Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000322.1

Orthogroup ID

OG0019956

Physical Location & Seq

Genomic Coordinates Reverse (-)

75125 .. 78318

Gene Structure 3194 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

atgatgcttcattgtcgtggatcagatgaagctgtatcactgtatggttgtataatattgtggttgtgcttgatcaaagtggtgcaagtcaagtcgagagtactgttcatcacatgggttgcacgtgatgtcttgattgtctcctcaacctcaactgacacttttgggggtgcgtggacgagagccacatggctgcttatcgcaagcccttgcctcgtcggagatttgcctctcggatctcccacgagagtactgttcatcacatgggctgcacgtgatgtcttgattgtctcctcaacctcaactgacccttttgggggtgcgtggacgagagccacatggctgcttatcgcaagcccttgcctcgtcggagatttgcctctcggatctccaatacggcgtgccgtttcaggttcggcttcgtatatcgagagaattctctactacaccggaaagatccacgagattcatgaggtcagaggccgagatggattccatggattttttttggtttgggggggagaatggaattaccattcagtttactgcacttggaatgcttatcagattaacattattgaaacccctgatcacgttgatttcaccattgaggtcgagagagcgttgcgtgttcttgatggagccatccttgtcatttgtagcgttggtggtgtacagatcagtcagtcaattactgttgatgggcaaatgaaaaaatacgaggttccaagaattgcatttacaaacaaacttgatcgaatgggagcagatcaatggaaagttctgaatcaggtgccttatgtcaatctgttcatagcatatttccaaataccttatgtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003723 GO:0003746 GO:0003824 GO:0003924 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006412 GO:0006414 GO:0006518 GO:0006807 GO:0008135 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019538 GO:0030554 GO:0032543 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0034645 GO:0035639 GO:0036094 GO:0042221 GO:0043043 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0070125 GO:0071704 GO:0097159 GO:0097367 GO:0140053 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EFG_C EFG_II EFG_IV GTP_EFTU GTP_EFTU_D2

Protein Analysis

280

Amino Acids

31.35

Weight (kDa)

6.99

Isoelectric Point (pI)

28.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GTP_EFTU	PF00009	143 - 265	5.2e-21	Elongation factor Tu GTP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019956)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0273791
rosa_multiflora	Rmu_ssc0000322.1_g000016
rosa_roxburghii	Rroxscaffold_6G00393050
rosa_samantha	Rh5CG259900 Rh6AG192100 Rh6CG195600 Rh6DG187600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	793
AclWI	GGATC	4 cut(s)	28, 244, 394, 451
AcsI	RAATTY	1 cut(s)	435
AcvI	CACGTG	2 cut(s)	125, 275
AfaI	GTAC	3 cut(s)	102, 252, 675
AfiI	CCNNNNNNNGG	2 cut(s)	316, 317
AgsI	TTSAA	1 cut(s)	581
AluBI	AGCT	1 cut(s)	32
AluI	AGCT	1 cut(s)	32
Alw26I	GTCTC	2 cut(s)	145, 295
AlwI	GGATC	4 cut(s)	28, 244, 394, 451
AoxI	GGCC	1 cut(s)	481
ApeKI	GCWGC	3 cut(s)	193, 269, 343
ApoI	RAATTY	1 cut(s)	435
AsuHPI	GGTGA	1 cut(s)	595
BanI	GGYRCC	1 cut(s)	793
BauI	CACGAG	2 cut(s)	244, 461
BbrPI	CACGTG	2 cut(s)	125, 275
BbvI	GCAGC	3 cut(s)	180, 256, 330
BccI	CCATC	4 cut(s)	482, 632, 653, 695
BceAI	ACGGC	2 cut(s)	389, 413
BclI	TGATCA	2 cut(s)	72, 589
BcoDI	GTCTC	2 cut(s)	145, 295
BisI	GCNGC	3 cut(s)	194, 270, 344
BlsI	GCNGC	3 cut(s)	195, 271, 345
BmcAI	AGTACT	2 cut(s)	102, 252
BmiI	GGNNCC	3 cut(s)	643, 726, 795
BsaAI	YACGTR	2 cut(s)	125, 275
BsaJI	CCNNGG	1 cut(s)	496
BsaWI	WCCGGW	1 cut(s)	449
Bsc4I	CCNNNNNNNGG	2 cut(s)	316, 317
BseDI	CCNNGG	1 cut(s)	496
BseGI	GGATG	1 cut(s)	645
BseLI	CCNNNNNNNGG	2 cut(s)	316, 317
BseRI	GAGGAG	2 cut(s)	133, 283
BseXI	GCAGC	3 cut(s)	180, 256, 330
BsgI	GTGCAG	2 cut(s)	255, 532
BshFI	GGCC	1 cut(s)	483
BshNI	GGYRCC	1 cut(s)	793
BsiSI	CCGG	1 cut(s)	450
BslI	CCNNNNNNNGG	2 cut(s)	316, 317
BsmAI	GTCTC	2 cut(s)	145, 295
BsmI	GAATGC	1 cut(s)	562
BsnI	GGCC	1 cut(s)	483
Bsp1407I	TGTACA	1 cut(s)	673
Bsp143I	GATC	9 cut(s)	20, 72, 236, 386, 456, 589, 678, 754, 769
Bsp19I	CCATGG	1 cut(s)	496
BspANI	GGCC	1 cut(s)	483
BspHI	TCATGA	1 cut(s)	469
BspLI	GGNNCC	3 cut(s)	643, 726, 795
BspPI	GGATC	4 cut(s)	28, 244, 394, 451
BspT107I	GGYRCC	1 cut(s)	793
BsrGI	TGTACA	1 cut(s)	673
BssECI	CCNNGG	1 cut(s)	496
BssMI	GATC	9 cut(s)	20, 72, 236, 386, 456, 589, 678, 754, 769
BssSI	CACGAG	2 cut(s)	244, 461
BssT1I	CCWWGG	1 cut(s)	496
Bst2BI	CACGAG	2 cut(s)	244, 461
Bst4CI	ACNGT	4 cut(s)	42, 105, 255, 697
BstAUI	TGTACA	1 cut(s)	673
BstBAI	YACGTR	2 cut(s)	125, 275
BstC8I	GCNNGC	3 cut(s)	205, 355, 402
BstDSI	CCRYGG	1 cut(s)	496
BstF5I	GGATG	1 cut(s)	645
BstKTI	GATC	9 cut(s)	23, 75, 239, 389, 459, 592, 681, 757, 772
BstMAI	GTCTC	2 cut(s)	145, 295
BstMBI	GATC	9 cut(s)	20, 72, 236, 386, 456, 589, 678, 754, 769
BstV1I	GCAGC	3 cut(s)	180, 256, 330
BstX2I	RGATCY	3 cut(s)	236, 386, 456
BstYI	RGATCY	3 cut(s)	236, 386, 456
BsuRI	GGCC	1 cut(s)	483
BtgI	CCRYGG	1 cut(s)	496
BtsCI	GGATG	1 cut(s)	645
BtsIMutI	CAGTG	1 cut(s)	38
Cac8I	GCNNGC	3 cut(s)	205, 355, 402
CciI	TCATGA	1 cut(s)	469
Csp6I	GTAC	3 cut(s)	101, 251, 674
CviAII	CATG	6 cut(s)	114, 189, 264, 339, 470, 497
CviQI	GTAC	3 cut(s)	101, 251, 674
DpnI	GATC	9 cut(s)	22, 74, 238, 388, 458, 591, 680, 756, 771
DpnII	GATC	9 cut(s)	20, 72, 236, 386, 456, 589, 678, 754, 769
Eco130I	CCWWGG	1 cut(s)	496
Eco72I	CACGTG	2 cut(s)	125, 275
EcoRI	GAATTC	1 cut(s)	435
EcoT14I	CCWWGG	1 cut(s)	496
ErhI	CCWWGG	1 cut(s)	496
FaeI	CATG	6 cut(s)	117, 192, 267, 342, 473, 500
FatI	CATG	6 cut(s)	113, 188, 263, 338, 469, 496
FbaI	TGATCA	2 cut(s)	72, 589
Fnu4HI	GCNGC	3 cut(s)	194, 270, 344
FokI	GGATG	1 cut(s)	632
Fsp4HI	GCNGC	3 cut(s)	194, 270, 344
GluI	GCNGC	3 cut(s)	194, 270, 344
HaeIII	GGCC	1 cut(s)	483
HapII	CCGG	1 cut(s)	450
Hin1II	CATG	6 cut(s)	117, 192, 267, 342, 473, 500
HinfI	GANTC	3 cut(s)	466, 492, 787
HpaII	CCGG	1 cut(s)	450
HphI	GGTGA	1 cut(s)	595
Hpy166II	GTNNAC	4 cut(s)	177, 327, 544, 674
Hpy188I	TCNGA	8 cut(s)	25, 221, 236, 371, 386, 479, 567, 786
Hpy188III	TCNNGA	7 cut(s)	96, 133, 283, 430, 470, 616, 635
Hpy8I	GTNNAC	4 cut(s)	177, 327, 544, 674
Hpy99I	CGWCG	2 cut(s)	221, 371
HpyCH4III	ACNGT	4 cut(s)	42, 105, 255, 697
HpyCH4IV	ACGT	3 cut(s)	124, 274, 594
HpyCH4V	TGCA	5 cut(s)	85, 122, 272, 549, 737
HpySE526I	ACGT	3 cut(s)	124, 274, 594
Hsp92II	CATG	6 cut(s)	117, 192, 267, 342, 473, 500
Ksp22I	TGATCA	2 cut(s)	72, 589
Kzo9I	GATC	9 cut(s)	20, 72, 236, 386, 456, 589, 678, 754, 769
LmnI	GCTCC	2 cut(s)	641, 764
LpnPI	CCDG	4 cut(s)	396, 463, 600, 776
Lsp1109I	GCAGC	3 cut(s)	180, 256, 330
MaeII	ACGT	3 cut(s)	124, 274, 594
MalI	GATC	9 cut(s)	22, 74, 238, 388, 458, 591, 680, 756, 771
MboI	GATC	9 cut(s)	20, 72, 236, 386, 456, 589, 678, 754, 769
MflI	RGATCY	3 cut(s)	236, 386, 456
MluCI	AATT	4 cut(s)	435, 529, 690, 732
MmeI	TCCRAC	2 cut(s)	199, 349
MseI	TTAA	1 cut(s)	570
MslI	CAYNNNNRTG	1 cut(s)	15
MspI	CCGG	1 cut(s)	450
Mva1269I	GAATGC	1 cut(s)	562
NcoI	CCATGG	1 cut(s)	496
NdeII	GATC	9 cut(s)	20, 72, 236, 386, 456, 589, 678, 754, 769
NlaIII	CATG	6 cut(s)	117, 192, 267, 342, 473, 500
NlaIV	GGNNCC	3 cut(s)	643, 726, 795
NmeAIII	GCCGAG	1 cut(s)	509
PagI	TCATGA	1 cut(s)	469
PctI	GAATGC	1 cut(s)	562
PfeI	GAWTC	3 cut(s)	466, 492, 787
PkrI	GCNGC	3 cut(s)	195, 271, 345
PmaCI	CACGTG	2 cut(s)	125, 275
PmlI	CACGTG	2 cut(s)	125, 275
Ppu21I	YACGTR	2 cut(s)	125, 275
PspCI	CACGTG	2 cut(s)	125, 275
PspN4I	GGNNCC	3 cut(s)	643, 726, 795
PsuI	RGATCY	3 cut(s)	236, 386, 456
RsaI	GTAC	3 cut(s)	102, 252, 675
RsaNI	GTAC	3 cut(s)	101, 251, 674
RseI	CAYNNNNRTG	1 cut(s)	15
SaqAI	TTAA	1 cut(s)	570
SatI	GCNGC	3 cut(s)	194, 270, 344
Sau3AI	GATC	9 cut(s)	20, 72, 236, 386, 456, 589, 678, 754, 769
ScaI	AGTACT	2 cut(s)	102, 252
SmiMI	CAYNNNNRTG	1 cut(s)	15
Sse9I	AATT	4 cut(s)	435, 529, 690, 732
SspI	AATATT	1 cut(s)	57
StyI	CCWWGG	1 cut(s)	496
TaaI	ACNGT	4 cut(s)	42, 105, 255, 697
TaiI	ACGT	3 cut(s)	127, 277, 597
TaqI	TCGA	4 cut(s)	95, 429, 615, 757
TasI	AATT	4 cut(s)	435, 529, 690, 732
TatI	WGTACW	3 cut(s)	100, 250, 673
TfiI	GAWTC	3 cut(s)	466, 492, 787
Tru1I	TTAA	1 cut(s)	570
Tru9I	TTAA	1 cut(s)	570
TscAI	CASTG	1 cut(s)	45
TseI	GCWGC	3 cut(s)	193, 269, 343
TspDTI	ATGAA	6 cut(s)	42, 97, 247, 458, 725, 802
TspRI	CASTG	1 cut(s)	45
XapI	RAATTY	1 cut(s)	435
ZrmI	AGTACT	2 cut(s)	102, 252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.