Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000252.1

Orthogroup ID

OG0005148

Physical Location & Seq

Genomic Coordinates Reverse (-)

46291 .. 53137

Gene Structure 6847 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3039 bp

atgaacactcgtgaagagctctttcaggtctgcgaacaatgtaacaatgttaaatatgaaagggagggatatttcatcactgttgatattgagaaagggatgcaagatggacaagaggtggttttctatgaggatggtgaacccataattgatggagaacctggagatttaaaagtcagtgctttgaccttaccaccttggtcgcgtggggtttcaaagttcttgcaaattcagagatgtaactcctcccaatctccaattaatgagagctcaaagcccttaagaaccatcacttcatcaagcttgcgagacggttccactaaattcttcgattttactgttattggtagtggagttgctggcctacgctatgccctggaagtggcaaaacatggatctgttgctgtcattaccaaggctgagcctcatgaaagtaatacaaattatgctcaaggtggtgttagtgctgtactgtgcccttcggattctgtggagagtcatgtccaggacaccattgtagcaggagcttatctatgtgatgaggagactgtcagagttgtttgtacagagggacctgaaagaattagagaattaattgcaatgggagcatcatttgatcacggggaggatggaaacttgcacctaacaagagaggggggtcactctcatcacagaattgttcatgctgctgatatgacaggaagggagattgaacgggcactgttggaggcagttattaaggatcctaatatcttcatgtttcaacaccattttgctatagatttgctaacttctcaggacggttctgagacagtttgcctgggtgttgacactttgaatacagagacacttgaggtgatacgttttatttcaaaggtgactttactagcatcaggtggggctggacaaatctatccaaccactacaaatcctccggtagccactggagatggaattgcaatggctcatcgagctcaagctgtggtctccaacatggaatttgttcagttccaccccacggctttggctgatgaaggcctccctgtcaaatctaccaaggctcgaggaaatgcatttctcatcactgaagctgtcaggggtgatggtggcattctgtacaatttagacatggaaaggttcatgccactgtatgatgaacgagcagaacttgctaccagggatgtggtagctagaagcatagatgaccagcttaaaaagcgtaatgagaagtatgtgctacttgatataagtcacaagccgagggacaaaattctatcacacttccctaatattgctgctgagtgccttagaggtggcttggatataactcgccagccaattcctgtggttcctgcagctcattatatgtgtgggggtgtccgtgctggactccagggagagacgaatgtgcagggcctttatgtggcaggcgaagttgcttgcacaggtttgcatggagctaaccgtcttgctagtaactcattgcttgaagctctggtttttgcacgaagagcagtccagccctccattgatcacatgaagagctctagccttgacttcagtgcttcaaattggtggtccagaccagttgtgcctatgtcacttgagcgcaatgtcatcaacaaaattttgaccatgaccaggaaagtaagaaaagaattgcaatcaatcatgtggaactatgttggaattgttcgttctacaacaaggctcgaggcagcagaacaaaagattcatgatcttgaggcgaaatgggaggactacttattccggttgggatgggaacccacaatggtggggcttgaggcttgtgaaatgagaaacttcttttgttgtgcaaagatggtggtgagcagtgcccttgctagacatgagagccgtggtcttcactacacgattgattttcctcatgttgaagaaattgctgaggctaaggttagcatggatcttgtgaggctattttttgcagtacttggcattttagctttgggagtgaatgctggtggttctgggagttgtaggtttccggccatatacaactttggtgactcaaactccgacaccggcgctatttcagccgccatagaagtggttcctcctcccaatggtgaaagtttctttggacattcttctggacgcttttctgatggtcgccttattatagatttcatagctgagaaattgcagctaccatatctcagtccatacttggactcacttgggactaatttcaggcatggtgcaaattttgcaactggcggttcatccattaggccaggcggttatagcccgtttcatctcggcattcaagtttcacagttcataagattcaagtctcaatccatagccctctacaagcaacacagttcaaacactcaaagacttcccaggccggaggacttctcgaaagctttgtacacaattgatattggtcagaatgatcttgcctatggttttcaacacgggacgattcagcaagttcaagcttccattcctgatattctcactcagttagaccaagccatgaataaactatacaaagaaggggcaaggtttttttgggtgcataacacaggccctcatgggtgcttgccctataatgtcatctatgacaaatcaaagcctggtaatctggaccagattggctgcgtgaagcctaccaacgaggtagctcaggagttcaatcggcagcttaagaacagcgtattaaacttgaggaagcagctccctcttgcagtattcacttatgtcgatgtgtattcagctaaatatacagtgataagcaacgcgaaaaatgaaggttttgtggatccattcgacttctgctgtggcagttacaaggggtaccatattgattgtggaaagaaggccatagtgaatggaacggtatatggcaacccttgtaataatccatcaagacatattagttgggatggcatacactactctcaggcagcaaacatattgcttgccaatcaaattattaacggctcactatctgatccaccagtttcaatcacagaggcttgtcatgggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009165 GO:0009435 GO:0009507 GO:0009536 GO:0009987 GO:0018130 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019637 GO:0019674 GO:0034641 GO:0034654 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046496 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072524 GO:0072525 GO:0090407 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00250 ko00760 ko01100 map00250 map00760 map01100

Pfam Domains

Protein Families

FAD_binding_2 Succ_DH_flav_C

Protein Analysis

1012

Amino Acids

111.38

Weight (kDa)

5.97

Isoelectric Point (pI)

38.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAO	PF01266	111 - 219	1.5e-06	FAD dependent oxidoreductase
FAD_binding_2	PF00890	112 - 495	1.2e-87	FAD binding domain
Succ_DH_flav_C	PF02910	551 - 637	2.1e-16	Fumarate reductase flavoprotein C-term
Lipase_GDSL	PF00657	678 - 994	5.4e-45	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005148)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14760
fragaria_vesca	FvH4_6g50750 FvH4_6g50750 FvH4_6g50750 FvH4_6g50750 FvH4_6g50750
malus_domestica	MD09G1032700.v1.1 MD17G1034300.v1.1
prunus_persica	Prupe.3G285300_v2.0.a1 Prupe.3G285300_v2.0.a1 Prupe.3G285300_v2.0.a1 Prupe.3G285300_v2.0.a1 Prupe.3G285300_v2.0.a1 Prupe.3G285300_v2.0.a1 Prupe.3G285300_v2.0.a1 Prupe.3G285300_v2.0.a1 Prupe.3G285300_v2.0.a1
pyrus_communis	pycom111g02610 pycom17g03170
rosa_chinensis	RchiOBHm_Chr2g0171691
rosa_laevigata	RLG00000022029
rosa_multiflora	Rmu_ssc0000252.1_g000010
rosa_roxburghii	Rroxscaffold_2G00080520
rosa_rugosa	Rorug02G0555400
rosa_samantha	Rh2AG630400 Rh2BG640900 Rh2BG643400 Rh2CG609100 Rh2DG651800
rosa_wichuraiana	Rw2G052170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	2844
AccB1I	GGYRCC	1 cut(s)	2844
AccII	CGCG	2 cut(s)	205, 2789
AciI	CCGC	3 cut(s)	2079, 2259, 2280
AclWI	GGATC	7 cut(s)	403, 737, 750, 1953, 2804, 2817, 2996
AcoI	YGGCCR	1 cut(s)	2028
AcsI	RAATTY	6 cut(s)	228, 323, 998, 1269, 1626, 2245
AcuI	CTGAAG	2 cut(s)	1107, 1543
AfaI	GTAC	6 cut(s)	471, 565, 1118, 1971, 2417, 2846
AfiI	CCNNNNNNNGG	5 cut(s)	382, 1018, 1423, 1641, 2105
AflII	CTTAAG	2 cut(s)	280, 2693
AjuI	GAANNNNNNNTTGG	2 cut(s)	2103, 2135
AleI	CACNNNNGTG	1 cut(s)	1793
Alw21I	GWGCWC	4 cut(s)	21, 272, 976, 1547
Alw26I	GTCTC	7 cut(s)	303, 539, 803, 839, 991, 1394, 2340
AlwI	GGATC	7 cut(s)	403, 737, 750, 1953, 2804, 2817, 2996
Ama87I	CYCGRG	2 cut(s)	1062, 1712
AoxI	GGCC	8 cut(s)	361, 1036, 1414, 2028, 2273, 2390, 2575, 2868
ApeKI	GCWGC	9 cut(s)	686, 1295, 1355, 1718, 2185, 2646, 2689, 2722, 2954
ApoI	RAATTY	6 cut(s)	228, 323, 998, 1269, 1626, 2245
ArsI	GACNNNNNNTTYG	2 cut(s)	1562, 1594
AseI	ATTAAT	2 cut(s)	261, 593
Asp700I	GAANNNNTTC	2 cut(s)	1002, 2091
Asp718I	GGTACC	1 cut(s)	2844
AspLEI	GCGC	2 cut(s)	1611, 2069
AspS9I	GGNCC	5 cut(s)	572, 1414, 1578, 2576, 2635
AsuHPI	GGTGA	7 cut(s)	149, 868, 889, 1112, 1861, 2057, 2120
AvaI	CYCGRG	2 cut(s)	1062, 1712
AvaII	GGWCC	3 cut(s)	572, 1578, 2635
BaeGI	GKGCMC	3 cut(s)	479, 721, 1861
BamHI	GGATCC	2 cut(s)	742, 2809
BanI	GGYRCC	1 cut(s)	2844
BanII	GRGCYC	4 cut(s)	21, 272, 976, 1547
BauI	CACGAG	1 cut(s)	9
BbsI	GAAGAC	1 cut(s)	1877
Bbv12I	GWGCWC	4 cut(s)	21, 272, 976, 1547
BbvCI	CCTCAGC	1 cut(s)	1926
BbvI	GCAGC	9 cut(s)	673, 1282, 1367, 1730, 2197, 2633, 2701, 2734, 2966
BceAI	ACGGC	3 cut(s)	1035, 1863, 3004
BclI	TGATCA	2 cut(s)	616, 1531
BcoDI	GTCTC	7 cut(s)	303, 539, 803, 839, 991, 1394, 2340
BfaI	CTAG	5 cut(s)	887, 1191, 1473, 1548, 1866
BfmI	CTRYAG	2 cut(s)	777, 1353
BfoI	RGCGCY	1 cut(s)	2070
BfrI	CTTAAG	2 cut(s)	280, 2693
BlpI	GCTNAGC	1 cut(s)	420
BmcAI	AGTACT	1 cut(s)	1971
Bme18I	GGWCC	3 cut(s)	572, 1578, 2635
BmeT110I	CYCGRG	2 cut(s)	1062, 1712
BmgT120I	GGNCC	5 cut(s)	572, 1414, 1578, 2576, 2635
BmiI	GGNNCC	8 cut(s)	316, 573, 744, 1350, 1785, 2094, 2811, 2846
BmsI	GCATC	3 cut(s)	90, 617, 899
BpiI	GAAGAC	1 cut(s)	1877
BplI	GAGNNNNNCTC	2 cut(s)	2387, 2419
BpmI	CTGGAG	3 cut(s)	183, 966, 1376
Bpu10I	CCTNAGC	3 cut(s)	1926, 1932, 2673
Bpu1102I	GCTNAGC	1 cut(s)	420
BpuEI	CTTGAG	7 cut(s)	435, 872, 960, 1625, 1763, 1823, 2734
BsaI	GGTCTC	1 cut(s)	991
BsaWI	WCCGGW	2 cut(s)	934, 1770
BsaXI	ACNNNNNCTCC	4 cut(s)	916, 946, 2039, 2069
Bsc4I	CCNNNNNNNGG	5 cut(s)	382, 1018, 1423, 1641, 2105
Bse118I	RCCGGY	1 cut(s)	2063
Bse1I	ACTGG	4 cut(s)	949, 1586, 2260, 3008
Bse3DI	GCAATG	4 cut(s)	606, 966, 1481, 1618
BseGI	GGATG	7 cut(s)	105, 139, 634, 1186, 1784, 2264, 2938
BseLI	CCNNNNNNNGG	5 cut(s)	382, 1018, 1423, 1641, 2105
BseMI	GCAATG	4 cut(s)	606, 966, 1481, 1618
BseNI	ACTGG	4 cut(s)	949, 1586, 2260, 3008
BseRI	GAGGAG	3 cut(s)	235, 557, 2088
BseSI	GKGCMC	3 cut(s)	479, 721, 1861
BseXI	GCAGC	9 cut(s)	673, 1282, 1367, 1730, 2197, 2633, 2701, 2734, 2966
BsgI	GTGCAG	1 cut(s)	1430
Bsh1236I	CGCG	2 cut(s)	205, 2789
BshFI	GGCC	8 cut(s)	363, 1038, 1416, 2030, 2275, 2392, 2577, 2870
BshNI	GGYRCC	1 cut(s)	2844
BsiHKAI	GWGCWC	4 cut(s)	21, 272, 976, 1547
BsiHKCI	CYCGRG	2 cut(s)	1062, 1712
BsiSI	CCGG	5 cut(s)	935, 1771, 2027, 2064, 2393
BslFI	GGGAC	4 cut(s)	585, 1277, 2236, 2479
BslI	CCNNNNNNNGG	5 cut(s)	382, 1018, 1423, 1641, 2105
BsmAI	GTCTC	7 cut(s)	303, 539, 803, 839, 991, 1394, 2340
BsmBI	CGTCTC	2 cut(s)	303, 1394
BsmFI	GGGAC	4 cut(s)	585, 1277, 2236, 2479
BsmI	GAATGC	3 cut(s)	1110, 2002, 2304
BsnI	GGCC	8 cut(s)	363, 1038, 1416, 2030, 2275, 2392, 2577, 2870
Bso31I	GGTCTC	1 cut(s)	991
BsoBI	CYCGRG	2 cut(s)	1062, 1712
Bsp1286I	GDGCHC	7 cut(s)	21, 272, 479, 721, 976, 1547, 1861
Bsp1407I	TGTACA	3 cut(s)	563, 1116, 2415
Bsp143I	GATC	9 cut(s)	395, 616, 742, 1531, 1738, 1945, 2440, 2809, 3001
Bsp1720I	GCTNAGC	1 cut(s)	420
BspACI	CCGC	3 cut(s)	2079, 2259, 2280
BspANI	GGCC	8 cut(s)	363, 1038, 1416, 2030, 2275, 2392, 2577, 2870
BspFNI	CGCG	2 cut(s)	205, 2789
BspHI	TCATGA	2 cut(s)	427, 1735
BspLI	GGNNCC	8 cut(s)	316, 573, 744, 1350, 1785, 2094, 2811, 2846
BspMAI	CTGCAG	1 cut(s)	1357
BspPI	GGATC	7 cut(s)	403, 737, 750, 1953, 2804, 2817, 2996
BspQI	GCTCTTC	3 cut(s)	9, 1504, 1535
BspT107I	GGYRCC	1 cut(s)	2844
BspTI	CTTAAG	2 cut(s)	280, 2693
BspTNI	GGTCTC	1 cut(s)	991
BsrDI	GCAATG	4 cut(s)	606, 966, 1481, 1618
BsrFI	RCCGGY	1 cut(s)	2063
BsrGI	TGTACA	3 cut(s)	563, 1116, 2415
BsrI	ACTGG	4 cut(s)	949, 1586, 2260, 3008
BssAI	RCCGGY	1 cut(s)	2063
BssMI	GATC	9 cut(s)	395, 616, 742, 1531, 1738, 1945, 2440, 2809, 3001
BssSI	CACGAG	1 cut(s)	9
BssT1I	CCWWGG	3 cut(s)	197, 414, 1056
Bst2BI	CACGAG	1 cut(s)	9
Bst6I	CTCTTC	3 cut(s)	9, 1504, 1535
BstAFI	CTTAAG	2 cut(s)	280, 2693
BstAPI	GCANNNNNTGC	2 cut(s)	1169, 2249
BstAUI	TGTACA	3 cut(s)	563, 1116, 2415
BstC8I	GCNNGC	7 cut(s)	305, 361, 1334, 1429, 1441, 2591, 2970
BstDSI	CCRYGG	2 cut(s)	1017, 1879
BstF5I	GGATG	7 cut(s)	105, 139, 634, 1186, 1784, 2264, 2938
BstFNI	CGCG	2 cut(s)	205, 2789
BstH2I	RGCGCY	1 cut(s)	2070
BstHHI	GCGC	2 cut(s)	1611, 2069
BstKTI	GATC	9 cut(s)	398, 619, 745, 1534, 1741, 1948, 2443, 2812, 3004
BstMAI	GTCTC	7 cut(s)	303, 539, 803, 839, 991, 1394, 2340
BstMBI	GATC	9 cut(s)	395, 616, 742, 1531, 1738, 1945, 2440, 2809, 3001
BstMWI	GCNNNNNNNGC	8 cut(s)	605, 971, 1169, 1216, 1511, 2075, 2249, 2286
BstSFI	CTRYAG	2 cut(s)	777, 1353
BstSLI	GKGCMC	3 cut(s)	479, 721, 1861
BstUI	CGCG	2 cut(s)	205, 2789
BstV1I	GCAGC	9 cut(s)	673, 1282, 1367, 1730, 2197, 2633, 2701, 2734, 2966
BstV2I	GAAGAC	1 cut(s)	1877
BstX2I	RGATCY	4 cut(s)	395, 742, 1945, 2809
BstXI	CCANNNNNNTGG	4 cut(s)	1024, 1183, 1795, 2089
BstYI	RGATCY	4 cut(s)	395, 742, 1945, 2809
BsuRI	GGCC	8 cut(s)	363, 1038, 1416, 2030, 2275, 2392, 2577, 2870
BtgI	CCRYGG	2 cut(s)	1017, 1879
BtsCI	GGATG	7 cut(s)	105, 139, 634, 1186, 1784, 2264, 2938
BtsI	GCAGTG	1 cut(s)	1861
BtsIMutI	CAGTG	9 cut(s)	78, 184, 719, 942, 1083, 1145, 1567, 1861, 2781
Cac8I	GCNNGC	7 cut(s)	305, 361, 1334, 1429, 1441, 2591, 2970
CciI	TCATGA	2 cut(s)	427, 1735
CfoI	GCGC	2 cut(s)	1611, 2069
Cfr10I	RCCGGY	1 cut(s)	2063
Cfr13I	GGNCC	5 cut(s)	572, 1414, 1578, 2576, 2635
CseI	GACGC	1 cut(s)	2145
Csp6I	GTAC	6 cut(s)	470, 564, 1117, 1970, 2416, 2845
CspCI	CAANNNNNGTGG	4 cut(s)	1326, 1361, 1827, 1862
CviQI	GTAC	6 cut(s)	470, 564, 1117, 1970, 2416, 2845
DpnI	GATC	9 cut(s)	397, 618, 744, 1533, 1740, 1947, 2442, 2811, 3003
DpnII	GATC	9 cut(s)	395, 616, 742, 1531, 1738, 1945, 2440, 2809, 3001
DraI	TTTAAA	1 cut(s)	171
EaeI	YGGCCR	1 cut(s)	2028
Eam1104I	CTCTTC	3 cut(s)	9, 1504, 1535
EarI	CTCTTC	3 cut(s)	9, 1504, 1535
Ecl136II	GAGCTC	4 cut(s)	19, 270, 974, 1545
Eco130I	CCWWGG	3 cut(s)	197, 414, 1056
Eco147I	AGGCCT	1 cut(s)	1038
Eco24I	GRGCYC	4 cut(s)	21, 272, 976, 1547
Eco31I	GGTCTC	1 cut(s)	991
Eco47I	GGWCC	3 cut(s)	572, 1578, 2635
Eco53kI	GAGCTC	4 cut(s)	19, 270, 974, 1545
Eco57I	CTGAAG	2 cut(s)	1107, 1543
Eco88I	CYCGRG	2 cut(s)	1062, 1712
EcoICRI	GAGCTC	4 cut(s)	19, 270, 974, 1545
EcoO109I	RGGNCCY	3 cut(s)	572, 1414, 2576
EcoT14I	CCWWGG	3 cut(s)	197, 414, 1056
EcoT22I	ATGCAT	1 cut(s)	1075
EcoT38I	GRGCYC	4 cut(s)	21, 272, 976, 1547
ErhI	CCWWGG	3 cut(s)	197, 414, 1056
Esp3I	CGTCTC	2 cut(s)	303, 1394
FaqI	GGGAC	4 cut(s)	585, 1277, 2236, 2479
FbaI	TGATCA	2 cut(s)	616, 1531
FokI	GGATG	7 cut(s)	112, 146, 641, 1193, 1791, 2251, 2945
FriOI	GRGCYC	4 cut(s)	21, 272, 976, 1547
FspBI	CTAG	5 cut(s)	887, 1191, 1473, 1548, 1866
GlaI	GCGC	2 cut(s)	1610, 2068
GsuI	CTGGAG	3 cut(s)	183, 966, 1376
HaeII	RGCGCY	1 cut(s)	2070
HaeIII	GGCC	8 cut(s)	363, 1038, 1416, 2030, 2275, 2392, 2577, 2870
HapII	CCGG	5 cut(s)	935, 1771, 2027, 2064, 2393
HgaI	GACGC	1 cut(s)	2145
HhaI	GCGC	2 cut(s)	1611, 2069
Hin6I	GCGC	2 cut(s)	1609, 2067
HinP1I	GCGC	2 cut(s)	1609, 2067
HincII	GTYRAC	1 cut(s)	829
HindII	GTYRAC	1 cut(s)	829
HindIII	AAGCTT	3 cut(s)	301, 2409, 2484
HinfI	GANTC	8 cut(s)	485, 496, 1389, 1732, 2048, 2213, 2328, 2470
HpaII	CCGG	5 cut(s)	935, 1771, 2027, 2064, 2393
HphI	GGTGA	7 cut(s)	149, 868, 889, 1112, 1861, 2057, 2120
Hpy166II	GTNNAC	3 cut(s)	140, 829, 2418
Hpy188I	TCNGA	8 cut(s)	234, 484, 554, 808, 2059, 2146, 2436, 3001
Hpy8I	GTNNAC	3 cut(s)	140, 829, 2418
HpyAV	CCTTC	6 cut(s)	489, 696, 1028, 2537, 2792, 2860
HpyCH4IV	ACGT	1 cut(s)	862
HpyF10VI	GCNNNNNNNGC	8 cut(s)	605, 971, 1169, 1216, 1511, 2075, 2249, 2286
HpySE526I	ACGT	1 cut(s)	862
HspAI	GCGC	2 cut(s)	1609, 2067
KpnI	GGTACC	1 cut(s)	2848
Ksp22I	TGATCA	2 cut(s)	616, 1531
Kzo9I	GATC	9 cut(s)	395, 616, 742, 1531, 1738, 1945, 2440, 2809, 3001
LguI	GCTCTTC	3 cut(s)	9, 1504, 1535
LmnI	GCTCC	4 cut(s)	524, 605, 1457, 2730
Lsp1109I	GCAGC	9 cut(s)	673, 1282, 1367, 1730, 2197, 2633, 2701, 2734, 2966
LweI	GCATC	3 cut(s)	90, 617, 899
MaeI	CTAG	5 cut(s)	887, 1191, 1473, 1548, 1866
MaeII	ACGT	1 cut(s)	862
MaeIII	GTNAC	9 cut(s)	41, 239, 659, 877, 1250, 1475, 1599, 2045, 2834
MalI	GATC	9 cut(s)	397, 618, 744, 1533, 1740, 1947, 2442, 2811, 3003
MboI	GATC	9 cut(s)	395, 616, 742, 1531, 1738, 1945, 2440, 2809, 3001
MboII	GAAGA	8 cut(s)	26, 319, 745, 1521, 1552, 1877, 1928, 2121
MfeI	CAATTG	1 cut(s)	2421
MflI	RGATCY	4 cut(s)	395, 742, 1945, 2809
MhlI	GDGCHC	7 cut(s)	21, 272, 479, 721, 976, 1547, 1861
MlyI	GAGTC	4 cut(s)	505, 1383, 2042, 2207
MmeI	TCCRAC	5 cut(s)	705, 941, 1014, 1666, 2082
Mph1103I	ATGCAT	1 cut(s)	1075
MroXI	GAANNNNTTC	2 cut(s)	1002, 2091
MslI	CAYNNNNRTG	2 cut(s)	1793, 2087
MspCI	CTTAAG	2 cut(s)	280, 2693
MspI	CCGG	5 cut(s)	935, 1771, 2027, 2064, 2393
MunI	CAATTG	1 cut(s)	2421
Mva1269I	GAATGC	3 cut(s)	1110, 2002, 2304
MvnI	CGCG	2 cut(s)	205, 2789
MwoI	GCNNNNNNNGC	8 cut(s)	605, 971, 1169, 1216, 1511, 2075, 2249, 2286
NdeII	GATC	9 cut(s)	395, 616, 742, 1531, 1738, 1945, 2440, 2809, 3001
NlaIV	GGNNCC	8 cut(s)	316, 573, 744, 1350, 1785, 2094, 2811, 2846
NmeAIII	GCCGAG	2 cut(s)	1284, 2280
NmuCI	GTSAC	5 cut(s)	659, 877, 1250, 1599, 2045
NsiI	ATGCAT	1 cut(s)	1075
OliI	CACNNNNGTG	1 cut(s)	1793
PaeR7I	CTCGAG	2 cut(s)	1062, 1712
PagI	TCATGA	2 cut(s)	427, 1735
PceI	AGGCCT	1 cut(s)	1038
PciSI	GCTCTTC	3 cut(s)	9, 1504, 1535
PctI	GAATGC	3 cut(s)	1110, 2002, 2304
PdmI	GAANNNNTTC	2 cut(s)	1002, 2091
PfeI	GAWTC	4 cut(s)	485, 1732, 2328, 2470
PfoI	TCCNGGA	1 cut(s)	504
PleI	GAGTC	4 cut(s)	504, 1383, 2042, 2207
PpsI	GAGTC	4 cut(s)	504, 1383, 2042, 2207
PpuMI	RGGWCCY	1 cut(s)	572
PshBI	ATTAAT	2 cut(s)	261, 593
Psp124BI	GAGCTC	4 cut(s)	21, 272, 976, 1547
Psp5II	RGGWCCY	1 cut(s)	572
PspN4I	GGNNCC	8 cut(s)	316, 573, 744, 1350, 1785, 2094, 2811, 2846
PspPI	GGNCC	5 cut(s)	572, 1414, 1578, 2576, 2635
PspPPI	RGGWCCY	1 cut(s)	572
PspXI	VCTCGAGB	2 cut(s)	1062, 1712
PstI	CTGCAG	1 cut(s)	1357
PsuI	RGATCY	4 cut(s)	395, 742, 1945, 2809
RsaI	GTAC	6 cut(s)	471, 565, 1118, 1971, 2417, 2846
RsaNI	GTAC	6 cut(s)	470, 564, 1117, 1970, 2416, 2845
RseI	CAYNNNNRTG	2 cut(s)	1793, 2087
SacI	GAGCTC	4 cut(s)	21, 272, 976, 1547
SapI	GCTCTTC	3 cut(s)	9, 1504, 1535
Sau3AI	GATC	9 cut(s)	395, 616, 742, 1531, 1738, 1945, 2440, 2809, 3001
Sau96I	GGNCC	5 cut(s)	572, 1414, 1578, 2576, 2635
ScaI	AGTACT	1 cut(s)	1971
SchI	GAGTC	4 cut(s)	505, 1383, 2042, 2207
SduI	GDGCHC	7 cut(s)	21, 272, 479, 721, 976, 1547, 1861
SfaNI	GCATC	3 cut(s)	90, 617, 899
SfcI	CTRYAG	2 cut(s)	777, 1353
Sfr274I	CTCGAG	2 cut(s)	1062, 1712
SgrAI	CRCCGGYG	1 cut(s)	2063
SinI	GGWCC	3 cut(s)	572, 1578, 2635
SlaI	CTCGAG	2 cut(s)	1062, 1712
SmiMI	CAYNNNNRTG	2 cut(s)	1793, 2087
SseBI	AGGCCT	1 cut(s)	1038
SsiI	CCGC	3 cut(s)	2079, 2259, 2280
SspI	AATATT	1 cut(s)	1291
SspMI	CTAG	5 cut(s)	887, 1191, 1473, 1548, 1866
SstI	GAGCTC	4 cut(s)	21, 272, 976, 1547
StuI	AGGCCT	1 cut(s)	1038
StyI	CCWWGG	3 cut(s)	197, 414, 1056
TaiI	ACGT	1 cut(s)	865
TaqI	TCGA	7 cut(s)	330, 970, 1063, 1713, 2405, 2751, 2817
TatI	WGTACW	5 cut(s)	469, 563, 1116, 1969, 2415
TauI	GCSGC	1 cut(s)	2081
TfiI	GAWTC	4 cut(s)	485, 1732, 2328, 2470
TscAI	CASTG	9 cut(s)	85, 184, 726, 949, 1090, 1152, 1567, 1861, 2781
TseFI	GTSAC	5 cut(s)	659, 877, 1250, 1599, 2045
TseI	GCWGC	9 cut(s)	686, 1295, 1355, 1718, 2185, 2646, 2689, 2722, 2954
Tsp45I	GTSAC	5 cut(s)	659, 877, 1250, 1599, 2045
TspGWI	ACGGA	1 cut(s)	1370
TspRI	CASTG	9 cut(s)	85, 184, 726, 949, 1090, 1152, 1567, 1861, 2781
Vha464I	CTTAAG	2 cut(s)	280, 2693
VpaK11BI	GGWCC	3 cut(s)	572, 1578, 2635
VspI	ATTAAT	2 cut(s)	261, 593
XapI	RAATTY	6 cut(s)	228, 323, 998, 1269, 1626, 2245
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2855
XhoI	CTCGAG	2 cut(s)	1062, 1712
XmnI	GAANNNNTTC	2 cut(s)	1002, 2091
XspI	CTAG	5 cut(s)	887, 1191, 1473, 1548, 1866
ZrmI	AGTACT	1 cut(s)	1971
Zsp2I	ATGCAT	1 cut(s)	1075

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.