Rmu_ssc0000316.1_g000005

WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000316.1
OG0009257
Physical Location & Seq
Reverse (-)
15071 .. 16974
1904 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1605 bp
atggggagctttagcgaagaggaattcgctttttttgatgcccgcgaggatattgcatcagtgtctgatgcaagtcgtgagagcattgaggtgttggaagcgagttcttcttccatgagttgggttccggatagttttccctatgatgtgtgggttagaagcccggggagtgtgaaggagcgtcgggttaagtttctggattggatggaagttagtgcagaggagattgtgggagagaatatggtggaagtgtctagtgatgtggtgggggaaataggtagagttagagagagtagtggggctgtgttgagatccttatcttttgagggggagttttcttcaagtcggtcttcaatgtcgttctgggctaatgaatttagagatgggaatttgagtgggagaatggagtgtaatggagatgaagtagggccggttgggaaggtcagtgaaggtcgagaagttattgaagagtctgagcgcactttgttctcagtatcttcattatctcgtcaattgagtgcagtcaaagctgaagagattagcagtaagggggcgttactgaagagagttaagaagaagtggttgcatagatttcggtccatgacatgccttgatgataggcaagggattgctgacaggtcagcagagaatgataatgatagaattatgggaataaggtcttatagagtgaaggttcgtcattccgggaagcggttgaaggaactctcagctctttatatgggacaggatatccaggcccatgagggttcaattttggccatgaaatttagtcctgatggacagtacctagcaagtgctggtgaagatgggattgtgcgagtctggcaagtggtggagaatcagaggtgtaatgaacttgacattccagagatagatccatcctgcatatacttcaccgtgaatcatctctctgaactaaatccactatttgcggataaagagaaagtgagtaaagcacgtagcatgacgaaaacatcagattcagcatgtgttatttttcccccaaaagtctttcggattgtggacaaaccattgcatgagtttcatgggcatagtggtgagattttggatctctcctggtcaaggaacaattatctactgtcgtcttctgttgacaaaactgttcgtctatggcaagtgggatgcactgattgcctcaaagtatttgcacatagtaattatgtgacctgtgttcaattcaatcctatggatgataactactttatcagtggttcaatagatggcaaacgatgtacgctagaaaatgctaggaacgttggtgtcgtggaaaataatctacctgaaactctacctttttcttcacccgcatgcttttctctgagccaagaatctctccttcagtctattccgaaaggatctgcgacttggcccgaggagaagcttccaacatcaagcgccttgacaaagtcatctactatgcacagatccgagtacaagttttttaaaacttcatgccagagcacatcgagttcccatgcatggggtctggttattgtgaccgcaggttgggatggaaggatcaaatcattccacaattatgggttaccagtacctgttcgatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

534

Amino Acids

59.68

Weight (kDa)

5.64

Isoelectric Point (pI)

52.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_CDC20-Fz PF24807 227 - 291 1.2e-06 CDC20/Fizzy WD40 domain
Beta-prop_WDR3_2nd PF25172 240 - 422 9.2e-13 WDR3 second beta-propeller domain
Beta-prop_THOC3 PF25174 249 - 287 7.5e-08 THOC3 beta-propeller domain
WD40_WDHD1_1st PF24817 250 - 294 1.7e-07 WDHD1 first WD40 domain
WD40 PF00400 251 - 282 6.8e-09 WD domain, G-beta repeat
Beta-prop_WDR5 PF25175 251 - 290 4.9e-07 WDR5 beta-propeller domain
Beta-prop_WDR5 PF25175 344 - 422 2.6e-15 WDR5 beta-propeller domain
WD40_Prp19 PF24814 348 - 423 1.8e-08 Prp19 WD40 domain
WD40 PF00400 350 - 385 8.4e-08 WD domain, G-beta repeat
Beta-prop_WDR3_1st PF25173 351 - 422 2.9e-09 WDR3 first beta-propeller domain
Beta-prop_THOC3 PF25174 352 - 421 1.7e-08 THOC3 beta-propeller domain
WD40_CDC20-Fz PF24807 352 - 419 1.4e-06 CDC20/Fizzy WD40 domain
Beta-prop_WDR36-Utp21_2nd PF25168 352 - 413 2.2e-08 WDR36/Utp21 second beta-propeller domain
Beta-prop_CAF1B_HIR1 PF24105 355 - 438 5.5e-09 CAF1B/HIR1 beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1535
AccB7I CCANNNNNTGG 1 cut(s) 120
AccII CGCG 1 cut(s) 45
AccIII TCCGGA 1 cut(s) 127
AciI CCGC 5 cut(s) 43, 712, 953, 1347, 1542
AclI AACGTT 1 cut(s) 1296
AclWI GGATC 6 cut(s) 306, 890, 1098, 1405, 1461, 1568
AcoI YGGCCR 1 cut(s) 777
AcsI RAATTY 4 cut(s) 23, 374, 388, 785
AcuI CTGAAG 3 cut(s) 552, 581, 1364
AfaI GTAC 4 cut(s) 806, 1276, 1475, 1593
AfiI CCNNNNNNNGG 6 cut(s) 120, 711, 1104, 1521, 1522, 1548
AgsI TTSAA 8 cut(s) 342, 354, 467, 718, 771, 1217, 1222, 1257
AjnI CCWGG 2 cut(s) 753, 1097
AluBI AGCT 4 cut(s) 9, 530, 731, 1423
AluI AGCT 4 cut(s) 9, 530, 731, 1423
Alw21I GWGCWC 1 cut(s) 1505
AlwI GGATC 6 cut(s) 306, 890, 1098, 1405, 1461, 1568
AlwNI CAGNNNCTG 2 cut(s) 65, 1595
Ama87I CYCGRG 2 cut(s) 163, 1412
Aor13HI TCCGGA 1 cut(s) 127
AoxI GGCC 4 cut(s) 428, 756, 777, 1409
ApoI RAATTY 4 cut(s) 23, 374, 388, 785
AspLEI GCGC 2 cut(s) 480, 1439
AspS9I GGNCC 4 cut(s) 428, 597, 757, 1410
AsuC2I CCSGG 3 cut(s) 164, 165, 706
AsuHPI GGTGA 4 cut(s) 833, 907, 1091, 1335
AvaI CYCGRG 2 cut(s) 163, 1412
AvaII GGWCC 1 cut(s) 597
BalI TGGCCA 1 cut(s) 779
BbsI GAAGAC 2 cut(s) 342, 1119
Bbv12I GWGCWC 1 cut(s) 1505
BccI CCATC 7 cut(s) 199, 377, 791, 821, 907, 1256, 1547
BcgI CGANNNNNNTGC 4 cut(s) 35, 69, 575, 609
BciT130I CCWGG 2 cut(s) 755, 1099
BcnI CCSGG 3 cut(s) 164, 165, 706
BfaI CTAG 4 cut(s) 255, 809, 1280, 1290
BfoI RGCGCY 1 cut(s) 1440
BfuAI ACCTGC 1 cut(s) 1535
Bme1390I CCNGG 5 cut(s) 164, 165, 706, 755, 1099
Bme18I GGWCC 1 cut(s) 597
BmeT110I CYCGRG 2 cut(s) 163, 1412
BmgT120I GGNCC 4 cut(s) 428, 597, 757, 1410
BmiI GGNNCC 1 cut(s) 126
BmrFI CCNGG 5 cut(s) 164, 165, 706, 755, 1099
BmsI GCATC 4 cut(s) 28, 58, 65, 1154
BpiI GAAGAC 2 cut(s) 342, 1119
BpuMI CCSGG 3 cut(s) 164, 165, 706
BsaAI YACGTR 1 cut(s) 980
BsaBI GATNNNNATC 1 cut(s) 316
BsaJI CCNNGG 3 cut(s) 163, 164, 1413
BsaWI WCCGGW 1 cut(s) 127
BsaXI ACNNNNNCTCC 2 cut(s) 408, 438
Bsc4I CCNNNNNNNGG 6 cut(s) 120, 711, 1104, 1521, 1522, 1548
Bse118I RCCGGY 1 cut(s) 430
Bse1I ACTGG 1 cut(s) 1589
Bse3DI GCAATG 1 cut(s) 1052
Bse8I GATNNNNATC 1 cut(s) 316
BseAI TCCGGA 1 cut(s) 127
BseBI CCWGG 2 cut(s) 755, 1099
BseDI CCNNGG 3 cut(s) 163, 164, 1413
BseGI GGATG 5 cut(s) 210, 899, 1169, 1237, 1558
BseJI GATNNNNATC 1 cut(s) 316
BseLI CCNNNNNNNGG 6 cut(s) 120, 711, 1104, 1521, 1522, 1548
BseMI GCAATG 1 cut(s) 1052
BseMII CTCAG 4 cut(s) 465, 504, 741, 1352
BseNI ACTGG 1 cut(s) 1589
BseRI GAGGAG 2 cut(s) 236, 1430
BsgI GTGCAG 2 cut(s) 237, 540
Bsh1236I CGCG 1 cut(s) 45
BshFI GGCC 4 cut(s) 430, 758, 779, 1411
BsiHKAI GWGCWC 1 cut(s) 1505
BsiHKCI CYCGRG 2 cut(s) 163, 1412
BsiSI CCGG 4 cut(s) 128, 164, 431, 705
BslFI GGGAC 1 cut(s) 756
BslI CCNNNNNNNGG 6 cut(s) 120, 711, 1104, 1521, 1522, 1548
BsmFI GGGAC 1 cut(s) 756
BsnI GGCC 4 cut(s) 430, 758, 779, 1411
BsoBI CYCGRG 2 cut(s) 163, 1412
Bsp1286I GDGCHC 1 cut(s) 1505
Bsp13I TCCGGA 1 cut(s) 127
Bsp143I GATC 6 cut(s) 311, 895, 1090, 1397, 1466, 1560
BspACI CCGC 5 cut(s) 43, 712, 953, 1347, 1542
BspANI GGCC 4 cut(s) 430, 758, 779, 1411
BspCNI CTCAG 4 cut(s) 466, 503, 740, 1353
BspEI TCCGGA 1 cut(s) 127
BspFNI CGCG 1 cut(s) 45
BspLI GGNNCC 1 cut(s) 126
BspMI ACCTGC 1 cut(s) 1535
BspPI GGATC 6 cut(s) 306, 890, 1098, 1405, 1461, 1568
BsrDI GCAATG 1 cut(s) 1052
BsrFI RCCGGY 1 cut(s) 430
BsrI ACTGG 1 cut(s) 1589
BssAI RCCGGY 1 cut(s) 430
BssECI CCNNGG 3 cut(s) 163, 164, 1413
BssMI GATC 6 cut(s) 311, 895, 1090, 1397, 1466, 1560
Bst2UI CCWGG 2 cut(s) 755, 1099
Bst4CI ACNGT 4 cut(s) 804, 919, 1122, 1144
Bst6I CTCTTC 4 cut(s) 12, 462, 528, 557
BstAPI GCANNNNNTGC 1 cut(s) 1173
BstBAI YACGTR 1 cut(s) 980
BstC8I GCNNGC 2 cut(s) 43, 1351
BstDEI CTNAG 4 cut(s) 474, 490, 727, 1361
BstEII GGTNACC 1 cut(s) 1584
BstENI CCTNNNNNAGG 1 cut(s) 1102
BstF5I GGATG 5 cut(s) 210, 899, 1169, 1237, 1558
BstFNI CGCG 1 cut(s) 45
BstH2I RGCGCY 1 cut(s) 1440
BstHHI GCGC 2 cut(s) 480, 1439
BstKTI GATC 6 cut(s) 314, 898, 1093, 1400, 1469, 1563
BstMBI GATC 6 cut(s) 311, 895, 1090, 1397, 1466, 1560
BstMWI GCNNNNNNNGC 3 cut(s) 527, 844, 1173
BstNI CCWGG 2 cut(s) 755, 1099
BstNSI RCATGY 3 cut(s) 609, 1011, 1353
BstPI GGTNACC 1 cut(s) 1584
BstSCI CCNGG 5 cut(s) 162, 163, 704, 753, 1097
BstUI CGCG 1 cut(s) 45
BstV2I GAAGAC 2 cut(s) 342, 1119
BstX2I RGATCY 5 cut(s) 311, 895, 1090, 1397, 1466
BstXI CCANNNNNNTGG 1 cut(s) 1580
BstYI RGATCY 5 cut(s) 311, 895, 1090, 1397, 1466
BsuRI GGCC 4 cut(s) 430, 758, 779, 1411
BtsCI GGATG 5 cut(s) 210, 899, 1169, 1237, 1558
BtsIMutI CAGTG 4 cut(s) 66, 451, 1167, 1255
BveI ACCTGC 1 cut(s) 1535
Cac8I GCNNGC 2 cut(s) 43, 1351
CaiI CAGNNNCTG 2 cut(s) 65, 1595
CfoI GCGC 2 cut(s) 480, 1439
Cfr10I RCCGGY 1 cut(s) 430
Cfr13I GGNCC 4 cut(s) 428, 597, 757, 1410
Cfr9I CCCGGG 1 cut(s) 163
CseI GACGC 1 cut(s) 170
Csp6I GTAC 4 cut(s) 805, 1275, 1474, 1592
CviQI GTAC 4 cut(s) 805, 1275, 1474, 1592
DdeI CTNAG 4 cut(s) 474, 490, 727, 1361
DpnI GATC 6 cut(s) 313, 897, 1092, 1399, 1468, 1562
DpnII GATC 6 cut(s) 311, 895, 1090, 1397, 1466, 1560
DraI TTTAAA 1 cut(s) 1486
EaeI YGGCCR 1 cut(s) 777
Eam1104I CTCTTC 4 cut(s) 12, 462, 528, 557
EarI CTCTTC 4 cut(s) 12, 462, 528, 557
Eco32I GATATC 1 cut(s) 751
Eco47I GGWCC 1 cut(s) 597
Eco57I CTGAAG 3 cut(s) 552, 581, 1364
Eco88I CYCGRG 2 cut(s) 163, 1412
Eco91I GGTNACC 1 cut(s) 1584
EcoNI CCTNNNNNAGG 1 cut(s) 1102
EcoO65I GGTNACC 1 cut(s) 1584
EcoRI GAATTC 1 cut(s) 23
EcoRII CCWGG 2 cut(s) 753, 1097
EcoRV GATATC 1 cut(s) 751
EcoT22I ATGCAT 1 cut(s) 1522
FalI AAGNNNNNCTT 2 cut(s) 334, 366
FaqI GGGAC 1 cut(s) 756
FauI CCCGC 2 cut(s) 50, 1354
FokI GGATG 5 cut(s) 217, 886, 1176, 1244, 1565
FspBI CTAG 4 cut(s) 255, 809, 1280, 1290
GlaI GCGC 2 cut(s) 479, 1438
HaeII RGCGCY 1 cut(s) 1440
HaeIII GGCC 4 cut(s) 430, 758, 779, 1411
HapII CCGG 4 cut(s) 128, 164, 431, 705
HgaI GACGC 1 cut(s) 170
HhaI GCGC 2 cut(s) 480, 1439
Hin6I GCGC 2 cut(s) 478, 1437
HinP1I GCGC 2 cut(s) 478, 1437
HincII GTYRAC 1 cut(s) 1135
HindII GTYRAC 1 cut(s) 1135
HindIII AAGCTT 1 cut(s) 1421
HinfI GANTC 6 cut(s) 470, 840, 859, 922, 1001, 1370
HpaII CCGG 4 cut(s) 128, 164, 431, 705
HphI GGTGA 4 cut(s) 833, 907, 1091, 1335
Hpy166II GTNNAC 2 cut(s) 1045, 1135
Hpy188I TCNGA 9 cut(s) 67, 475, 864, 934, 1000, 1038, 1362, 1392, 1471
Hpy188III TCNNGA 6 cut(s) 77, 128, 197, 455, 794, 887
Hpy8I GTNNAC 2 cut(s) 1045, 1135
Hpy99I CGWCG 1 cut(s) 186
HpyAV CCTTC 7 cut(s) 169, 433, 443, 685, 712, 1388, 1551
HpyCH4III ACNGT 4 cut(s) 804, 919, 1122, 1144
HpyCH4IV ACGT 2 cut(s) 979, 1296
HpyF10VI GCNNNNNNNGC 3 cut(s) 527, 844, 1173
HpyF3I CTNAG 4 cut(s) 474, 490, 727, 1361
HpySE526I ACGT 2 cut(s) 979, 1296
HspAI GCGC 2 cut(s) 478, 1437
Kpn2I TCCGGA 1 cut(s) 127
Kzo9I GATC 6 cut(s) 311, 895, 1090, 1397, 1466, 1560
LmnI GCTCC 2 cut(s) 6, 178
LweI GCATC 4 cut(s) 28, 58, 65, 1154
MaeI CTAG 4 cut(s) 255, 809, 1280, 1290
MaeII ACGT 2 cut(s) 979, 1296
MaeIII GTNAC 4 cut(s) 555, 1204, 1537, 1584
MalI GATC 6 cut(s) 313, 897, 1092, 1399, 1468, 1562
MboI GATC 6 cut(s) 311, 895, 1090, 1397, 1466, 1560
MfeI CAATTG 1 cut(s) 512
MflI RGATCY 5 cut(s) 311, 895, 1090, 1397, 1466
MhlI GDGCHC 1 cut(s) 1505
MlsI TGGCCA 1 cut(s) 779
MluNI TGGCCA 1 cut(s) 779
MlyI GAGTC 2 cut(s) 479, 849
MmeI TCCRAC 2 cut(s) 75, 1451
MnlI CCTC 9 cut(s) 13, 40, 82, 214, 319, 757, 858, 1187, 1408
Mox20I TGGCCA 1 cut(s) 779
Mph1103I ATGCAT 1 cut(s) 1522
MroI TCCGGA 1 cut(s) 127
MscI TGGCCA 1 cut(s) 779
MseI TTAA 3 cut(s) 189, 570, 1485
MslI CAYNNNNRTG 4 cut(s) 89, 1077, 1348, 1578
Msp20I TGGCCA 1 cut(s) 779
MspI CCGG 4 cut(s) 128, 164, 431, 705
MspR9I CCNGG 5 cut(s) 164, 165, 706, 755, 1099
MunI CAATTG 1 cut(s) 512
MvaI CCWGG 2 cut(s) 755, 1099
MvnI CGCG 1 cut(s) 45
MwoI GCNNNNNNNGC 3 cut(s) 527, 844, 1173
NciI CCSGG 3 cut(s) 164, 165, 706
NdeII GATC 6 cut(s) 311, 895, 1090, 1397, 1466, 1560
NlaIV GGNNCC 1 cut(s) 126
NmuCI GTSAC 2 cut(s) 1204, 1537
NsiI ATGCAT 1 cut(s) 1522
NspI RCATGY 3 cut(s) 609, 1011, 1353
PaeI GCATGC 1 cut(s) 1353
PcsI WCGNNNNNNNCGW 1 cut(s) 1302
PfeI GAWTC 4 cut(s) 859, 922, 1001, 1370
PflFI GACNNNGTC 1 cut(s) 1447
PflMI CCANNNNNTGG 1 cut(s) 120
PfoI TCCNGGA 1 cut(s) 704
PleI GAGTC 2 cut(s) 478, 848
PpsI GAGTC 2 cut(s) 478, 848
Ppu21I YACGTR 1 cut(s) 980
Psp1406I AACGTT 1 cut(s) 1296
Psp6I CCWGG 2 cut(s) 753, 1097
PspEI GGTNACC 1 cut(s) 1584
PspGI CCWGG 2 cut(s) 753, 1097
PspN4I GGNNCC 1 cut(s) 126
PspPI GGNCC 4 cut(s) 428, 597, 757, 1410
PstNI CAGNNNCTG 2 cut(s) 65, 1595
PsuI RGATCY 5 cut(s) 311, 895, 1090, 1397, 1466
PsyI GACNNNGTC 1 cut(s) 1447
RsaI GTAC 4 cut(s) 806, 1276, 1475, 1593
RsaNI GTAC 4 cut(s) 805, 1275, 1474, 1592
RseI CAYNNNNRTG 4 cut(s) 89, 1077, 1348, 1578
SaqAI TTAA 3 cut(s) 189, 570, 1485
Sau3AI GATC 6 cut(s) 311, 895, 1090, 1397, 1466, 1560
Sau96I GGNCC 4 cut(s) 428, 597, 757, 1410
SchI GAGTC 2 cut(s) 479, 849
ScrFI CCNGG 5 cut(s) 164, 165, 706, 755, 1099
SduI GDGCHC 1 cut(s) 1505
SfaNI GCATC 4 cut(s) 28, 58, 65, 1154
SinI GGWCC 1 cut(s) 597
SmaI CCCGGG 1 cut(s) 165
SmiMI CAYNNNNRTG 4 cut(s) 89, 1077, 1348, 1578
SphI GCATGC 1 cut(s) 1353
SsiI CCGC 5 cut(s) 43, 712, 953, 1347, 1542
SspMI CTAG 4 cut(s) 255, 809, 1280, 1290
StyD4I CCNGG 5 cut(s) 162, 163, 704, 753, 1097
TaaI ACNGT 4 cut(s) 804, 919, 1122, 1144
TaiI ACGT 2 cut(s) 982, 1299
TaqI TCGA 3 cut(s) 454, 1508, 1600
TaqII GACCGA 2 cut(s) 336, 585
TatI WGTACW 1 cut(s) 1473
TfiI GAWTC 4 cut(s) 859, 922, 1001, 1370
Tru1I TTAA 3 cut(s) 189, 570, 1485
Tru9I TTAA 3 cut(s) 189, 570, 1485
TscAI CASTG 4 cut(s) 66, 451, 1174, 1255
TseFI GTSAC 2 cut(s) 1204, 1537
Tsp45I GTSAC 2 cut(s) 1204, 1537
TspDTI ATGAA 7 cut(s) 387, 435, 489, 797, 888, 1055, 1482
TspMI CCCGGG 1 cut(s) 163
TspRI CASTG 4 cut(s) 66, 451, 1174, 1255
Tth111I GACNNNGTC 1 cut(s) 1447
Van91I CCANNNNNTGG 1 cut(s) 120
VpaK11BI GGWCC 1 cut(s) 597
XagI CCTNNNNNAGG 1 cut(s) 1102
XapI RAATTY 4 cut(s) 23, 374, 388, 785
XceI RCATGY 3 cut(s) 609, 1011, 1353
XmaI CCCGGG 1 cut(s) 163
XspI CTAG 4 cut(s) 255, 809, 1280, 1290
Zsp2I ATGCAT 1 cut(s) 1522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.