, 3185, 4081, 4192
MlsI	TGGCCA	1 cut(s)	41
MluNI	TGGCCA	1 cut(s)	41
MlyI	GAGTC	8 cut(s)	113, 2126, 2253, 2388, 3272, 3942, 4145, 4186
MmeI	TCCRAC	4 cut(s)	2505, 3811, 3820, 4138
Mox20I	TGGCCA	1 cut(s)	41
Mph1103I	ATGCAT	3 cut(s)	1489, 2351, 2758
MroI	TCCGGA	1 cut(s)	1190
MroNI	GCCGGC	1 cut(s)	1837
MroXI	GAANNNNTTC	4 cut(s)	500, 657, 1230, 1859
MscI	TGGCCA	1 cut(s)	41
MslI	CAYNNNNRTG	2 cut(s)	3416, 4047
Msp20I	TGGCCA	1 cut(s)	41
MspA1I	CMGCKG	2 cut(s)	4165, 4238
MspI	CCGG	4 cut(s)	35, 1191, 1838, 4372
MunI	CAATTG	3 cut(s)	633, 2139, 2586
Mva1269I	GAATGC	2 cut(s)	76, 2758
MvaI	CCWGG	8 cut(s)	17, 606, 663, 1772, 1830, 2181, 2883, 3717
MvnI	CGCG	2 cut(s)	98, 3261
NaeI	GCCGGC	1 cut(s)	1839
NciI	CCSGG	2 cut(s)	35, 4373
NcoI	CCATGG	1 cut(s)	866
NdeI	CATATG	1 cut(s)	649
NgoMIV	GCCGGC	1 cut(s)	1837
NlaIV	GGNNCC	7 cut(s)	597, 960, 1005, 3010, 3111, 3736, 3990
NmeAIII	GCCGAG	2 cut(s)	283, 4150
NmuCI	GTSAC	5 cut(s)	1609, 2087, 2146, 2932, 4343
NsiI	ATGCAT	3 cut(s)	1489, 2351, 2758
NspI	RCATGY	3 cut(s)	2796, 3127, 3871
NspV	TTCGAA	1 cut(s)	3886
OliI	CACNNNNGTG	1 cut(s)	3416
PaeI	GCATGC	1 cut(s)	3871
PaeR7I	CTCGAG	1 cut(s)	4185
PagI	TCATGA	4 cut(s)	381, 1165, 2437, 3474
PaqCI	CACCTGC	1 cut(s)	1669
PciI	ACATGT	1 cut(s)	3123
PciSI	GCTCTTC	1 cut(s)	1788
PctI	GAATGC	2 cut(s)	76, 2758
PdiI	GCCGGC	1 cut(s)	1839
PdmI	GAANNNNTTC	4 cut(s)	500, 657, 1230, 1859
Pfl23II	CGTACG	1 cut(s)	2083
PflFI	GACNNNGTC	1 cut(s)	3827
PflMI	CCANNNNNTGG	2 cut(s)	605, 1315
PfoI	TCCNGGA	3 cut(s)	661, 1828, 3715
PleI	GAGTC	8 cut(s)	112, 2125, 2252, 2387, 3272, 3942, 4144, 4185
PmaCI	CACGTG	1 cut(s)	2835
PmlI	CACGTG	1 cut(s)	2835
PpsI	GAGTC	8 cut(s)	112, 2125, 2252, 2387, 3272, 3942, 4144, 4185
Ppu21I	YACGTR	2 cut(s)	2087, 2835
PscI	ACATGT	1 cut(s)	3123
PshAI	GACNNNNGTC	1 cut(s)	1376
PshBI	ATTAAT	1 cut(s)	3378
Psp124BI	GAGCTC	1 cut(s)	3025
Psp6I	CCWGG	8 cut(s)	15, 604, 661, 1770, 1828, 2179, 2881, 3715
PspCI	CACGTG	1 cut(s)	2835
PspEI	GGTNACC	1 cut(s)	1106
PspGI	CCWGG	8 cut(s)	15, 604, 661, 1770, 1828, 2179, 2881, 3715
PspLI	CGTACG	1 cut(s)	2083
PspN4I	GGNNCC	7 cut(s)	597, 960, 1005, 3010, 3111, 3736, 3990
PspPI	GGNCC	4 cut(s)	959, 3009, 3198, 3256
PspXI	VCTCGAGB	1 cut(s)	4185
PstI	CTGCAG	1 cut(s)	4237
PstNI	CAGNNNCTG	1 cut(s)	4010
PsuI	RGATCY	7 cut(s)	402, 512, 1003, 3082, 3290, 3734, 3955
PsyI	GACNNNGTC	1 cut(s)	3827
PvuII	CAGCTG	1 cut(s)	4238
RseI	CAYNNNNRTG	2 cut(s)	3416, 4047
SacI	GAGCTC	1 cut(s)	3025
SapI	GCTCTTC	1 cut(s)	1788
Sau96I	GGNCC	4 cut(s)	959, 3009, 3198, 3256
ScaI	AGTACT	1 cut(s)	1954
SchI	GAGTC	8 cut(s)	113, 2126, 2253, 2388, 3272, 3942, 4145, 4186
SduI	GDGCHC	7 cut(s)	371, 1342, 2311, 3025, 3185, 4081, 4192
SfcI	CTRYAG	6 cut(s)	108, 453, 505, 1367, 2007, 4233
Sfr274I	CTCGAG	1 cut(s)	4185
SfuI	TTCGAA	1 cut(s)	3886
SinI	GGWCC	1 cut(s)	3009
SlaI	CTCGAG	1 cut(s)	4185
SmiMI	CAYNNNNRTG	2 cut(s)	3416, 4047
SmlI	CTYRAG	2 cut(s)	2302, 4185
SmoI	CTYRAG	2 cut(s)	2302, 4185
SphI	GCATGC	1 cut(s)	3871
SsiI	CCGC	8 cut(s)	98, 962, 1742, 1883, 3259, 3649, 3706, 4165
SspI	AATATT	4 cut(s)	717, 1041, 2221, 3580
SspMI	CTAG	7 cut(s)	746, 891, 1991, 2256, 2376, 2432, 2967
SstI	GAGCTC	1 cut(s)	3025
StyI	CCWWGG	4 cut(s)	866, 895, 1509, 3052
TaiI	ACGT	5 cut(s)	1423, 1758, 1898, 2089, 2837
TaqI	TCGA	9 cut(s)	421, 1174, 1702, 2329, 3338, 3886, 3951, 4026, 4186
TaqII	GACCGA	1 cut(s)	4362
TatI	WGTACW	7 cut(s)	216, 251, 528, 1539, 1952, 3601, 4298
TauI	GCSGC	2 cut(s)	964, 4168
TscAI	CASTG	9 cut(s)	297, 498, 541, 819, 1477, 1618, 1686, 2943, 4159
TseFI	GTSAC	5 cut(s)	1609, 2087, 2146, 2932, 4343
TseI	GCWGC	8 cut(s)	644, 1133, 1460, 2158, 2978, 3230, 3371, 4235
Tsp45I	GTSAC	5 cut(s)	1609, 2087, 2146, 2932, 4343
TspGWI	ACGGA	5 cut(s)	81, 782, 1750, 3440, 3976
TspRI	CASTG	9 cut(s)	297, 498, 541, 819, 1477, 1618, 1686, 2943, 4159
Tth111I	GACNNNGTC	1 cut(s)	3827
Van91I	CCANNNNNTGG	2 cut(s)	605, 1315
VneI	GTGCAC	1 cut(s)	1338
VpaK11BI	GGWCC	1 cut(s)	3009
VspI	ATTAAT	1 cut(s)	3378
XagI	CCTNNNNNAGG	1 cut(s)	4061
XapI	RAATTY	9 cut(s)	285, 298, 564, 589, 1452, 3912, 4105, 4147, 4286
XceI	RCATGY	3 cut(s)	2796, 3127, 3871
XcmI	CCANNNNNNNNNTGG	2 cut(s)	127, 2061
XhoI	CTCGAG	1 cut(s)	4185
XmiI	GTMKAC	1 cut(s)	2265
XmnI	GAANNNNTTC	4 cut(s)	500, 657, 1230, 1859
XspI	CTAG	7 cut(s)	746, 891, 1991, 2256, 2376, 2432, 2967
ZrmI	AGTACT	1 cut(s)	1954
Zsp2I	ATGCAT	3 cut(s)	1489, 2351, 2758

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.