Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000249.1

Orthogroup ID

OG0008541

Physical Location & Seq

Genomic Coordinates Reverse (-)

18950 .. 22485

Gene Structure 3536 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

atggcgacgacgagcgctgtctacatcagtgtcatcgaggacgtcatcaacaaggtcaaagaagagttcgtcaatggcgccggagaagacgttctcaaggagcttcaaggaacttgggaggcgaagatgatgcaagctggtgttgtaactgctccgattgagaggtctgcggctgcaaagcccacacctggagttactccagttcatgatctcaacgtaccgtatgaggggactgaggagtatgaaactcctactgctgatttactcttccctccaaccccgttacaaactccaatgccacaaactcctattccaactcccatcccacaaactccaattcaaacaccaggaactgcagagaattataatattcctactggagctagtgatgattctggtggcggcaacgcaggtggaaatacagagttgaaaccgggaagacctagcccatacatgcaacctccttctccttggatgactcagcggcccccacttgatgttaatattgcttacgtggaagggcgggatgaggtggacagaggaacctctcatcaacccccgacacaggactttttcacaatgtctgctggaaagcgaaaacgtgaagaaatccccccacaatatcaagctggtgggtttataccccagcaagatggagccggagatgctatacctgaactttttgagattgagatttgtggggggagcacttctattggtggtggtgggcgtgcgtatggtaagatgtctgcttgtgcacccaagattcctcaactcgatgggcccatccctgatccctatgaagagctttctactcccaatatatacaattatcaaggagttttcaatgaagactacaacattgccaacacaccagctcccaatgatgtaccagtcagcactccagctcctgttgttcagaatgatgttggagatgatgatgaggacgatgagcccccattgaatgaaaatgacgatgatgatctggatgatgtggaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0000976 GO:0000977 GO:0000979 GO:0001012 GO:0001046 GO:0001047 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005672 GO:0006139 GO:0006351 GO:0006352 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016591 GO:0017025 GO:0018130 GO:0019438 GO:0022607 GO:0030880 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0043933 GO:0044085 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0046483 GO:0051123 GO:0055029 GO:0061695 GO:0065003 GO:0065004 GO:0070013 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1990234 GO:1990837

KEGG Pathways

Metabolic & Signaling

ko03022 ko05203 map03022 map05203

Pfam Domains

Protein Families

TFIIA

Protein Analysis

333

Amino Acids

35.66

Weight (kDa)

4.05

Isoelectric Point (pI)

57.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TFIIA	PF03153	7 - 139	2.6e-15	Transcription factor IIA, alpha/beta subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008541)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07470 AT1G07470 AT1G07480 AT1G07480 AT1G07480
fragaria_vesca	FvH4_3g36940
malus_domestica	MD03G1086200.v1.1 MD11G1094800.v1.1
prunus_persica	Prupe.6G070500_v2.0.a1 Prupe.6G070500_v2.0.a1 Prupe.6G070500_v2.0.a1
pyrus_communis	pycom03g06830 pycom11g08050
rosa_chinensis	RchiOBHm_Chr5g0066351
rosa_laevigata	RLG00000035853
rosa_multiflora	Rmu_ssc0000249.1_g000006
rosa_roxburghii	Rroxscaffold_1G00014790
rosa_rugosa	Rorug05G0377500
rosa_samantha	Rh5AG436000 Rh5BG452400 Rh5CG474700 Rh5DG467400
rosa_wichuraiana	Rw5G040840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	366
AarI	CACCTGC	1 cut(s)	401
AatII	GACGTC	1 cut(s)	45
Acc36I	ACCTGC	1 cut(s)	401
AccB1I	GGYRCC	1 cut(s)	77
AccI	GTMKAC	1 cut(s)	21
AciI	CCGC	4 cut(s)	170, 402, 484, 523
AclWI	GGATC	1 cut(s)	788
AcyI	GRCGYC	2 cut(s)	42, 78
AfaI	GTAC	2 cut(s)	219, 891
AfeI	AGCGCT	1 cut(s)	16
AfiI	CCNNNNNNNGG	3 cut(s)	188, 227, 565
AgsI	TTSAA	5 cut(s)	107, 341, 430, 847, 964
AjnI	CCWGG	2 cut(s)	187, 346
AloI	GAACNNNNNNTCC	2 cut(s)	75, 107
AluBI	AGCT	7 cut(s)	103, 137, 383, 629, 808, 878, 908
AluI	AGCT	7 cut(s)	103, 137, 383, 629, 808, 878, 908
Alw21I	GWGCWC	2 cut(s)	710, 760
Alw44I	GTGCAC	1 cut(s)	756
AlwI	GGATC	1 cut(s)	788
AlwNI	CAGNNNCTG	2 cut(s)	353, 911
Aor51HI	AGCGCT	1 cut(s)	16
AoxI	GGCC	2 cut(s)	485, 782
ApaI	GGGCCC	1 cut(s)	786
ApaLI	GTGCAC	1 cut(s)	756
ApeKI	GCWGC	1 cut(s)	173
Asp700I	GAANNNNTTC	1 cut(s)	90
AspLEI	GCGC	2 cut(s)	17, 80
AspS9I	GGNCC	3 cut(s)	486, 782, 783
AsuC2I	CCSGG	1 cut(s)	435
BaeGI	GKGCMC	2 cut(s)	760, 786
BanI	GGYRCC	1 cut(s)	77
BanII	GRGCYC	2 cut(s)	786, 957
BbsI	GAAGAC	3 cut(s)	93, 445, 858
Bbv12I	GWGCWC	2 cut(s)	710, 760
BbvI	GCAGC	1 cut(s)	160
BccI	CCATC	4 cut(s)	329, 647, 773, 794
BcgI	CGANNNNNNTGC	2 cut(s)	112, 146
BciT130I	CCWGG	2 cut(s)	189, 348
BcnI	CCSGG	1 cut(s)	435
BfaI	CTAG	2 cut(s)	384, 444
BfmI	CTRYAG	1 cut(s)	354
BfoI	RGCGCY	2 cut(s)	18, 81
BfuAI	ACCTGC	1 cut(s)	401
BisI	GCNGC	4 cut(s)	171, 174, 403, 485
BlsI	GCNGC	4 cut(s)	172, 175, 404, 486
Bme1390I	CCNGG	3 cut(s)	189, 348, 435
BmgT120I	GGNCC	3 cut(s)	486, 782, 783
BmiI	GGNNCC	5 cut(s)	79, 488, 544, 658, 784
BmrFI	CCNGG	3 cut(s)	189, 348, 435
BmsI	GCATC	2 cut(s)	120, 655
BpiI	GAAGAC	3 cut(s)	93, 445, 858
BpmI	CTGGAG	4 cut(s)	183, 210, 399, 888
BpuEI	CTTGAG	1 cut(s)	80
BpuMI	CCSGG	1 cut(s)	435
BsaAI	YACGTR	1 cut(s)	514
BsaBI	GATNNNNATC	1 cut(s)	981
BsaHI	GRCGYC	2 cut(s)	42, 78
BsaJI	CCNNGG	1 cut(s)	470
BsaXI	ACNNNNNCTCC	6 cut(s)	75, 105, 862, 892, 892, 922
Bsc4I	CCNNNNNNNGG	3 cut(s)	188, 227, 565
Bse1I	ACTGG	3 cut(s)	200, 382, 893
Bse3DI	GCAATG	1 cut(s)	861
Bse8I	GATNNNNATC	1 cut(s)	981
BseBI	CCWGG	2 cut(s)	189, 348
BseDI	CCNNGG	1 cut(s)	470
BseGI	GGATG	5 cut(s)	321, 480, 532, 786, 994
BseJI	GATNNNNATC	1 cut(s)	981
BseLI	CCNNNNNNNGG	3 cut(s)	188, 227, 565
BseMI	GCAATG	1 cut(s)	861
BseMII	CTCAG	2 cut(s)	225, 494
BseNI	ACTGG	3 cut(s)	200, 382, 893
BseRI	GAGGAG	1 cut(s)	251
BseSI	GKGCMC	2 cut(s)	760, 786
BseXI	GCAGC	1 cut(s)	160
BseYI	CCCAGC	1 cut(s)	645
BshFI	GGCC	2 cut(s)	487, 784
BshNI	GGYRCC	1 cut(s)	77
BsiHKAI	GWGCWC	2 cut(s)	710, 760
BsiSI	CCGG	3 cut(s)	81, 434, 660
BslFI	GGGAC	1 cut(s)	244
BslI	CCNNNNNNNGG	3 cut(s)	188, 227, 565
BsmFI	GGGAC	1 cut(s)	244
BsnI	GGCC	2 cut(s)	487, 784
Bsp120I	GGGCCC	1 cut(s)	782
Bsp1286I	GDGCHC	4 cut(s)	710, 760, 786, 957
Bsp143I	GATC	3 cut(s)	208, 793, 982
BspACI	CCGC	4 cut(s)	170, 402, 484, 523
BspANI	GGCC	2 cut(s)	487, 784
BspCNI	CTCAG	2 cut(s)	226, 493
BspHI	TCATGA	1 cut(s)	205
BspLI	GGNNCC	5 cut(s)	79, 488, 544, 658, 784
BspMAI	CTGCAG	1 cut(s)	358
BspMI	ACCTGC	1 cut(s)	401
BspPI	GGATC	1 cut(s)	788
BspQI	GCTCTTC	1 cut(s)	798
BspT107I	GGYRCC	1 cut(s)	77
BsrDI	GCAATG	1 cut(s)	861
BsrI	ACTGG	3 cut(s)	200, 382, 893
BssECI	CCNNGG	1 cut(s)	470
BssMI	GATC	3 cut(s)	208, 793, 982
BssNI	GRCGYC	2 cut(s)	42, 78
BssT1I	CCWWGG	1 cut(s)	470
Bst2UI	CCWGG	2 cut(s)	189, 348
Bst4CI	ACNGT	1 cut(s)	222
Bst6I	CTCTTC	3 cut(s)	57, 272, 798
BstACI	GRCGYC	2 cut(s)	42, 78
BstBAI	YACGTR	1 cut(s)	514
BstC8I	GCNNGC	2 cut(s)	135, 732
BstDEI	CTNAG	2 cut(s)	234, 480
BstF5I	GGATG	5 cut(s)	321, 480, 532, 786, 994
BstH2I	RGCGCY	2 cut(s)	18, 81
BstHHI	GCGC	2 cut(s)	17, 80
BstKTI	GATC	3 cut(s)	211, 796, 985
BstMBI	GATC	3 cut(s)	208, 793, 982
BstMWI	GCNNNNNNNGC	1 cut(s)	665
BstNI	CCWGG	2 cut(s)	189, 348
BstNSI	RCATGY	1 cut(s)	457
BstSCI	CCNGG	3 cut(s)	187, 346, 433
BstSFI	CTRYAG	1 cut(s)	354
BstSLI	GKGCMC	2 cut(s)	760, 786
BstV1I	GCAGC	1 cut(s)	160
BstV2I	GAAGAC	3 cut(s)	93, 445, 858
BstXI	CCANNNNNNTGG	1 cut(s)	653
BsuRI	GGCC	2 cut(s)	487, 784
BtsCI	GGATG	5 cut(s)	321, 480, 532, 786, 994
BtsIMutI	CAGTG	1 cut(s)	34
BveI	ACCTGC	1 cut(s)	401
Cac8I	GCNNGC	2 cut(s)	135, 732
CaiI	CAGNNNCTG	2 cut(s)	353, 911
CciI	TCATGA	1 cut(s)	205
CfoI	GCGC	2 cut(s)	17, 80
Cfr13I	GGNCC	3 cut(s)	486, 782, 783
Csp6I	GTAC	2 cut(s)	218, 890
CspCI	CAANNNNNGTGG	2 cut(s)	394, 429
CviAII	CATG	2 cut(s)	206, 454
CviQI	GTAC	2 cut(s)	218, 890
DdeI	CTNAG	2 cut(s)	234, 480
DinI	GGCGCC	1 cut(s)	79
DpnI	GATC	3 cut(s)	210, 795, 984
DpnII	GATC	3 cut(s)	208, 793, 982
Eam1104I	CTCTTC	3 cut(s)	57, 272, 798
EarI	CTCTTC	3 cut(s)	57, 272, 798
Eco130I	CCWWGG	1 cut(s)	470
Eco24I	GRGCYC	2 cut(s)	786, 957
Eco47III	AGCGCT	1 cut(s)	16
EcoRII	CCWGG	2 cut(s)	187, 346
EcoT14I	CCWWGG	1 cut(s)	470
EcoT38I	GRGCYC	2 cut(s)	786, 957
EgeI	GGCGCC	1 cut(s)	79
EheI	GGCGCC	1 cut(s)	79
ErhI	CCWWGG	1 cut(s)	470
FaeI	CATG	2 cut(s)	209, 457
FaqI	GGGAC	1 cut(s)	244
FatI	CATG	2 cut(s)	205, 453
FauI	CCCGC	1 cut(s)	516
FblI	GTMKAC	1 cut(s)	21
Fnu4HI	GCNGC	4 cut(s)	171, 174, 403, 485
FokI	GGATG	4 cut(s)	308, 487, 539, 773
FriOI	GRGCYC	2 cut(s)	786, 957
Fsp4HI	GCNGC	4 cut(s)	171, 174, 403, 485
FspBI	CTAG	2 cut(s)	384, 444
GlaI	GCGC	2 cut(s)	16, 79
GluI	GCNGC	4 cut(s)	171, 174, 403, 485
GsaI	CCCAGC	1 cut(s)	649
GsuI	CTGGAG	4 cut(s)	183, 210, 399, 888
HaeII	RGCGCY	2 cut(s)	18, 81
HaeIII	GGCC	2 cut(s)	487, 784
HapII	CCGG	3 cut(s)	81, 434, 660
HhaI	GCGC	2 cut(s)	17, 80
Hin1I	GRCGYC	2 cut(s)	42, 78
Hin1II	CATG	2 cut(s)	209, 457
Hin6I	GCGC	2 cut(s)	15, 78
HinP1I	GCGC	2 cut(s)	15, 78
HinfI	GANTC	3 cut(s)	392, 478, 766
HpaII	CCGG	3 cut(s)	81, 434, 660
Hpy166II	GTNNAC	3 cut(s)	22, 535, 758
Hpy188I	TCNGA	2 cut(s)	156, 921
Hpy188III	TCNNGA	2 cut(s)	206, 986
Hpy8I	GTNNAC	3 cut(s)	22, 535, 758
Hpy99I	CGWCG	2 cut(s)	10, 13
HpyAV	CCTTC	2 cut(s)	474, 512
HpyCH4III	ACNGT	1 cut(s)	222
HpyCH4IV	ACGT	5 cut(s)	42, 90, 216, 513, 601
HpyCH4V	TGCA	5 cut(s)	133, 176, 356, 457, 758
HpyF10VI	GCNNNNNNNGC	1 cut(s)	665
HpyF3I	CTNAG	2 cut(s)	234, 480
HpySE526I	ACGT	5 cut(s)	42, 90, 216, 513, 601
Hsp92I	GRCGYC	2 cut(s)	42, 78
Hsp92II	CATG	2 cut(s)	209, 457
HspAI	GCGC	2 cut(s)	15, 78
KasI	GGCGCC	1 cut(s)	77
Kzo9I	GATC	3 cut(s)	208, 793, 982
LguI	GCTCTTC	1 cut(s)	798
LmnI	GCTCC	7 cut(s)	100, 157, 380, 656, 705, 883, 913
Lsp1109I	GCAGC	1 cut(s)	160
LweI	GCATC	2 cut(s)	120, 655
MaeI	CTAG	2 cut(s)	384, 444
MaeII	ACGT	5 cut(s)	42, 90, 216, 513, 601
MaeIII	GTNAC	3 cut(s)	145, 193, 282
MalI	GATC	3 cut(s)	210, 795, 984
MboI	GATC	3 cut(s)	208, 793, 982
MboII	GAAGA	8 cut(s)	74, 98, 136, 259, 450, 617, 815, 863
MhlI	GDGCHC	4 cut(s)	710, 760, 786, 957
MluCI	AATT	3 cut(s)	336, 361, 829
Mly113I	GGCGCC	1 cut(s)	78
MlyI	GAGTC	1 cut(s)	472
MmeI	TCCRAC	3 cut(s)	299, 338, 910
MroXI	GAANNNNTTC	1 cut(s)	90
MseI	TTAA	1 cut(s)	501
MspA1I	CMGCKG	1 cut(s)	484
MspI	CCGG	3 cut(s)	81, 434, 660
MspR9I	CCNGG	3 cut(s)	189, 348, 435
MvaI	CCWGG	2 cut(s)	189, 348
MwoI	GCNNNNNNNGC	1 cut(s)	665
NarI	GGCGCC	1 cut(s)	78
NciI	CCSGG	1 cut(s)	435
NdeII	GATC	3 cut(s)	208, 793, 982
NlaIII	CATG	2 cut(s)	209, 457
NlaIV	GGNNCC	5 cut(s)	79, 488, 544, 658, 784
NspI	RCATGY	1 cut(s)	457
PagI	TCATGA	1 cut(s)	205
PaqCI	CACCTGC	1 cut(s)	401
PciSI	GCTCTTC	1 cut(s)	798
PdmI	GAANNNNTTC	1 cut(s)	90
PfeI	GAWTC	2 cut(s)	392, 766
PkrI	GCNGC	4 cut(s)	172, 175, 404, 486
PleI	GAGTC	1 cut(s)	472
PluTI	GGCGCC	1 cut(s)	81
PpsI	GAGTC	1 cut(s)	472
Ppu21I	YACGTR	1 cut(s)	514
PsiI	TTATAA	1 cut(s)	366
Psp6I	CCWGG	2 cut(s)	187, 346
PspFI	CCCAGC	1 cut(s)	645
PspGI	CCWGG	2 cut(s)	187, 346
PspN4I	GGNNCC	5 cut(s)	79, 488, 544, 658, 784
PspOMI	GGGCCC	1 cut(s)	782
PspPI	GGNCC	3 cut(s)	486, 782, 783
PstI	CTGCAG	1 cut(s)	358
PstNI	CAGNNNCTG	2 cut(s)	353, 911
RsaI	GTAC	2 cut(s)	219, 891
RsaNI	GTAC	2 cut(s)	218, 890
SapI	GCTCTTC	1 cut(s)	798
SaqAI	TTAA	1 cut(s)	501
SatI	GCNGC	4 cut(s)	171, 174, 403, 485
Sau3AI	GATC	3 cut(s)	208, 793, 982
Sau96I	GGNCC	3 cut(s)	486, 782, 783
SchI	GAGTC	1 cut(s)	472
ScrFI	CCNGG	3 cut(s)	189, 348, 435
SduI	GDGCHC	4 cut(s)	710, 760, 786, 957
SfaNI	GCATC	2 cut(s)	120, 655
SfcI	CTRYAG	1 cut(s)	354
SfoI	GGCGCC	1 cut(s)	79
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
Sse9I	AATT	3 cut(s)	336, 361, 829
SsiI	CCGC	4 cut(s)	170, 402, 484, 523
SspDI	GGCGCC	1 cut(s)	77
SspI	AATATT	2 cut(s)	370, 505
SspMI	CTAG	2 cut(s)	384, 444
StyD4I	CCNGG	3 cut(s)	187, 346, 433
StyI	CCWWGG	1 cut(s)	470
TaaI	ACNGT	1 cut(s)	222
TaiI	ACGT	5 cut(s)	45, 93, 219, 516, 604
TaqI	TCGA	2 cut(s)	36, 777
TasI	AATT	3 cut(s)	336, 361, 829
TauI	GCSGC	3 cut(s)	173, 405, 487
TfiI	GAWTC	2 cut(s)	392, 766
Tru1I	TTAA	1 cut(s)	501
Tru9I	TTAA	1 cut(s)	501
TscAI	CASTG	1 cut(s)	34
TseI	GCWGC	1 cut(s)	173
TspDTI	ATGAA	5 cut(s)	194, 258, 816, 864, 981
TspRI	CASTG	1 cut(s)	34
VneI	GTGCAC	1 cut(s)	756
XceI	RCATGY	1 cut(s)	457
XmiI	GTMKAC	1 cut(s)	21
XmnI	GAANNNNTTC	1 cut(s)	90
XspI	CTAG	2 cut(s)	384, 444
ZraI	GACGTC	1 cut(s)	43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.