Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000272.1

Orthogroup ID

OG0018678

Physical Location & Seq

Genomic Coordinates Forward (+)

54305 .. 55596

Gene Structure 1292 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

atggtgaccattgtgtgtgtcatttctgctcgtgcaaagttgaaggatgttgcgctgagtgacgtggttttgtcaaattatgtgcgccagggactggctggtgtagcagtttcggtgattggtgaaatgctacaacagggcctaagacccgacaaggttgccatgttatctgcaatttcaggttgtgcacaactgagtgattctctctctggaaagtgccgccatggttatgttctaaggaatggactagaaggccaccctctcccacgccaccacagcctacccttccattctaggcaccacccccgtcgacgtctcctccggcgccaccaccaccaacctgatccccccctcaccccctctctctctctatctcttttccaaaatccgattccagttttggttggcatcgcctccgatagccagagagtgaaaatggagccactggcacaaggacttcgacgtccagtacaagcacctttcaccggatgcttcgggtttcgattctggggagagagagatgtgtggccgattccggttccggcgacgaggtcgaagaatcatattatttgggcgtgggatcgccgggagagggagccggaggaatctggagtgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

205

Amino Acids

22.92

Weight (kDa)

10.38

Isoelectric Point (pI)

53.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018678)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0006648.1_g000008 Rmu_ssc0000272.1_g000010
rosa_roxburghii	Rroxscaffold_6G00418870
rosa_samantha	Rh1BG151200 Rh4DG055800 Rh5BG513000 Rh5CG536700 Rh5DG525100 Rh6DG312000 Rh7CG250900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	462
AatII	GACGTC	2 cut(s)	316, 466
AccB1I	GGYRCC	2 cut(s)	297, 324
AccB7I	CCANNNNNTGG	1 cut(s)	94
AccI	GTMKAC	1 cut(s)	310
AciI	CCGC	1 cut(s)	220
AclWI	GGATC	2 cut(s)	338, 588
AcoI	YGGCCR	1 cut(s)	527
AcyI	GRCGYC	3 cut(s)	313, 325, 463
AfaI	GTAC	1 cut(s)	471
AfiI	CCNNNNNNNGG	3 cut(s)	94, 485, 592
AgsI	TTSAA	1 cut(s)	43
AjiI	CACGTC	1 cut(s)	64
AjnI	CCWGG	1 cut(s)	87
AjuI	GAANNNNNNNTTGG	2 cut(s)	375, 407
Alw21I	GWGCWC	1 cut(s)	190
Alw26I	GTCTC	1 cut(s)	320
Alw44I	GTGCAC	1 cut(s)	186
AlwI	GGATC	2 cut(s)	338, 588
AlwNI	CAGNNNCTG	1 cut(s)	94
AoxI	GGCC	3 cut(s)	139, 253, 527
ApaLI	GTGCAC	1 cut(s)	186
AspLEI	GCGC	3 cut(s)	55, 87, 327
AspS9I	GGNCC	1 cut(s)	139
AsuC2I	CCSGG	1 cut(s)	587
AsuHPI	GGTGA	5 cut(s)	16, 127, 134, 346, 475
BaeGI	GKGCMC	1 cut(s)	190
BanI	GGYRCC	2 cut(s)	297, 324
BauI	CACGAG	1 cut(s)	30
Bbv12I	GWGCWC	1 cut(s)	190
BcgI	CGANNNNNNTGC	2 cut(s)	140, 174
BciT130I	CCWGG	1 cut(s)	89
BcnI	CCSGG	1 cut(s)	587
BcoDI	GTCTC	1 cut(s)	320
BfaI	CTAG	2 cut(s)	248, 294
BfoI	RGCGCY	1 cut(s)	328
BisI	GCNGC	1 cut(s)	220
BlsI	GCNGC	1 cut(s)	221
Bme1390I	CCNGG	2 cut(s)	89, 587
BmgBI	CACGTC	1 cut(s)	64
BmgT120I	GGNCC	1 cut(s)	139
BmiI	GGNNCC	5 cut(s)	299, 326, 441, 540, 597
BmrFI	CCNGG	2 cut(s)	89, 587
BmsI	GCATC	2 cut(s)	417, 479
BplI	GAGNNNNNCTC	2 cut(s)	187, 219
BpuMI	CCSGG	1 cut(s)	587
BsaHI	GRCGYC	3 cut(s)	313, 325, 463
BsaJI	CCNNGG	2 cut(s)	88, 223
BsaWI	WCCGGW	2 cut(s)	485, 535
BsaXI	ACNNNNNCTCC	2 cut(s)	303, 333
Bsc4I	CCNNNNNNNGG	3 cut(s)	94, 485, 592
Bse1I	ACTGG	4 cut(s)	99, 395, 450, 467
BseBI	CCWGG	1 cut(s)	89
BseDI	CCNNGG	2 cut(s)	88, 223
BseGI	GGATG	2 cut(s)	52, 494
BseLI	CCNNNNNNNGG	3 cut(s)	94, 485, 592
BseMII	CTCAG	2 cut(s)	47, 185
BseNI	ACTGG	4 cut(s)	99, 395, 450, 467
BseRI	GAGGAG	1 cut(s)	308
BseSI	GKGCMC	1 cut(s)	190
BshFI	GGCC	3 cut(s)	141, 255, 529
BshNI	GGYRCC	2 cut(s)	297, 324
BsiHKAI	GWGCWC	1 cut(s)	190
BsiSI	CCGG	6 cut(s)	322, 486, 536, 542, 586, 599
BslFI	GGGAC	1 cut(s)	105
BslI	CCNNNNNNNGG	3 cut(s)	94, 485, 592
BsmAI	GTCTC	1 cut(s)	320
BsmBI	CGTCTC	1 cut(s)	320
BsmFI	GGGAC	1 cut(s)	105
BsnI	GGCC	3 cut(s)	141, 255, 529
Bsp1286I	GDGCHC	1 cut(s)	190
Bsp143I	GATC	2 cut(s)	343, 580
Bsp19I	CCATGG	1 cut(s)	223
BspACI	CCGC	1 cut(s)	220
BspANI	GGCC	3 cut(s)	141, 255, 529
BspCNI	CTCAG	2 cut(s)	48, 186
BspLI	GGNNCC	5 cut(s)	299, 326, 441, 540, 597
BspPI	GGATC	2 cut(s)	338, 588
BspT107I	GGYRCC	2 cut(s)	297, 324
BsrI	ACTGG	4 cut(s)	99, 395, 450, 467
BssECI	CCNNGG	2 cut(s)	88, 223
BssMI	GATC	2 cut(s)	343, 580
BssNI	GRCGYC	3 cut(s)	313, 325, 463
BssSI	CACGAG	1 cut(s)	30
BssT1I	CCWWGG	1 cut(s)	223
Bst2BI	CACGAG	1 cut(s)	30
Bst2UI	CCWGG	1 cut(s)	89
BstACI	GRCGYC	3 cut(s)	313, 325, 463
BstDEI	CTNAG	4 cut(s)	56, 143, 194, 236
BstDSI	CCRYGG	1 cut(s)	223
BstEII	GGTNACC	1 cut(s)	4
BstF5I	GGATG	2 cut(s)	52, 494
BstH2I	RGCGCY	1 cut(s)	328
BstHHI	GCGC	3 cut(s)	55, 87, 327
BstKTI	GATC	2 cut(s)	346, 583
BstMAI	GTCTC	1 cut(s)	320
BstMBI	GATC	2 cut(s)	343, 580
BstMWI	GCNNNNNNNGC	2 cut(s)	104, 276
BstNI	CCWGG	1 cut(s)	89
BstPI	GGTNACC	1 cut(s)	4
BstSCI	CCNGG	2 cut(s)	87, 585
BstSLI	GKGCMC	1 cut(s)	190
BsuRI	GGCC	3 cut(s)	141, 255, 529
BtgI	CCRYGG	1 cut(s)	223
BtgZI	GCGATG	1 cut(s)	394
BtrI	CACGTC	1 cut(s)	64
BtsCI	GGATG	2 cut(s)	52, 494
BtsIMutI	CAGTG	1 cut(s)	443
CaiI	CAGNNNCTG	1 cut(s)	94
CfoI	GCGC	3 cut(s)	55, 87, 327
Cfr13I	GGNCC	1 cut(s)	139
Csp6I	GTAC	1 cut(s)	470
CviAII	CATG	2 cut(s)	163, 224
CviJI	RGCY	8 cut(s)	98, 141, 255, 279, 423, 442, 529, 598
CviKI_1	RGCY	8 cut(s)	98, 141, 255, 279, 423, 442, 529, 598
CviQI	GTAC	1 cut(s)	470
DdeI	CTNAG	4 cut(s)	56, 143, 194, 236
DinI	GGCGCC	1 cut(s)	326
DpnI	GATC	2 cut(s)	345, 582
DpnII	GATC	2 cut(s)	343, 580
DrdI	GACNNNNNNGTC	1 cut(s)	462
DseDI	GACNNNNNNGTC	1 cut(s)	462
EaeI	YGGCCR	1 cut(s)	527
Eco130I	CCWWGG	1 cut(s)	223
Eco91I	GGTNACC	1 cut(s)	4
EcoO109I	RGGNCCY	1 cut(s)	139
EcoO65I	GGTNACC	1 cut(s)	4
EcoRII	CCWGG	1 cut(s)	87
EcoT14I	CCWWGG	1 cut(s)	223
EgeI	GGCGCC	1 cut(s)	326
EheI	GGCGCC	1 cut(s)	326
ErhI	CCWWGG	1 cut(s)	223
Esp3I	CGTCTC	1 cut(s)	320
FaeI	CATG	2 cut(s)	166, 227
FaiI	YATR	5 cut(s)	81, 164, 225, 231, 564
FaqI	GGGAC	1 cut(s)	105
FatI	CATG	2 cut(s)	162, 223
FblI	GTMKAC	1 cut(s)	310
Fnu4HI	GCNGC	1 cut(s)	220
FokI	GGATG	2 cut(s)	59, 501
Fsp4HI	GCNGC	1 cut(s)	220
FspBI	CTAG	2 cut(s)	248, 294
GlaI	GCGC	3 cut(s)	54, 86, 326
GluI	GCNGC	1 cut(s)	220
HaeII	RGCGCY	1 cut(s)	328
HaeIII	GGCC	3 cut(s)	141, 255, 529
HapII	CCGG	6 cut(s)	322, 486, 536, 542, 586, 599
HhaI	GCGC	3 cut(s)	55, 87, 327
Hin1I	GRCGYC	3 cut(s)	313, 325, 463
Hin1II	CATG	2 cut(s)	166, 227
Hin6I	GCGC	3 cut(s)	53, 85, 325
HinP1I	GCGC	3 cut(s)	53, 85, 325
HincII	GTYRAC	1 cut(s)	311
HindII	GTYRAC	1 cut(s)	311
HinfI	GANTC	6 cut(s)	200, 391, 504, 532, 559, 605
HpaII	CCGG	6 cut(s)	322, 486, 536, 542, 586, 599
HphI	GGTGA	5 cut(s)	16, 127, 134, 346, 475
Hpy166II	GTNNAC	2 cut(s)	188, 311
Hpy188I	TCNGA	2 cut(s)	390, 418
Hpy188III	TCNNGA	2 cut(s)	210, 609
Hpy8I	GTNNAC	2 cut(s)	188, 311
Hpy99I	CGWCG	4 cut(s)	312, 315, 465, 550
HpyAV	CCTTC	3 cut(s)	37, 245, 295
HpyCH4IV	ACGT	3 cut(s)	63, 313, 463
HpyCH4V	TGCA	3 cut(s)	35, 173, 188
HpyF10VI	GCNNNNNNNGC	2 cut(s)	104, 276
HpyF3I	CTNAG	4 cut(s)	56, 143, 194, 236
HpySE526I	ACGT	3 cut(s)	63, 313, 463
Hsp92I	GRCGYC	3 cut(s)	313, 325, 463
Hsp92II	CATG	2 cut(s)	166, 227
HspAI	GCGC	3 cut(s)	53, 85, 325
KasI	GGCGCC	1 cut(s)	324
Kzo9I	GATC	2 cut(s)	343, 580
LmnI	GCTCC	2 cut(s)	439, 595
LweI	GCATC	2 cut(s)	417, 479
MaeI	CTAG	2 cut(s)	248, 294
MaeII	ACGT	3 cut(s)	63, 313, 463
MaeIII	GTNAC	2 cut(s)	4, 59
MalI	GATC	2 cut(s)	345, 582
MboI	GATC	2 cut(s)	343, 580
MboII	GAAGA	1 cut(s)	568
MhlI	GDGCHC	1 cut(s)	190
MluCI	AATT	2 cut(s)	76, 174
Mly113I	GGCGCC	1 cut(s)	325
MnlI	CCTC	8 cut(s)	270, 329, 362, 370, 424, 543, 585, 595
MslI	CAYNNNNRTG	1 cut(s)	228
MspI	CCGG	6 cut(s)	322, 486, 536, 542, 586, 599
MspR9I	CCNGG	2 cut(s)	89, 587
MvaI	CCWGG	1 cut(s)	89
MwoI	GCNNNNNNNGC	2 cut(s)	104, 276
NarI	GGCGCC	1 cut(s)	325
NciI	CCSGG	1 cut(s)	587
NcoI	CCATGG	1 cut(s)	223
NdeII	GATC	2 cut(s)	343, 580
NlaIII	CATG	2 cut(s)	166, 227
NlaIV	GGNNCC	5 cut(s)	299, 326, 441, 540, 597
NmuCI	GTSAC	2 cut(s)	4, 59
PfeI	GAWTC	6 cut(s)	200, 391, 504, 532, 559, 605
PflFI	GACNNNGTC	1 cut(s)	550
PflMI	CCANNNNNTGG	1 cut(s)	94
PkrI	GCNGC	1 cut(s)	221
PluTI	GGCGCC	1 cut(s)	328
Psp6I	CCWGG	1 cut(s)	87
PspEI	GGTNACC	1 cut(s)	4
PspGI	CCWGG	1 cut(s)	87
PspN4I	GGNNCC	5 cut(s)	299, 326, 441, 540, 597
PspPI	GGNCC	1 cut(s)	139
PstNI	CAGNNNCTG	1 cut(s)	94
PsyI	GACNNNGTC	1 cut(s)	550
RsaI	GTAC	1 cut(s)	471
RsaNI	GTAC	1 cut(s)	470
RseI	CAYNNNNRTG	1 cut(s)	228
SalI	GTCGAC	1 cut(s)	309
SatI	GCNGC	1 cut(s)	220
Sau3AI	GATC	2 cut(s)	343, 580
Sau96I	GGNCC	1 cut(s)	139
ScrFI	CCNGG	2 cut(s)	89, 587
SduI	GDGCHC	1 cut(s)	190
SetI	ASST	8 cut(s)	66, 159, 184, 316, 343, 466, 481, 554
SfaNI	GCATC	2 cut(s)	417, 479
SfoI	GGCGCC	1 cut(s)	326
SgrDI	CGTCGACG	1 cut(s)	309
SmiMI	CAYNNNNRTG	1 cut(s)	228
Sse9I	AATT	2 cut(s)	76, 174
SsiI	CCGC	1 cut(s)	220
SspDI	GGCGCC	1 cut(s)	324
SspMI	CTAG	2 cut(s)	248, 294
StyD4I	CCNGG	2 cut(s)	87, 585
StyI	CCWWGG	1 cut(s)	223
TaiI	ACGT	3 cut(s)	66, 316, 466
TaqI	TCGA	4 cut(s)	310, 460, 502, 554
TasI	AATT	2 cut(s)	76, 174
TatI	WGTACW	1 cut(s)	469
TauI	GCSGC	1 cut(s)	222
TfiI	GAWTC	6 cut(s)	200, 391, 504, 532, 559, 605
TscAI	CASTG	1 cut(s)	450
TseFI	GTSAC	2 cut(s)	4, 59
Tsp45I	GTSAC	2 cut(s)	4, 59
TspRI	CASTG	1 cut(s)	450
Tth111I	GACNNNGTC	1 cut(s)	550
Van91I	CCANNNNNTGG	1 cut(s)	94
VneI	GTGCAC	1 cut(s)	186
XcmI	CCANNNNNNNNNTGG	1 cut(s)	95
XmiI	GTMKAC	1 cut(s)	310
XspI	CTAG	2 cut(s)	248, 294
ZraI	GACGTC	2 cut(s)	314, 464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.