Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000183.1

Orthogroup ID

OG0006629

Physical Location & Seq

Genomic Coordinates Reverse (-)

194463 .. 196767

Gene Structure 2305 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

atggaaggcttctaccaagagtctggtagagctggtcgtgatcaattaccctccagaagcctattgtattatggaattgaagattccaagagaatgaaatttattctaagcaatgctgagaacaagaaatcaaaggcctcaaactcacaagaagagttgtcaaaaaaatccctgaccgactttcaacagatggttgagtattgtgagggctctggatgccggaggaaaaagatccttgagaactttggtgaaaaggtacctgtaacactgtgtagcaaaacatgtgatgcctgcaaacatccaaacctcgtagccaaatacttggaggagctcgcaactgcttgtatcgtccggcagaaagctggttcatctcaaatttttgtgggcagctcctcaaataaagttaatgaagatcagtcctctgaattctggaaccgtgatgatgaagcaagttgttctgaggaagacatatctgattctgatgatgatgttgcggaccttgtagctgtcaagagccttaccagatcaaagttgatcgatgaaaaattggaagccttgcagcgtgcagaagaaaaatattaccagaataaatctgataagcagacggataaacttaacaagaatgctatatctgatacactgagagaagcaagcaagcagagattagaaaatgctgtaaagcaggctcagcagcgacttggaaacttaaagattgaggtggaaaaatcggcatctttccttgaaaatgaatgttacaaaaaatatgggaaaactggaaaatcattctattattctcaagtcgcaagcacagtgaggtggttatcaaccgtaaattctaccgacttaaccgatcgtctctgccccataaccagttccccgtcagagaatactccgctcaaaacggcaccttctgcatcacaatcgccattggtggagacaggaccttttgcaacgccatcacctttggtggacagagcaacagaaatcaccagaaatgacttacatgagagtgttagactggaagcttctgtagctctgtcaccaacggaaagtgattccccaagtacaattttgccagcaattccatccttctcagagtttatcaacagcaaaaaggtgacagacaacagatcaagtgcatcggaaaagcaatcccctaatggggttaagaagaatccagagaagaaaatgaggttacgatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0000733 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032392 GO:0032508 GO:0033554 GO:0034641 GO:0036310 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0097617 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03440 ko03460 map03440 map03460

Pfam Domains

Protein Families

DEAD Helicase_C RecQ_Zn_bind

Protein Analysis

400

Amino Acids

44.59

Weight (kDa)

7.44

Isoelectric Point (pI)

63.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RecQ_Zn_bind	PF16124	27 - 99	3.1e-13	RecQ zinc-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006629)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35740 AT4G35740
fragaria_vesca	FvH4_1g08920 FvH4_1g08920
malus_domestica	MD02G1094600.v1.1
prunus_persica	Prupe.7G196400_v2.0.a1 Prupe.7G196400_v2.0.a1 Prupe.7G196400_v2.0.a1
pyrus_communis	pycom02g07480
rosa_chinensis	RchiOBHm_Chr2g0095381
rosa_laevigata	RLG00000016560
rosa_multiflora	Rmu_co8503843.1_g000001 Rmu_ssc0000183.1_g000039
rosa_roxburghii	Rroxscaffold_2G00146420
rosa_rugosa	Rorug02G0050200 Rorug02G0050200 Rorug02G0050300
rosa_samantha	Rh2AG098400 Rh2AG098500 Rh2BG099600 Rh2BG099700 Rh2CG101600 Rh2CG101700 Rh2DG099200 Rh2DG099300
rosa_wichuraiana	Rw2G007430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	256
AccB1I	GGYRCC	2 cut(s)	256, 904
AccBSI	CCGCTC	1 cut(s)	895
AciI	CCGC	2 cut(s)	494, 893
AclWI	GGATC	1 cut(s)	226
AcsI	RAATTY	4 cut(s)	98, 375, 425, 832
AfaI	GTAC	2 cut(s)	258, 1066
AfiI	CCNNNNNNNGG	2 cut(s)	1161, 1162
AflIII	ACRYGT	1 cut(s)	281
AgsI	TTSAA	3 cut(s)	80, 185, 743
AluBI	AGCT	7 cut(s)	32, 331, 362, 390, 506, 1025, 1034
AluI	AGCT	7 cut(s)	32, 331, 362, 390, 506, 1025, 1034
Alw21I	GWGCWC	1 cut(s)	333
Alw26I	GTCTC	2 cut(s)	860, 929
AlwI	GGATC	1 cut(s)	226
AoxI	GGCC	1 cut(s)	135
ApeKI	GCWGC	3 cut(s)	387, 559, 691
ApoI	RAATTY	4 cut(s)	98, 375, 425, 832
Asp718I	GGTACC	1 cut(s)	256
AspS9I	GGNCC	2 cut(s)	496, 941
AsuHPI	GGTGA	5 cut(s)	260, 951, 979, 1032, 1129
AvaII	GGWCC	2 cut(s)	496, 941
BanI	GGYRCC	2 cut(s)	256, 904
BanII	GRGCYC	2 cut(s)	212, 333
BbsI	GAAGAC	1 cut(s)	471
Bbv12I	GWGCWC	1 cut(s)	333
BbvI	GCAGC	3 cut(s)	399, 571, 703
BccI	CCATC	3 cut(s)	184, 964, 1093
BceAI	ACGGC	1 cut(s)	918
BcgI	CGANNNNNNTGC	2 cut(s)	903, 937
BclI	TGATCA	1 cut(s)	40
BcoDI	GTCTC	2 cut(s)	860, 929
BfmI	CTRYAG	1 cut(s)	1029
BisI	GCNGC	3 cut(s)	388, 560, 692
BlpI	GCTNAGC	1 cut(s)	687
BlsI	GCNGC	3 cut(s)	389, 561, 693
Bme18I	GGWCC	2 cut(s)	496, 941
BmgT120I	GGNCC	2 cut(s)	496, 941
BmiI	GGNNCC	3 cut(s)	258, 434, 906
BmsI	GCATC	5 cut(s)	206, 277, 740, 923, 1148
BpiI	GAAGAC	1 cut(s)	471
BpmI	CTGGAG	1 cut(s)	37
Bpu1102I	GCTNAGC	1 cut(s)	687
BpuEI	CTTGAG	2 cut(s)	257, 780
Bsa29I	ATCGAT	1 cut(s)	537
Bsc4I	CCNNNNNNNGG	2 cut(s)	1161, 1162
Bse1I	ACTGG	3 cut(s)	778, 870, 1023
Bse3DI	GCAATG	1 cut(s)	118
BseCI	ATCGAT	1 cut(s)	537
BseGI	GGATG	3 cut(s)	221, 298, 1085
BseLI	CCNNNNNNNGG	2 cut(s)	1161, 1162
BseMI	GCAATG	1 cut(s)	118
BseMII	CTCAG	5 cut(s)	108, 450, 632, 701, 1107
BseNI	ACTGG	3 cut(s)	778, 870, 1023
BseRI	GAGGAG	2 cut(s)	341, 382
BseXI	GCAGC	3 cut(s)	399, 571, 703
BsgI	GTGCAG	1 cut(s)	585
Bsh1285I	CGRYCG	1 cut(s)	853
BshFI	GGCC	1 cut(s)	137
BshNI	GGYRCC	2 cut(s)	256, 904
BshVI	ATCGAT	1 cut(s)	537
BsiEI	CGRYCG	1 cut(s)	853
BsiHKAI	GWGCWC	1 cut(s)	333
BsiSI	CCGG	2 cut(s)	220, 352
BslI	CCNNNNNNNGG	2 cut(s)	1161, 1162
BsmAI	GTCTC	2 cut(s)	860, 929
BsmBI	CGTCTC	1 cut(s)	860
BsmI	GAATGC	1 cut(s)	628
BsnI	GGCC	1 cut(s)	137
Bsp1286I	GDGCHC	2 cut(s)	212, 333
Bsp143I	GATC	7 cut(s)	40, 231, 412, 524, 534, 850, 1130
Bsp1720I	GCTNAGC	1 cut(s)	687
BspACI	CCGC	2 cut(s)	494, 893
BspANI	GGCC	1 cut(s)	137
BspCNI	CTCAG	5 cut(s)	109, 451, 633, 700, 1106
BspDI	ATCGAT	1 cut(s)	537
BspLI	GGNNCC	3 cut(s)	258, 434, 906
BspPI	GGATC	1 cut(s)	226
BspT107I	GGYRCC	2 cut(s)	256, 904
BsrBI	CCGCTC	1 cut(s)	895
BsrDI	GCAATG	1 cut(s)	118
BsrI	ACTGG	3 cut(s)	778, 870, 1023
BssMI	GATC	7 cut(s)	40, 231, 412, 524, 534, 850, 1130
Bst4CI	ACNGT	4 cut(s)	270, 437, 811, 829
Bst6I	CTCTTC	1 cut(s)	147
BstAPI	GCANNNNNTGC	1 cut(s)	911
BstC8I	GCNNGC	8 cut(s)	292, 333, 564, 652, 656, 684, 805, 1077
BstDEI	CTNAG	6 cut(s)	107, 117, 459, 641, 687, 1093
BstF5I	GGATG	3 cut(s)	221, 298, 1085
BstKTI	GATC	7 cut(s)	43, 234, 415, 527, 537, 853, 1133
BstMAI	GTCTC	2 cut(s)	860, 929
BstMBI	GATC	7 cut(s)	40, 231, 412, 524, 534, 850, 1130
BstMCI	CGRYCG	1 cut(s)	853
BstMWI	GCNNNNNNNGC	4 cut(s)	216, 688, 911, 1031
BstNSI	RCATGY	1 cut(s)	285
BstSFI	CTRYAG	1 cut(s)	1029
BstV1I	GCAGC	3 cut(s)	399, 571, 703
BstV2I	GAAGAC	1 cut(s)	471
BstX2I	RGATCY	1 cut(s)	231
BstXI	CCANNNNNNTGG	2 cut(s)	23, 322
BstYI	RGATCY	1 cut(s)	231
Bsu15I	ATCGAT	1 cut(s)	537
BsuRI	GGCC	1 cut(s)	137
BsuTUI	ATCGAT	1 cut(s)	537
BtsCI	GGATG	3 cut(s)	221, 298, 1085
BtsIMutI	CAGTG	3 cut(s)	266, 638, 816
Cac8I	GCNNGC	8 cut(s)	292, 333, 564, 652, 656, 684, 805, 1077
Cfr13I	GGNCC	2 cut(s)	496, 941
ClaI	ATCGAT	1 cut(s)	537
Csp6I	GTAC	2 cut(s)	257, 1065
CviAII	CATG	2 cut(s)	282, 1004
CviQI	GTAC	2 cut(s)	257, 1065
DdeI	CTNAG	6 cut(s)	107, 117, 459, 641, 687, 1093
DpnI	GATC	7 cut(s)	42, 233, 414, 526, 536, 852, 1132
DpnII	GATC	7 cut(s)	40, 231, 412, 524, 534, 850, 1130
Eam1104I	CTCTTC	1 cut(s)	147
EarI	CTCTTC	1 cut(s)	147
Ecl136II	GAGCTC	1 cut(s)	331
Eco147I	AGGCCT	1 cut(s)	137
Eco24I	GRGCYC	2 cut(s)	212, 333
Eco47I	GGWCC	2 cut(s)	496, 941
Eco53kI	GAGCTC	1 cut(s)	331
EcoICRI	GAGCTC	1 cut(s)	331
EcoO109I	RGGNCCY	1 cut(s)	941
EcoRI	GAATTC	1 cut(s)	425
EcoT38I	GRGCYC	2 cut(s)	212, 333
Esp3I	CGTCTC	1 cut(s)	860
FaeI	CATG	2 cut(s)	285, 1007
FaiI	YATR	7 cut(s)	72, 283, 470, 629, 765, 866, 1005
FatI	CATG	2 cut(s)	281, 1003
FbaI	TGATCA	1 cut(s)	40
Fnu4HI	GCNGC	3 cut(s)	388, 560, 692
FokI	GGATG	3 cut(s)	228, 285, 1072
FriOI	GRGCYC	2 cut(s)	212, 333
Fsp4HI	GCNGC	3 cut(s)	388, 560, 692
GluI	GCNGC	3 cut(s)	388, 560, 692
GsuI	CTGGAG	1 cut(s)	37
HaeIII	GGCC	1 cut(s)	137
HapII	CCGG	2 cut(s)	220, 352
Hin1II	CATG	2 cut(s)	285, 1007
HindIII	AAGCTT	1 cut(s)	1023
HinfI	GANTC	5 cut(s)	20, 83, 476, 1055, 1174
HpaII	CCGG	2 cut(s)	220, 352
HphI	GGTGA	5 cut(s)	260, 951, 979, 1032, 1129
Hpy166II	GTNNAC	1 cut(s)	970
Hpy188I	TCNGA	9 cut(s)	424, 460, 475, 481, 595, 634, 883, 1096, 1144
Hpy188III	TCNNGA	6 cut(s)	38, 54, 213, 430, 511, 1178
Hpy8I	GTNNAC	1 cut(s)	970
HpyAV	CCTTC	2 cut(s)	918, 1099
HpyCH4III	ACNGT	4 cut(s)	270, 437, 811, 829
HpyCH4V	TGCA	6 cut(s)	294, 559, 566, 914, 950, 1139
HpyF10VI	GCNNNNNNNGC	4 cut(s)	216, 688, 911, 1031
HpyF3I	CTNAG	6 cut(s)	107, 117, 459, 641, 687, 1093
Hsp92II	CATG	2 cut(s)	285, 1007
KpnI	GGTACC	1 cut(s)	260
Ksp22I	TGATCA	1 cut(s)	40
Kzo9I	GATC	7 cut(s)	40, 231, 412, 524, 534, 850, 1130
LmnI	GCTCC	2 cut(s)	328, 395
Lsp1109I	GCAGC	3 cut(s)	399, 571, 703
LweI	GCATC	5 cut(s)	206, 277, 740, 923, 1148
MaeIII	GTNAC	5 cut(s)	262, 752, 1038, 1117, 1194
MalI	GATC	7 cut(s)	42, 233, 414, 526, 536, 852, 1132
MbiI	CCGCTC	1 cut(s)	895
MboI	GATC	7 cut(s)	40, 231, 412, 524, 534, 850, 1130
MboII	GAAGA	7 cut(s)	92, 164, 422, 476, 581, 1183, 1195
MflI	RGATCY	1 cut(s)	231
MhlI	GDGCHC	2 cut(s)	212, 333
MluCI	AATT	9 cut(s)	44, 75, 98, 375, 425, 545, 832, 1068, 1080
MlyI	GAGTC	1 cut(s)	29
MseI	TTAA	5 cut(s)	405, 615, 707, 845, 1167
MslI	CAYNNNNRTG	1 cut(s)	1008
MspI	CCGG	2 cut(s)	220, 352
Mva1269I	GAATGC	1 cut(s)	628
MwoI	GCNNNNNNNGC	4 cut(s)	216, 688, 911, 1031
NdeII	GATC	7 cut(s)	40, 231, 412, 524, 534, 850, 1130
NlaIII	CATG	2 cut(s)	285, 1007
NlaIV	GGNNCC	3 cut(s)	258, 434, 906
NmuCI	GTSAC	2 cut(s)	1038, 1117
NspI	RCATGY	1 cut(s)	285
PceI	AGGCCT	1 cut(s)	137
PciI	ACATGT	1 cut(s)	281
PctI	GAATGC	1 cut(s)	628
PfeI	GAWTC	4 cut(s)	83, 476, 1055, 1174
PkrI	GCNGC	3 cut(s)	389, 561, 693
Ple19I	CGATCG	1 cut(s)	853
PleI	GAGTC	1 cut(s)	28
PpsI	GAGTC	1 cut(s)	28
PpuMI	RGGWCCY	1 cut(s)	941
PscI	ACATGT	1 cut(s)	281
Psp124BI	GAGCTC	1 cut(s)	333
Psp5II	RGGWCCY	1 cut(s)	941
PspN4I	GGNNCC	3 cut(s)	258, 434, 906
PspPI	GGNCC	2 cut(s)	496, 941
PspPPI	RGGWCCY	1 cut(s)	941
PsuI	RGATCY	1 cut(s)	231
PvuI	CGATCG	1 cut(s)	853
RsaI	GTAC	2 cut(s)	258, 1066
RsaNI	GTAC	2 cut(s)	257, 1065
RseI	CAYNNNNRTG	1 cut(s)	1008
SacI	GAGCTC	1 cut(s)	333
SaqAI	TTAA	5 cut(s)	405, 615, 707, 845, 1167
SatI	GCNGC	3 cut(s)	388, 560, 692
Sau3AI	GATC	7 cut(s)	40, 231, 412, 524, 534, 850, 1130
Sau96I	GGNCC	2 cut(s)	496, 941
SchI	GAGTC	1 cut(s)	29
SduI	GDGCHC	2 cut(s)	212, 333
SfaNI	GCATC	5 cut(s)	206, 277, 740, 923, 1148
SfcI	CTRYAG	1 cut(s)	1029
SinI	GGWCC	2 cut(s)	496, 941
SmiMI	CAYNNNNRTG	1 cut(s)	1008
SmlI	CTYRAG	2 cut(s)	236, 795
SmoI	CTYRAG	2 cut(s)	236, 795
Sse9I	AATT	9 cut(s)	44, 75, 98, 375, 425, 545, 832, 1068, 1080
SseBI	AGGCCT	1 cut(s)	137
SsiI	CCGC	2 cut(s)	494, 893
SspI	AATATT	1 cut(s)	578
SstI	GAGCTC	1 cut(s)	333
StuI	AGGCCT	1 cut(s)	137
TaaI	ACNGT	4 cut(s)	270, 437, 811, 829
TaqI	TCGA	1 cut(s)	537
TaqII	GACCGA	1 cut(s)	191
TasI	AATT	9 cut(s)	44, 75, 98, 375, 425, 545, 832, 1068, 1080
TatI	WGTACW	1 cut(s)	1064
TfiI	GAWTC	4 cut(s)	83, 476, 1055, 1174
Tru1I	TTAA	5 cut(s)	405, 615, 707, 845, 1167
Tru9I	TTAA	5 cut(s)	405, 615, 707, 845, 1167
TscAI	CASTG	3 cut(s)	273, 645, 816
TseFI	GTSAC	2 cut(s)	1038, 1117
TseI	GCWGC	3 cut(s)	387, 559, 691
Tsp45I	GTSAC	2 cut(s)	1038, 1117
TspDTI	ATGAA	6 cut(s)	110, 357, 423, 459, 555, 762
TspGWI	ACGGA	2 cut(s)	620, 1061
TspRI	CASTG	3 cut(s)	273, 645, 816
VpaK11BI	GGWCC	2 cut(s)	496, 941
XapI	RAATTY	4 cut(s)	98, 375, 425, 832
XceI	RCATGY	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.