Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000393.1

Orthogroup ID

OG0014150

Physical Location & Seq

Genomic Coordinates Forward (+)

148622 .. 152114

Gene Structure 3493 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

atgaccttcaacattcacggcggctacttggaggccatcgtccggggacaccgtgccggtcttctcaccgccgctgattacaacaacctctgccagtgcgagaccctcgacgacattaagatgcacctctctgccaccgagtacggcccctacctccaaaacgaaccatctccattgcatacaactaccattgtggaaaagtgcactcttaagttggttgatgagtacaagcacatgctatgccaagccacagagcccttgtcaacatttttggagtatatcacatatggtcatatgatagacaatgttgtcctgatcgttactggaactttgcatgagagagatgtccaggaactattggaaaaatgccaccctttgggcatgtttgacagcattgctaccctggcagttgcacagaatatgcgggagctttacagattggtgcttgttgacacacctcttgctccttacttttctgaatgcattacatcagaggatctggatgacatgaatattgaaatcatgaggaatactctttacaaggcataccttgaagatttttacaggttttgtcagaaactcggtggtgccacagcagagatcatgtctgacttacttgcttttgaagctgacagaagggctgtcaatattaccataaacagcattggaacagagcttactcgagatgatcgcaagaaattgtattctagctttggcttactctatccctatggccacgaggaacttgctatctgtgaggacattgatcaggttcgtggtgtcatggaaaagtatcctccttatcagtctatattttcaaaactatcttatggagagagccagatgcttgacaaggcattttatgaagaggaggtgaaaaggctttgtttagcatttgagcaacagtttcattatggcgtcttctttgcgtacatgaggttgagggagcaggagatcagaaatctgatgtggatatccgagtgtgtggctcagaaccagaagtccagagttcatgacagcgtggtcttcatattttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005773 GO:0005774 GO:0005794 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006885 GO:0007034 GO:0007035 GO:0008150 GO:0008324 GO:0008553 GO:0009506 GO:0009987 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0015672 GO:0016020 GO:0016462 GO:0016469 GO:0016471 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019725 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030003 GO:0030004 GO:0030054 GO:0030641 GO:0031090 GO:0032991 GO:0033176 GO:0034220 GO:0036442 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0045851 GO:0046961 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051452 GO:0051453 GO:0055044 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098796 GO:0098805 GO:0098852 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04142 ko04145 ko04721 ko04966 ko05110 ko05120 ko05152 ko05203 ko05323 map00190 map01100 map04142 map04145 map04721 map04966 map05110 map05120 map05152 map05203 map05323

Pfam Domains

Protein Families

vATP-synt_AC39

Protein Analysis

345

Amino Acids

39.91

Weight (kDa)

4.94

Isoelectric Point (pI)

44.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
vATP-synt_AC39	PF01992	10 - 338	2e-108	ATP synthase (C/AC39) subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014150)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28710 AT3G28715 AT3G28715
fragaria_vesca	FvH4_6g49160
malus_domestica	MD09G1048000.v1.1 MD17G1048200.v1.1
prunus_persica	Prupe.3G271000_v2.0.a1 Prupe.3G271000_v2.0.a1
pyrus_communis	pycom17g04290
rosa_chinensis	RchiOBHm_Chr2g0169031
rosa_laevigata	RLG00000021825
rosa_multiflora	Rmu_ssc0000393.1_g000024
rosa_roxburghii	Rroxscaffold_2G00082520
rosa_rugosa	Rorug02G0536500
rosa_samantha	Rh2AG607900 Rh2CG589500
rosa_wichuraiana	Rw2G050410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	308, 1022
AccB1I	GGYRCC	1 cut(s)	587
AccB7I	CCANNNNNTGG	1 cut(s)	376
AciI	CCGC	4 cut(s)	21, 69, 72, 424
AclWI	GGATC	1 cut(s)	504
AcoI	YGGCCR	1 cut(s)	733
AcyI	GRCGYC	1 cut(s)	918
AfaI	GTAC	3 cut(s)	143, 227, 932
AfiI	CCNNNNNNNGG	2 cut(s)	42, 376
AflII	CTTAAG	1 cut(s)	209
AgsI	TTSAA	5 cut(s)	10, 518, 554, 626, 819
AjnI	CCWGG	2 cut(s)	348, 402
AloI	GAACNNNNNNTCC	2 cut(s)	986, 1018
AluBI	AGCT	4 cut(s)	430, 629, 676, 711
AluI	AGCT	4 cut(s)	430, 629, 676, 711
Alw21I	GWGCWC	1 cut(s)	206
Alw26I	GTCTC	1 cut(s)	95
Alw44I	GTGCAC	1 cut(s)	202
AlwI	GGATC	1 cut(s)	504
Ama87I	CYCGRG	1 cut(s)	681
AoxI	GGCC	3 cut(s)	33, 145, 733
ApaLI	GTGCAC	1 cut(s)	202
AspS9I	GGNCC	1 cut(s)	146
AsuC2I	CCSGG	1 cut(s)	44
AsuHPI	GGTGA	2 cut(s)	58, 886
AvaI	CYCGRG	1 cut(s)	681
BaeGI	GKGCMC	1 cut(s)	206
BalI	TGGCCA	1 cut(s)	735
BanI	GGYRCC	1 cut(s)	587
BanII	GRGCYC	1 cut(s)	258
BauI	CACGAG	1 cut(s)	737
BbsI	GAAGAC	3 cut(s)	53, 913, 1018
Bbv12I	GWGCWC	1 cut(s)	206
BccI	CCATC	2 cut(s)	44, 175
BceAI	ACGGC	2 cut(s)	34, 160
BcgI	CGANNNNNNTGC	2 cut(s)	728, 762
BciT130I	CCWGG	2 cut(s)	350, 404
BciVI	GTATCC	1 cut(s)	804
BclI	TGATCA	1 cut(s)	766
BcnI	CCSGG	1 cut(s)	44
BcoDI	GTCTC	1 cut(s)	95
BfaI	CTAG	1 cut(s)	708
BfrI	CTTAAG	1 cut(s)	209
BfuI	GTATCC	1 cut(s)	804
BisI	GCNGC	2 cut(s)	22, 72
BlsI	GCNGC	2 cut(s)	23, 73
Bme1390I	CCNGG	3 cut(s)	44, 350, 404
BmeT110I	CYCGRG	1 cut(s)	681
BmgT120I	GGNCC	1 cut(s)	146
BmiI	GGNNCC	2 cut(s)	148, 589
BmrFI	CCNGG	3 cut(s)	44, 350, 404
BmsI	GCATC	2 cut(s)	111, 834
BpiI	GAAGAC	3 cut(s)	53, 913, 1018
BplI	GAGNNNNNCTC	2 cut(s)	517, 549
BpuMI	CCSGG	1 cut(s)	44
BsaHI	GRCGYC	1 cut(s)	918
BsaI	GGTCTC	1 cut(s)	95
BsaJI	CCNNGG	2 cut(s)	43, 402
Bsc4I	CCNNNNNNNGG	2 cut(s)	42, 376
Bse118I	RCCGGY	1 cut(s)	56
Bse1I	ACTGG	2 cut(s)	94, 328
Bse3DI	GCAATG	2 cut(s)	173, 393
BseBI	CCWGG	2 cut(s)	350, 404
BseDI	CCNNGG	2 cut(s)	43, 402
BseGI	GGATG	1 cut(s)	508
BseLI	CCNNNNNNNGG	2 cut(s)	42, 376
BseMI	GCAATG	2 cut(s)	173, 393
BseMII	CTCAG	1 cut(s)	1004
BseNI	ACTGG	2 cut(s)	94, 328
BseRI	GAGGAG	1 cut(s)	884
BseSI	GKGCMC	1 cut(s)	206
BshFI	GGCC	3 cut(s)	35, 147, 735
BshNI	GGYRCC	1 cut(s)	587
BsiHKAI	GWGCWC	1 cut(s)	206
BsiHKCI	CYCGRG	1 cut(s)	681
BsiSI	CCGG	2 cut(s)	43, 57
BslFI	GGGAC	1 cut(s)	60
BslI	CCNNNNNNNGG	2 cut(s)	42, 376
BsmAI	GTCTC	1 cut(s)	95
BsmFI	GGGAC	1 cut(s)	60
BsmI	GAATGC	1 cut(s)	485
BsnI	GGCC	3 cut(s)	35, 147, 735
Bso31I	GGTCTC	1 cut(s)	95
BsoBI	CYCGRG	1 cut(s)	681
Bsp1286I	GDGCHC	2 cut(s)	206, 258
Bsp143I	GATC	6 cut(s)	315, 496, 600, 688, 766, 954
BspACI	CCGC	4 cut(s)	21, 69, 72, 424
BspANI	GGCC	3 cut(s)	35, 147, 735
BspCNI	CTCAG	1 cut(s)	1003
BspHI	TCATGA	2 cut(s)	522, 1012
BspLI	GGNNCC	2 cut(s)	148, 589
BspPI	GGATC	1 cut(s)	504
BspT107I	GGYRCC	1 cut(s)	587
BspTI	CTTAAG	1 cut(s)	209
BspTNI	GGTCTC	1 cut(s)	95
BsrDI	GCAATG	2 cut(s)	173, 393
BsrFI	RCCGGY	1 cut(s)	56
BsrI	ACTGG	2 cut(s)	94, 328
BssAI	RCCGGY	1 cut(s)	56
BssECI	CCNNGG	2 cut(s)	43, 402
BssMI	GATC	6 cut(s)	315, 496, 600, 688, 766, 954
BssNI	GRCGYC	1 cut(s)	918
BssSI	CACGAG	1 cut(s)	737
Bst2BI	CACGAG	1 cut(s)	737
Bst2UI	CCWGG	2 cut(s)	350, 404
Bst4CI	ACNGT	2 cut(s)	53, 906
Bst6I	CTCTTC	1 cut(s)	861
BstACI	GRCGYC	1 cut(s)	918
BstAFI	CTTAAG	1 cut(s)	209
BstDEI	CTNAG	1 cut(s)	990
BstF5I	GGATG	1 cut(s)	508
BstKTI	GATC	6 cut(s)	318, 499, 603, 691, 769, 957
BstMAI	GTCTC	1 cut(s)	95
BstMBI	GATC	6 cut(s)	315, 496, 600, 688, 766, 954
BstMWI	GCNNNNNNNGC	2 cut(s)	404, 626
BstNI	CCWGG	2 cut(s)	350, 404
BstNSI	RCATGY	2 cut(s)	238, 385
BstSCI	CCNGG	3 cut(s)	42, 348, 402
BstSLI	GKGCMC	1 cut(s)	206
BstV2I	GAAGAC	3 cut(s)	53, 913, 1018
BstX2I	RGATCY	1 cut(s)	496
BstYI	RGATCY	1 cut(s)	496
BsuI	GTATCC	1 cut(s)	804
BsuRI	GGCC	3 cut(s)	35, 147, 735
BtsCI	GGATG	1 cut(s)	508
BtsIMutI	CAGTG	1 cut(s)	101
CciI	TCATGA	2 cut(s)	522, 1012
Cfr10I	RCCGGY	1 cut(s)	56
Cfr13I	GGNCC	1 cut(s)	146
CseI	GACGC	1 cut(s)	907
Csp6I	GTAC	3 cut(s)	142, 226, 931
CviAII	CATG	9 cut(s)	235, 335, 382, 508, 523, 604, 784, 934, 1013
CviQI	GTAC	3 cut(s)	142, 226, 931
DdeI	CTNAG	1 cut(s)	990
DpnI	GATC	6 cut(s)	317, 498, 602, 690, 768, 956
DpnII	GATC	6 cut(s)	315, 496, 600, 688, 766, 954
DrdI	GACNNNNNNGTC	2 cut(s)	308, 1022
DseDI	GACNNNNNNGTC	2 cut(s)	308, 1022
EaeI	YGGCCR	1 cut(s)	733
Eam1104I	CTCTTC	1 cut(s)	861
EarI	CTCTTC	1 cut(s)	861
Eco24I	GRGCYC	1 cut(s)	258
Eco31I	GGTCTC	1 cut(s)	95
Eco32I	GATATC	1 cut(s)	975
Eco88I	CYCGRG	1 cut(s)	681
EcoRII	CCWGG	2 cut(s)	348, 402
EcoRV	GATATC	1 cut(s)	975
EcoT22I	ATGCAT	1 cut(s)	485
EcoT38I	GRGCYC	1 cut(s)	258
FaeI	CATG	9 cut(s)	238, 338, 385, 511, 526, 607, 787, 937, 1016
FaqI	GGGAC	1 cut(s)	60
FatI	CATG	9 cut(s)	234, 334, 381, 507, 522, 603, 783, 933, 1012
FauI	CCCGC	1 cut(s)	417
FauNDI	CATATG	2 cut(s)	286, 294
FbaI	TGATCA	1 cut(s)	766
Fnu4HI	GCNGC	2 cut(s)	22, 72
FokI	GGATG	1 cut(s)	515
FriOI	GRGCYC	1 cut(s)	258
Fsp4HI	GCNGC	2 cut(s)	22, 72
FspBI	CTAG	1 cut(s)	708
GluI	GCNGC	2 cut(s)	22, 72
HaeIII	GGCC	3 cut(s)	35, 147, 735
HapII	CCGG	2 cut(s)	43, 57
HgaI	GACGC	1 cut(s)	907
Hin1I	GRCGYC	1 cut(s)	918
Hin1II	CATG	9 cut(s)	238, 338, 385, 511, 526, 607, 787, 937, 1016
HincII	GTYRAC	2 cut(s)	264, 451
HindII	GTYRAC	2 cut(s)	264, 451
HpaII	CCGG	2 cut(s)	43, 57
HphI	GGTGA	2 cut(s)	58, 886
Hpy166II	GTNNAC	3 cut(s)	204, 264, 451
Hpy188I	TCNGA	8 cut(s)	478, 493, 576, 610, 959, 966, 979, 993
Hpy188III	TCNNGA	6 cut(s)	313, 500, 523, 683, 1005, 1013
Hpy8I	GTNNAC	3 cut(s)	204, 264, 451
Hpy99I	CGWCG	1 cut(s)	113
HpyAV	CCTTC	2 cut(s)	16, 630
HpyCH4III	ACNGT	2 cut(s)	53, 906
HpyCH4V	TGCA	6 cut(s)	124, 178, 204, 334, 413, 483
HpyF10VI	GCNNNNNNNGC	2 cut(s)	404, 626
HpyF3I	CTNAG	1 cut(s)	990
Hsp92I	GRCGYC	1 cut(s)	918
Hsp92II	CATG	9 cut(s)	238, 338, 385, 511, 526, 607, 787, 937, 1016
Ksp22I	TGATCA	1 cut(s)	766
Kzo9I	GATC	6 cut(s)	315, 496, 600, 688, 766, 954
LmnI	GCTCC	3 cut(s)	427, 469, 946
LweI	GCATC	2 cut(s)	111, 834
MaeI	CTAG	1 cut(s)	708
MaeIII	GTNAC	1 cut(s)	319
MalI	GATC	6 cut(s)	317, 498, 602, 690, 768, 956
MboI	GATC	6 cut(s)	315, 496, 600, 688, 766, 954
MboII	GAAGA	5 cut(s)	53, 566, 878, 913, 1018
MflI	RGATCY	1 cut(s)	496
MhlI	GDGCHC	2 cut(s)	206, 258
MlsI	TGGCCA	1 cut(s)	735
MluCI	AATT	1 cut(s)	698
MluNI	TGGCCA	1 cut(s)	735
Mox20I	TGGCCA	1 cut(s)	735
Mph1103I	ATGCAT	1 cut(s)	485
MscI	TGGCCA	1 cut(s)	735
MseI	TTAA	2 cut(s)	117, 210
MslI	CAYNNNNRTG	1 cut(s)	119
Msp20I	TGGCCA	1 cut(s)	735
MspA1I	CMGCKG	1 cut(s)	74
MspCI	CTTAAG	1 cut(s)	209
MspI	CCGG	2 cut(s)	43, 57
MspR9I	CCNGG	3 cut(s)	44, 350, 404
Mva1269I	GAATGC	1 cut(s)	485
MvaI	CCWGG	2 cut(s)	350, 404
MwoI	GCNNNNNNNGC	2 cut(s)	404, 626
NciI	CCSGG	1 cut(s)	44
NdeI	CATATG	2 cut(s)	286, 294
NdeII	GATC	6 cut(s)	315, 496, 600, 688, 766, 954
NlaIII	CATG	9 cut(s)	238, 338, 385, 511, 526, 607, 787, 937, 1016
NlaIV	GGNNCC	2 cut(s)	148, 589
NsiI	ATGCAT	1 cut(s)	485
NspI	RCATGY	2 cut(s)	238, 385
PaeR7I	CTCGAG	1 cut(s)	681
PagI	TCATGA	2 cut(s)	522, 1012
PctI	GAATGC	1 cut(s)	485
PflMI	CCANNNNNTGG	1 cut(s)	376
PfoI	TCCNGGA	1 cut(s)	348
PkrI	GCNGC	2 cut(s)	23, 73
Psp6I	CCWGG	2 cut(s)	348, 402
PspGI	CCWGG	2 cut(s)	348, 402
PspN4I	GGNNCC	2 cut(s)	148, 589
PspPI	GGNCC	1 cut(s)	146
PsrI	GAACNNNNNNTAC	2 cut(s)	661, 693
PsuI	RGATCY	1 cut(s)	496
RsaI	GTAC	3 cut(s)	143, 227, 932
RsaNI	GTAC	3 cut(s)	142, 226, 931
RseI	CAYNNNNRTG	1 cut(s)	119
SaqAI	TTAA	2 cut(s)	117, 210
SatI	GCNGC	2 cut(s)	22, 72
Sau3AI	GATC	6 cut(s)	315, 496, 600, 688, 766, 954
Sau96I	GGNCC	1 cut(s)	146
ScrFI	CCNGG	3 cut(s)	44, 350, 404
SduI	GDGCHC	2 cut(s)	206, 258
SfaNI	GCATC	2 cut(s)	111, 834
Sfr274I	CTCGAG	1 cut(s)	681
SlaI	CTCGAG	1 cut(s)	681
SmiMI	CAYNNNNRTG	1 cut(s)	119
SmlI	CTYRAG	2 cut(s)	209, 681
SmoI	CTYRAG	2 cut(s)	209, 681
Sse9I	AATT	1 cut(s)	698
SsiI	CCGC	4 cut(s)	21, 69, 72, 424
SspI	AATATT	2 cut(s)	514, 649
SspMI	CTAG	1 cut(s)	708
StyD4I	CCNGG	3 cut(s)	42, 348, 402
TaaI	ACNGT	2 cut(s)	53, 906
TaqI	TCGA	2 cut(s)	108, 682
TasI	AATT	1 cut(s)	698
TatI	WGTACW	1 cut(s)	225
TauI	GCSGC	2 cut(s)	24, 74
Tru1I	TTAA	2 cut(s)	117, 210
Tru9I	TTAA	2 cut(s)	117, 210
TscAI	CASTG	1 cut(s)	101
TspDTI	ATGAA	5 cut(s)	524, 879, 899, 1001, 1018
TspRI	CASTG	1 cut(s)	101
Van91I	CCANNNNNTGG	1 cut(s)	376
Vha464I	CTTAAG	1 cut(s)	209
VneI	GTGCAC	1 cut(s)	202
XceI	RCATGY	2 cut(s)	238, 385
XhoI	CTCGAG	1 cut(s)	681
XspI	CTAG	1 cut(s)	708
Zsp2I	ATGCAT	1 cut(s)	485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.