Rmu_ssc0000194.1_g000001

Catalyzes the isomerization of citrate to isocitrate via cis-aconitate

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000194.1
Physical Location & Seq
Forward (+)
1 .. 4513
4513 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000194.1_g000001.1.cds

Sequence Viewer

Length: 1744 bp
cttgccggctctcaatgatcctagagtcgataagctaccgtactctattaagatccttctcgagtctgcaatccgtaactgcgatgagtttcaggttaagagtaaggatgttgagaaaattattgattgggagaacagtgctcccaagcaggttgagattccattcaaacctgctagagtccttcttcaggatttcactggtgtacctgctgttgtcgatctggcttgcatgcgagatgccatgaacaatctcaagggagattctaacaagattaacccattggtaccagttgatctcgtcattgatcactcggttcaagtagatgtggcaagatcagacaatgcagtgcaggcaaacatggaatttgagttcaagagaaacaatgaacggtttgggtttctaaaatggggatcaaatgcattccataacatgctcgttgttcctcctggatcagggatcgttcatcaggttaatttagaataccttggacgggtggtgttcaacacagatggcttgctatatcctgatagtgttgttgggacagattcacacaccacaatgattgacggactaggtgttgctggttggggagtgggtgggatcgaagcagaagctgcgatgcttggccagcccatgagcatggtcctccctggtgtggttgggttcaagttgttaggaaaactgagagatggtgtgacagctactgatttggttctgacagtaactcaaattctgaggaagcatggagttgttgggaagtttgtggagttttatggggaaggcatgagtgaattgtcattagctgaccgtgctactattgccaacatgtctcctgagtatggtgcaaccatgggcttctttcctgtcgatcatgtcacgctgcaatatctaaagctaacaggcagaactgctgacactgttgctatgatagaatcttatttacgggctaataagatgttcgtggactacagtgagccccagatagagagagtatactctgctaatcttgagctaaaacttgaggatgtggagccttgcatatcagggccaaagaggccacatgatcgtgttcctctgaaagaaatgaaagtggattggcatgcatgccttgacaatagagttggatttaagggttttgctgtgccaaaggaatctcaaaagaaagtcgtagagttctcatttcatggaatccctgcacagcttaggcatggagatgtcgtaattgcagctattaccagttgcacaaacacctcaaatcctagtgtaatgctaggagctgccttggttgcaaagaaagcttgtgaattaggattggaggtcaagccatggattaagactagtcttgcgccaggctctggggttgtaaccaaatacttggaaaagagtgggttgcagaagtatctgaatcagctaggatttaatatcgttgggtatggatgcaccacatgcattggaaattcaggagatattgatgaagcagtggcatcagctattacggaaaatgatattgtagcttcagccgtattatctggaaataggaattttgagggccgtgtacatcctttaacacgggctaattatcttgcttctcctccccttgtggttgcttatgcacttgctggcacggtggatattgattttgacactgaaaatataggggtgggaaaagatggaaagaagatatttttcagggatatatggccatctaatcaagaagtagcagaggtgagattgctttgctga

Protein Analysis

580

Amino Acids

63.27

Weight (kDa)

5.59

Isoelectric Point (pI)

31.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 140, 179, 215
Acc65I GGTACC 1 cut(s) 284
AccB1I GGYRCC 1 cut(s) 284
AccB7I CCANNNNNTGG 1 cut(s) 1356
AccI GTMKAC 1 cut(s) 994
AclWI GGATC 6 cut(s) 12, 47, 419, 458, 465, 609
AcoI YGGCCR 2 cut(s) 626, 1701
AcsI RAATTY 4 cut(s) 363, 730, 1457, 1541
AcuI CTGAAG 2 cut(s) 171, 1501
AfaI GTAC 4 cut(s) 42, 205, 286, 1558
AfiI CCNNNNNNNGG 6 cut(s) 188, 453, 491, 656, 840, 1356
AflIII ACRYGT 1 cut(s) 826
AgsI TTSAA 5 cut(s) 167, 318, 374, 503, 668
AhlI ACTAGT 1 cut(s) 1338
AjnI CCWGG 3 cut(s) 446, 650, 1349
AloI GAACNNNNNNTCC 2 cut(s) 354, 386
Alw21I GWGCWC 1 cut(s) 143
Alw26I GTCTC 1 cut(s) 835
AlwI GGATC 6 cut(s) 12, 47, 419, 458, 465, 609
AlwNI CAGNNNCTG 3 cut(s) 615, 705, 1356
Ama87I CYCGRG 1 cut(s) 60
AoxI GGCC 5 cut(s) 626, 1047, 1056, 1550, 1701
ApeKI GCWGC 4 cut(s) 615, 881, 1227, 1278
ApoI RAATTY 4 cut(s) 363, 730, 1457, 1541
Asp718I GGTACC 1 cut(s) 284
AspLEI GCGC 1 cut(s) 1349
AspS9I GGNCC 3 cut(s) 644, 1047, 1550
AsuHPI GGTGA 1 cut(s) 1739
AvaI CYCGRG 1 cut(s) 60
AvaII GGWCC 1 cut(s) 644
BaeI ACNNNNGTAYC 2 cut(s) 187, 220
BalI TGGCCA 2 cut(s) 628, 1703
BanI GGYRCC 1 cut(s) 284
BanII GRGCYC 1 cut(s) 979
Bbv12I GWGCWC 1 cut(s) 143
BbvI GCAGC 4 cut(s) 602, 868, 1239, 1265
BccI CCATC 4 cut(s) 504, 684, 1665, 1712
BceAI ACGGC 2 cut(s) 1506, 1537
BciT130I CCWGG 3 cut(s) 448, 652, 1351
BclI TGATCA 1 cut(s) 305
BcoDI GTCTC 1 cut(s) 835
BcuI ACTAGT 1 cut(s) 1338
BfaI CTAG 7 cut(s) 22, 175, 573, 1261, 1272, 1339, 1413
BfmI CTRYAG 1 cut(s) 968
BfuAI ACCTGC 3 cut(s) 140, 179, 215
BglI GCCNNNNNGGC 1 cut(s) 1055
BisI GCNGC 4 cut(s) 616, 882, 1228, 1279
BlsI GCNGC 4 cut(s) 617, 883, 1229, 1280
Bme1390I CCNGG 3 cut(s) 448, 652, 1351
Bme18I GGWCC 1 cut(s) 644
BmeT110I CYCGRG 1 cut(s) 60
BmgT120I GGNCC 3 cut(s) 644, 1047, 1550
BmiI GGNNCC 2 cut(s) 286, 1033
BmrFI CCNGG 3 cut(s) 448, 652, 1351
BmsI GCATC 4 cut(s) 227, 610, 1428, 1494
Bpu10I CCTNAGC 1 cut(s) 1203
BpuEI CTTGAG 3 cut(s) 237, 1029, 1041
BsaJI CCNNGG 5 cut(s) 485, 650, 850, 1282, 1326
BsaXI ACNNNNNCTCC 2 cut(s) 1204, 1234
Bsc4I CCNNNNNNNGG 6 cut(s) 188, 453, 491, 656, 840, 1356
Bse118I RCCGGY 1 cut(s) 5
Bse1I ACTGG 3 cut(s) 203, 288, 1237
BseBI CCWGG 3 cut(s) 448, 652, 1351
BseDI CCNNGG 5 cut(s) 485, 650, 850, 1282, 1326
BseGI GGATG 4 cut(s) 113, 1031, 1443, 1559
BseLI CCNNNNNNNGG 6 cut(s) 188, 453, 491, 656, 840, 1356
BseMII CTCAG 3 cut(s) 675, 726, 826
BseNI ACTGG 3 cut(s) 203, 288, 1237
BseRI GAGGAG 1 cut(s) 1582
BseXI GCAGC 4 cut(s) 602, 868, 1239, 1265
BsgI GTGCAG 2 cut(s) 369, 1180
BshFI GGCC 5 cut(s) 628, 1049, 1058, 1552, 1703
BshNI GGYRCC 1 cut(s) 284
BsiHKAI GWGCWC 1 cut(s) 143
BsiHKCI CYCGRG 1 cut(s) 60
BsiSI CCGG 1 cut(s) 6
BslFI GGGAC 1 cut(s) 554
BslI CCNNNNNNNGG 6 cut(s) 188, 453, 491, 656, 840, 1356
BsmAI GTCTC 1 cut(s) 835
BsmFI GGGAC 1 cut(s) 554
BsmI GAATGC 1 cut(s) 420
BsnI GGCC 5 cut(s) 628, 1049, 1058, 1552, 1703
BsoBI CYCGRG 1 cut(s) 60
Bsp1286I GDGCHC 2 cut(s) 143, 979
Bsp1407I TGTACA 1 cut(s) 1556
Bsp19I CCATGG 2 cut(s) 850, 1326
BspANI GGCC 5 cut(s) 628, 1049, 1058, 1552, 1703
BspCNI CTCAG 3 cut(s) 676, 727, 827
BspLI GGNNCC 2 cut(s) 286, 1033
BspMI ACCTGC 3 cut(s) 140, 179, 215
BspPI GGATC 6 cut(s) 12, 47, 419, 458, 465, 609
BspT107I GGYRCC 1 cut(s) 284
BsrFI RCCGGY 1 cut(s) 5
BsrGI TGTACA 1 cut(s) 1556
BsrI ACTGG 3 cut(s) 203, 288, 1237
BssAI RCCGGY 1 cut(s) 5
BssECI CCNNGG 5 cut(s) 485, 650, 850, 1282, 1326
BssNAI GTATAC 1 cut(s) 995
BssT1I CCWWGG 4 cut(s) 485, 850, 1282, 1326
Bst1107I GTATAC 1 cut(s) 995
Bst2UI CCWGG 3 cut(s) 448, 652, 1351
Bst4CI ACNGT 8 cut(s) 40, 138, 391, 722, 810, 920, 972, 1628
BstAPI GCANNNNNTGC 2 cut(s) 615, 1447
BstAUI TGTACA 1 cut(s) 1556
BstC8I GCNNGC 9 cut(s) 7, 227, 231, 352, 516, 630, 1102, 1106, 1622
BstDEI CTNAG 4 cut(s) 684, 735, 835, 1203
BstDSI CCRYGG 2 cut(s) 850, 1326
BstENI CCTNNNNNAGG 2 cut(s) 186, 451
BstF5I GGATG 4 cut(s) 113, 1031, 1443, 1559
BstHHI GCGC 1 cut(s) 1349
BstMAI GTCTC 1 cut(s) 835
BstMWI GCNNNNNNNGC 9 cut(s) 351, 615, 629, 810, 819, 1055, 1287, 1296, 1447
BstNI CCWGG 3 cut(s) 448, 652, 1351
BstNSI RCATGY 6 cut(s) 233, 434, 830, 1104, 1108, 1450
BstSCI CCNGG 3 cut(s) 446, 650, 1349
BstSFI CTRYAG 1 cut(s) 968
BstV1I GCAGC 4 cut(s) 602, 868, 1239, 1265
BstX2I RGATCY 1 cut(s) 52
BstXI CCANNNNNNTGG 2 cut(s) 641, 1376
BstYI RGATCY 1 cut(s) 52
BstZ17I GTATAC 1 cut(s) 995
BsuRI GGCC 5 cut(s) 628, 1049, 1058, 1552, 1703
BtgI CCRYGG 2 cut(s) 850, 1326
BtgZI GCGATG 2 cut(s) 97, 633
BtsCI GGATG 4 cut(s) 113, 1031, 1443, 1559
BtsI GCAGTG 2 cut(s) 352, 1486
BtsIMutI CAGTG 7 cut(s) 143, 196, 352, 916, 977, 1486, 1645
BveI ACCTGC 3 cut(s) 140, 179, 215
Cac8I GCNNGC 9 cut(s) 7, 227, 231, 352, 516, 630, 1102, 1106, 1622
CaiI CAGNNNCTG 3 cut(s) 615, 705, 1356
CfoI GCGC 1 cut(s) 1349
Cfr10I RCCGGY 1 cut(s) 5
Cfr13I GGNCC 3 cut(s) 644, 1047, 1550
Csp6I GTAC 4 cut(s) 41, 204, 285, 1557
CspCI CAANNNNNGTGG 4 cut(s) 545, 580, 1433, 1468
CviQI GTAC 4 cut(s) 41, 204, 285, 1557
DdeI CTNAG 4 cut(s) 684, 735, 835, 1203
EaeI YGGCCR 2 cut(s) 626, 1701
Eco130I CCWWGG 4 cut(s) 485, 850, 1282, 1326
Eco24I GRGCYC 1 cut(s) 979
Eco47I GGWCC 1 cut(s) 644
Eco57I CTGAAG 2 cut(s) 171, 1501
Eco88I CYCGRG 1 cut(s) 60
EcoNI CCTNNNNNAGG 2 cut(s) 186, 451
EcoRII CCWGG 3 cut(s) 446, 650, 1349
EcoT14I CCWWGG 4 cut(s) 485, 850, 1282, 1326
EcoT22I ATGCAT 3 cut(s) 422, 1106, 1452
EcoT38I GRGCYC 1 cut(s) 979
ErhI CCWWGG 4 cut(s) 485, 850, 1282, 1326
FaqI GGGAC 1 cut(s) 554
FbaI TGATCA 1 cut(s) 305
FblI GTMKAC 1 cut(s) 994
Fnu4HI GCNGC 4 cut(s) 616, 882, 1228, 1279
FokI GGATG 4 cut(s) 120, 1038, 1450, 1546
FriOI GRGCYC 1 cut(s) 979
Fsp4HI GCNGC 4 cut(s) 616, 882, 1228, 1279
FspBI CTAG 7 cut(s) 22, 175, 573, 1261, 1272, 1339, 1413
GlaI GCGC 1 cut(s) 1348
GluI GCNGC 4 cut(s) 616, 882, 1228, 1279
HaeIII GGCC 5 cut(s) 628, 1049, 1058, 1552, 1703
HapII CCGG 1 cut(s) 6
HhaI GCGC 1 cut(s) 1349
Hin6I GCGC 1 cut(s) 1347
HinP1I GCGC 1 cut(s) 1347
HindIII AAGCTT 1 cut(s) 1297
HpaII CCGG 1 cut(s) 6
HphI GGTGA 1 cut(s) 1739
Hpy166II GTNNAC 4 cut(s) 204, 965, 995, 1557
Hpy188I TCNGA 5 cut(s) 338, 718, 736, 1078, 1405
Hpy188III TCNNGA 9 cut(s) 60, 189, 374, 525, 834, 1008, 1462, 1531, 1713
Hpy8I GTNNAC 4 cut(s) 204, 965, 995, 1557
HpyAV CCTTC 3 cut(s) 66, 192, 774
HpyCH4III ACNGT 8 cut(s) 40, 138, 391, 722, 810, 920, 972, 1628
HpyF10VI GCNNNNNNNGC 9 cut(s) 351, 615, 629, 810, 819, 1055, 1287, 1296, 1447
HpyF3I CTNAG 4 cut(s) 684, 735, 835, 1203
HspAI GCGC 1 cut(s) 1347
KpnI GGTACC 1 cut(s) 288
KroI GCCGGC 1 cut(s) 5
KroNI GCCGGC 1 cut(s) 7
Ksp22I TGATCA 1 cut(s) 305
LmnI GCTCC 3 cut(s) 146, 1031, 1275
Lsp1109I GCAGC 4 cut(s) 602, 868, 1239, 1265
LweI GCATC 4 cut(s) 227, 610, 1428, 1494
MaeI CTAG 7 cut(s) 22, 175, 573, 1261, 1272, 1339, 1413
MaeIII GTNAC 5 cut(s) 75, 695, 722, 875, 1364
MboII GAAGA 2 cut(s) 177, 1691
MflI RGATCY 1 cut(s) 52
MhlI GDGCHC 2 cut(s) 143, 979
MlsI TGGCCA 2 cut(s) 628, 1703
MluNI TGGCCA 2 cut(s) 628, 1703
MlyI GAGTC 3 cut(s) 34, 72, 187
MmeI TCCRAC 1 cut(s) 1103
Mox20I TGGCCA 2 cut(s) 628, 1703
Mph1103I ATGCAT 3 cut(s) 422, 1106, 1452
MroNI GCCGGC 1 cut(s) 5
MscI TGGCCA 2 cut(s) 628, 1703
MseI TTAA 8 cut(s) 49, 97, 274, 472, 1129, 1333, 1420, 1566
MslI CAYNNNNRTG 4 cut(s) 558, 639, 1066, 1213
Msp20I TGGCCA 2 cut(s) 628, 1703
MspI CCGG 1 cut(s) 6
MspR9I CCNGG 3 cut(s) 448, 652, 1351
Mva1269I GAATGC 1 cut(s) 420
MvaI CCWGG 3 cut(s) 448, 652, 1351
MwoI GCNNNNNNNGC 9 cut(s) 351, 615, 629, 810, 819, 1055, 1287, 1296, 1447
NaeI GCCGGC 1 cut(s) 7
NcoI CCATGG 2 cut(s) 850, 1326
NgoMIV GCCGGC 1 cut(s) 5
NlaIV GGNNCC 2 cut(s) 286, 1033
NmuCI GTSAC 2 cut(s) 695, 875
NsiI ATGCAT 3 cut(s) 422, 1106, 1452
NspI RCATGY 6 cut(s) 233, 434, 830, 1104, 1108, 1450
PaeI GCATGC 3 cut(s) 233, 1104, 1108
PaeR7I CTCGAG 1 cut(s) 60
PciI ACATGT 1 cut(s) 826
PctI GAATGC 1 cut(s) 420
PdiI GCCGGC 1 cut(s) 7
PfeI GAWTC 7 cut(s) 158, 261, 546, 933, 1152, 1189, 1406
PflMI CCANNNNNTGG 1 cut(s) 1356
PfoI TCCNGGA 1 cut(s) 446
PkrI GCNGC 4 cut(s) 617, 883, 1229, 1280
PleI GAGTC 3 cut(s) 33, 71, 186
PpsI GAGTC 3 cut(s) 33, 71, 186
PscI ACATGT 1 cut(s) 826
Psp6I CCWGG 3 cut(s) 446, 650, 1349
PspGI CCWGG 3 cut(s) 446, 650, 1349
PspN4I GGNNCC 2 cut(s) 286, 1033
PspPI GGNCC 3 cut(s) 644, 1047, 1550
PstNI CAGNNNCTG 3 cut(s) 615, 705, 1356
PsuI RGATCY 1 cut(s) 52
RsaI GTAC 4 cut(s) 42, 205, 286, 1558
RsaNI GTAC 4 cut(s) 41, 204, 285, 1557
RseI CAYNNNNRTG 4 cut(s) 558, 639, 1066, 1213
SaqAI TTAA 8 cut(s) 49, 97, 274, 472, 1129, 1333, 1420, 1566
SatI GCNGC 4 cut(s) 616, 882, 1228, 1279
Sau96I GGNCC 3 cut(s) 644, 1047, 1550
SchI GAGTC 3 cut(s) 34, 72, 187
ScrFI CCNGG 3 cut(s) 448, 652, 1351
SduI GDGCHC 2 cut(s) 143, 979
SfaNI GCATC 4 cut(s) 227, 610, 1428, 1494
SfcI CTRYAG 1 cut(s) 968
SfiI GGCCNNNNNGGCC 1 cut(s) 1055
Sfr274I CTCGAG 1 cut(s) 60
SinI GGWCC 1 cut(s) 644
SlaI CTCGAG 1 cut(s) 60
SmiMI CAYNNNNRTG 4 cut(s) 558, 639, 1066, 1213
SmlI CTYRAG 4 cut(s) 60, 252, 1008, 1020
SmoI CTYRAG 4 cut(s) 60, 252, 1008, 1020
SpeI ACTAGT 1 cut(s) 1338
SphI GCATGC 3 cut(s) 233, 1104, 1108
SspMI CTAG 7 cut(s) 22, 175, 573, 1261, 1272, 1339, 1413
StyD4I CCNGG 3 cut(s) 446, 650, 1349
StyI CCWWGG 4 cut(s) 485, 850, 1282, 1326
TaaI ACNGT 8 cut(s) 40, 138, 391, 722, 810, 920, 972, 1628
TaqI TCGA 5 cut(s) 28, 61, 217, 604, 868
TatI WGTACW 1 cut(s) 1556
TfiI GAWTC 7 cut(s) 158, 261, 546, 933, 1152, 1189, 1406
Tru1I TTAA 8 cut(s) 49, 97, 274, 472, 1129, 1333, 1420, 1566
Tru9I TTAA 8 cut(s) 49, 97, 274, 472, 1129, 1333, 1420, 1566
TscAI CASTG 7 cut(s) 143, 203, 352, 923, 977, 1486, 1652
TseFI GTSAC 2 cut(s) 695, 875
TseI GCWGC 4 cut(s) 615, 881, 1227, 1278
Tsp45I GTSAC 2 cut(s) 695, 875
TspDTI ATGAA 6 cut(s) 258, 400, 453, 1101, 1173, 1489
TspGWI ACGGA 3 cut(s) 63, 583, 1512
TspRI CASTG 7 cut(s) 143, 203, 352, 923, 977, 1486, 1652
Van91I CCANNNNNTGG 1 cut(s) 1356
VpaK11BI GGWCC 1 cut(s) 644
XagI CCTNNNNNAGG 2 cut(s) 186, 451
XapI RAATTY 4 cut(s) 363, 730, 1457, 1541
XceI RCATGY 6 cut(s) 233, 434, 830, 1104, 1108, 1450
XhoI CTCGAG 1 cut(s) 60
XmiI GTMKAC 1 cut(s) 994
XspI CTAG 7 cut(s) 22, 175, 573, 1261, 1272, 1339, 1413
Zsp2I ATGCAT 3 cut(s) 422, 1106, 1452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.