Rmu_ssc0000432.1_g000043

Belongs to the mannose-6-phosphate isomerase type 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000432.1
OG0018644
Physical Location & Seq
Reverse (-)
151474 .. 153945
2472 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 699 bp
atgtcaaatcctggttccgcccctgcggggcaacatcagttcatcattgatcctgaaatactaattgtttttaataaaccttgtatgtgcctccatgatcggcatcgtaaccatcagacgaggcagttgacagagaaggaagagctggtgttgcaattggaaaagcaatatccagatgatgtgggcgttatatctgccttctttctcaaccatgtcaaccttaatcctggagaagcactataccttggagcaaatgaaccccatgcctatttatccggcgactgcatcgagtgcatggcaagctcggacaacgtagtgagggccggccttactcccaagcatcgggatattaaaaccctttgttctatgctcacatacaaacagggctttcctgaaatcctacgaggagattctataaatccttatgtaacaaggtacgtcccaccttttgaagaatttgaggttgatcgatgtcatcttcctgaaggaaaatccacagaattttctgcaagcccaggtccttccctttttgtggtaacttttggagtgggagcaatatatacaagtggtacaaaatatggtatcacccgaggagacgttctttttgcacccgctgacactgagatgagcataagaagtgaatctgagttgcagatatatagagccggagtgaacagcaagttccttcgagcgtcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000032 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004476 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005996 GO:0006056 GO:0006057 GO:0006082 GO:0006139 GO:0006464 GO:0006486 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006807 GO:0007275 GO:0007584 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009108 GO:0009110 GO:0009225 GO:0009226 GO:0009298 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009636 GO:0009642 GO:0009646 GO:0009743 GO:0009744 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0010154 GO:0014070 GO:0016043 GO:0016051 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0017085 GO:0018130 GO:0019438 GO:0019538 GO:0019673 GO:0019752 GO:0019852 GO:0019853 GO:0022414 GO:0031505 GO:0031506 GO:0031667 GO:0032025 GO:0032501 GO:0032502 GO:0033273 GO:0033591 GO:0034284 GO:0034285 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042221 GO:0042364 GO:0042493 GO:0042546 GO:0043170 GO:0043412 GO:0043413 GO:0043436 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045229 GO:0046364 GO:0046394 GO:0046483 GO:0046680 GO:0046686 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0061458 GO:0070085 GO:0070589 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071852 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko00051 ko00520 ko01100 ko01110 ko01130 map00051 map00520 map01100 map01110 map01130
Pfam Domains
Protein Families
PMI_typeI

Protein Analysis

232

Amino Acids

25.8

Weight (kDa)

5.61

Isoelectric Point (pI)

50.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 18, 26, 612
AclWI GGATC 1 cut(s) 44
AcsI RAATTY 2 cut(s) 455, 500
AcuI CTGAAG 1 cut(s) 504
AfaI GTAC 2 cut(s) 437, 571
AfiI CCNNNNNNNGG 3 cut(s) 27, 342, 532
AgsI TTSAA 1 cut(s) 452
AjnI CCWGG 3 cut(s) 10, 226, 514
AluBI AGCT 2 cut(s) 145, 303
AluI AGCT 2 cut(s) 145, 303
Alw26I GTCTC 1 cut(s) 588
AlwI GGATC 1 cut(s) 44
Ama87I CYCGRG 1 cut(s) 588
AoxI GGCC 2 cut(s) 321, 325
ApoI RAATTY 2 cut(s) 455, 500
ArsI GACNNNNNNTTYG 2 cut(s) 587, 619
AspS9I GGNCC 2 cut(s) 321, 518
AsuHPI GGTGA 1 cut(s) 577
AvaI CYCGRG 1 cut(s) 588
AvaII GGWCC 1 cut(s) 518
BccI CCATC 1 cut(s) 120
BciT130I CCWGG 3 cut(s) 12, 228, 516
BcoDI GTCTC 1 cut(s) 588
Bme1390I CCNGG 3 cut(s) 12, 228, 516
Bme18I GGWCC 1 cut(s) 518
BmeT110I CYCGRG 1 cut(s) 588
BmgT120I GGNCC 2 cut(s) 321, 518
BmiI GGNNCC 1 cut(s) 16
BmrFI CCNGG 3 cut(s) 12, 228, 516
BmsI GCATC 3 cut(s) 112, 294, 349
BpmI CTGGAG 1 cut(s) 249
Bsa29I ATCGAT 1 cut(s) 469
BsaBI GATNNNNATC 1 cut(s) 102
BsaJI CCNNGG 3 cut(s) 244, 514, 589
Bsc4I CCNNNNNNNGG 3 cut(s) 27, 342, 532
Bse118I RCCGGY 1 cut(s) 323
Bse8I GATNNNNATC 1 cut(s) 102
BseBI CCWGG 3 cut(s) 12, 228, 516
BseCI ATCGAT 1 cut(s) 469
BseDI CCNNGG 3 cut(s) 244, 514, 589
BseJI GATNNNNATC 1 cut(s) 102
BseLI CCNNNNNNNGG 3 cut(s) 27, 342, 532
BseMII CTCAG 2 cut(s) 612, 636
BseRI GAGGAG 2 cut(s) 420, 606
BshFI GGCC 2 cut(s) 323, 327
BshVI ATCGAT 1 cut(s) 469
BsiHKCI CYCGRG 1 cut(s) 588
BsiSI CCGG 3 cut(s) 276, 324, 666
BslFI GGGAC 1 cut(s) 425
BslI CCNNNNNNNGG 3 cut(s) 27, 342, 532
BsmAI GTCTC 1 cut(s) 588
BsmBI CGTCTC 1 cut(s) 588
BsmFI GGGAC 1 cut(s) 425
BsnI GGCC 2 cut(s) 323, 327
BsoBI CYCGRG 1 cut(s) 588
Bsp143I GATC 3 cut(s) 49, 97, 466
BspACI CCGC 3 cut(s) 18, 26, 612
BspANI GGCC 2 cut(s) 323, 327
BspCNI CTCAG 2 cut(s) 613, 637
BspDI ATCGAT 1 cut(s) 469
BspLI GGNNCC 1 cut(s) 16
BspPI GGATC 1 cut(s) 44
BspQI GCTCTTC 1 cut(s) 135
BsrFI RCCGGY 1 cut(s) 323
BssAI RCCGGY 1 cut(s) 323
BssECI CCNNGG 3 cut(s) 244, 514, 589
BssMI GATC 3 cut(s) 49, 97, 466
BssT1I CCWWGG 1 cut(s) 244
Bst2UI CCWGG 3 cut(s) 12, 228, 516
Bst6I CTCTTC 1 cut(s) 135
BstAPI GCANNNNNTGC 1 cut(s) 291
BstC8I GCNNGC 3 cut(s) 301, 325, 511
BstDEI CTNAG 2 cut(s) 621, 645
BstKTI GATC 3 cut(s) 52, 100, 469
BstMAI GTCTC 1 cut(s) 588
BstMBI GATC 3 cut(s) 49, 97, 466
BstMWI GCNNNNNNNGC 3 cut(s) 151, 291, 300
BstNI CCWGG 3 cut(s) 12, 228, 516
BstSCI CCNGG 3 cut(s) 10, 226, 514
Bsu15I ATCGAT 1 cut(s) 469
BsuRI GGCC 2 cut(s) 323, 327
BsuTUI ATCGAT 1 cut(s) 469
BtsIMutI CAGTG 1 cut(s) 618
Cac8I GCNNGC 3 cut(s) 301, 325, 511
Cfr10I RCCGGY 1 cut(s) 323
Cfr13I GGNCC 2 cut(s) 321, 518
ClaI ATCGAT 1 cut(s) 469
CseI GACGC 1 cut(s) 681
Csp6I GTAC 2 cut(s) 436, 570
CviAII CATG 4 cut(s) 95, 212, 263, 295
CviJI RGCY 7 cut(s) 145, 303, 323, 327, 387, 513, 665
CviKI_1 RGCY 7 cut(s) 145, 303, 323, 327, 387, 513, 665
CviQI GTAC 2 cut(s) 436, 570
DdeI CTNAG 2 cut(s) 621, 645
DpnI GATC 3 cut(s) 51, 99, 468
DpnII GATC 3 cut(s) 49, 97, 466
Eam1104I CTCTTC 1 cut(s) 135
EarI CTCTTC 1 cut(s) 135
EciI GGCGGA 1 cut(s) 7
Eco130I CCWWGG 1 cut(s) 244
Eco47I GGWCC 1 cut(s) 518
Eco57I CTGAAG 1 cut(s) 504
Eco88I CYCGRG 1 cut(s) 588
EcoO109I RGGNCCY 1 cut(s) 518
EcoRII CCWGG 3 cut(s) 10, 226, 514
EcoT14I CCWWGG 1 cut(s) 244
ErhI CCWWGG 1 cut(s) 244
Esp3I CGTCTC 1 cut(s) 588
FaeI CATG 4 cut(s) 98, 215, 266, 298
FaqI GGGAC 1 cut(s) 425
FatI CATG 4 cut(s) 94, 211, 262, 294
FauI CCCGC 2 cut(s) 19, 619
FseI GGCCGGCC 1 cut(s) 327
GsuI CTGGAG 1 cut(s) 249
HaeIII GGCC 2 cut(s) 323, 327
HapII CCGG 3 cut(s) 276, 324, 666
HgaI GACGC 1 cut(s) 681
Hin1II CATG 4 cut(s) 98, 215, 266, 298
HincII GTYRAC 2 cut(s) 129, 217
HindII GTYRAC 2 cut(s) 129, 217
HinfI GANTC 2 cut(s) 410, 641
HpaII CCGG 3 cut(s) 276, 324, 666
HphI GGTGA 1 cut(s) 577
Hpy166II GTNNAC 3 cut(s) 129, 217, 673
Hpy188I TCNGA 3 cut(s) 117, 307, 646
Hpy188III TCNNGA 5 cut(s) 53, 173, 344, 392, 482
Hpy8I GTNNAC 3 cut(s) 129, 217, 673
HpyAV CCTTC 5 cut(s) 130, 208, 479, 531, 695
HpyCH4IV ACGT 3 cut(s) 312, 438, 597
HpyCH4V TGCA 6 cut(s) 154, 285, 294, 509, 608, 652
HpyF10VI GCNNNNNNNGC 3 cut(s) 151, 291, 300
HpyF3I CTNAG 2 cut(s) 621, 645
HpySE526I ACGT 3 cut(s) 312, 438, 597
Hsp92II CATG 4 cut(s) 98, 215, 266, 298
KroI GCCGGC 1 cut(s) 323
KroNI GCCGGC 1 cut(s) 325
Kzo9I GATC 3 cut(s) 49, 97, 466
LguI GCTCTTC 1 cut(s) 135
LmnI GCTCC 2 cut(s) 248, 551
LweI GCATC 3 cut(s) 112, 294, 349
MaeII ACGT 3 cut(s) 312, 438, 597
MaeIII GTNAC 3 cut(s) 107, 427, 535
MalI GATC 3 cut(s) 51, 99, 468
MboI GATC 3 cut(s) 49, 97, 466
MboII GAAGA 3 cut(s) 152, 464, 470
MfeI CAATTG 1 cut(s) 155
MluCI AATT 4 cut(s) 63, 155, 455, 500
MnlI CCTC 6 cut(s) 101, 114, 312, 398, 454, 584
MroNI GCCGGC 1 cut(s) 323
MseI TTAA 3 cut(s) 72, 222, 351
MslI CAYNNNNRTG 1 cut(s) 623
MspA1I CMGCKG 1 cut(s) 614
MspI CCGG 3 cut(s) 276, 324, 666
MspR9I CCNGG 3 cut(s) 12, 228, 516
MunI CAATTG 1 cut(s) 155
MvaI CCWGG 3 cut(s) 12, 228, 516
MwoI GCNNNNNNNGC 3 cut(s) 151, 291, 300
NaeI GCCGGC 1 cut(s) 325
NdeII GATC 3 cut(s) 49, 97, 466
NgoMIV GCCGGC 1 cut(s) 323
NlaIII CATG 4 cut(s) 98, 215, 266, 298
NlaIV GGNNCC 1 cut(s) 16
PciSI GCTCTTC 1 cut(s) 135
PdiI GCCGGC 1 cut(s) 325
PfeI GAWTC 2 cut(s) 410, 641
PfoI TCCNGGA 1 cut(s) 226
PpuMI RGGWCCY 1 cut(s) 518
Psp5II RGGWCCY 1 cut(s) 518
Psp6I CCWGG 3 cut(s) 10, 226, 514
PspGI CCWGG 3 cut(s) 10, 226, 514
PspN4I GGNNCC 1 cut(s) 16
PspPI GGNCC 2 cut(s) 321, 518
PspPPI RGGWCCY 1 cut(s) 518
RigI GGCCGGCC 1 cut(s) 327
RsaI GTAC 2 cut(s) 437, 571
RsaNI GTAC 2 cut(s) 436, 570
RseI CAYNNNNRTG 1 cut(s) 623
SapI GCTCTTC 1 cut(s) 135
SaqAI TTAA 3 cut(s) 72, 222, 351
Sau3AI GATC 3 cut(s) 49, 97, 466
Sau96I GGNCC 2 cut(s) 321, 518
ScrFI CCNGG 3 cut(s) 12, 228, 516
SfaNI GCATC 3 cut(s) 112, 294, 349
SinI GGWCC 1 cut(s) 518
SmiMI CAYNNNNRTG 1 cut(s) 623
Sse9I AATT 4 cut(s) 63, 155, 455, 500
SsiI CCGC 3 cut(s) 18, 26, 612
StyD4I CCNGG 3 cut(s) 10, 226, 514
StyI CCWWGG 1 cut(s) 244
TaiI ACGT 3 cut(s) 315, 441, 600
TaqI TCGA 3 cut(s) 288, 469, 688
TasI AATT 4 cut(s) 63, 155, 455, 500
TfiI GAWTC 2 cut(s) 410, 641
Tru1I TTAA 3 cut(s) 72, 222, 351
Tru9I TTAA 3 cut(s) 72, 222, 351
TscAI CASTG 1 cut(s) 625
TspDTI ATGAA 2 cut(s) 31, 270
TspRI CASTG 1 cut(s) 625
VpaK11BI GGWCC 1 cut(s) 518
XapI RAATTY 2 cut(s) 455, 500
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.