Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000173

Orthogroup ID

OG0007989

Physical Location & Seq

Genomic Coordinates Reverse (-)

157493 .. 166895

Gene Structure 9403 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_173G00434990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2649 bp

ATGGCTGAGGAGGAGGAAGGTGGCGAGATCAATGGCGGAGTGGGATCCCTGGACTCCATCGAGTCTCGGTGGGTGTTTCAGGATGAGGACGACTCAGAGATCGACGACGAGGACGCAGAGGAAGACGTCAGCCACCGCCGGACCCTAATGGATTCTGAGGACGATGACGAGGACGATAATGCCGAGCAGAGGTTGATTCGCACTGGGCCTCGCATCGATTCTTTCGATGTCGAAGCCCTCGAGGTCCCTGGCGCTCACCGAAATGAATATGAGGATTTCAGTCTTGGAAGGAAAATAGTAATTACTTTCCAGACCCTTGGGGTTGTATTTGGTGATGTTGGAACCAGTCCCTTGTATACCTTCAGTGTGCTGTTTAGCAAGGCACCTATTAATGGAAATGAAGATGTTCTGGGTGCATTGTCACTAGTCCTATACACCTTAATATTAATCCCCTTGCTTAAGTATGTTCTGGTTGTTCTTTGGGCTAACGATGATGGTGAAGGTGGTACTTTTGCTTTGTACTCATTGATCTGCCGACATGCTAAGGTCAGTCTTCTTCCAAATCAGCTTCCATCAGATGCCCGCATATCAAGCTTCAGGCTAAAGGTGCCATCTCCTGAACTTGAGAGATCTTTGAAAATAAAGGAAAGGCTTGAGGCTTCACTGACTCTGAAGAAGCTTCTTCTAATGTTAGTGCTTGCTGGTACTTCTATGGTGATAGCTGATGGCGTTGTTACACCAGCAATGTCAGTAGTTTCAGCTGTTGGTGGCCTAAAGATTGGAGTAGATGGAATTACGCAAGATCAAGTGATGATGATTTCAGTTGCGTTTCTTATAATCTTGTTCAGTGTACAGAAATTTGGGACAAGTAAAGTGGGACTTGCTGTAGGCCCTGCCTTATTCATATGGTTTTGTTCCCTTGGGGGTATTGGTATTTACAACATTGTTCAATATGACAGCAGTGTCTTGAGGGCCTTCAATCCTGTGCACATCTATTACTTCTTCAAGAGAAACTCAACTAAGGCCTGGTATGCTCTTGGGGGTTGTCTTCTATGCGCAACAGATATTATTGTGGCATTCAATCCACTCACCACTATAGGATCTACGCAGTGCACCTTCATAGGTTCTGAGGCAATGTTCGCAGATCTTTGCTACTTTTCTGTGCGATCAGTCCAGCTTACATTTGTTTGCCTTGTTTTGCCCTGCCTTATGTTGGGTTATTTGGGTCAAGCCGCATACCTTATGGAGAATCCCGATGGGGCTGACCAAGCTTTCTTTTCTTCAATTCCAAGTGGTGCTTTTGCTTTTTGGCCTGTGTTCTTCATTGCTAATATTGCTGCATTGATTGCTAGTCGTGCAATGACAACAGCCACCTTTTCATGCATAAAGCAATCAATGGCACTTGGTTGTTTCCCTCGTCTTAAAATCATACATACCTCCCGGAAATTTATGGGGCAGATTTATATCCCTGTTGTGAATTGGTTTTTGCTGGTGGTTTGCCTGGTGTCTATCTGCTCTATTTCAAGCATTGATGAGATTGGAAATGCATATGGAATTGCTGAGCTAGGAGTGATGATGATGACAACCATTTTAGTAACAATTGTTATGCTTCTTATATGGCAGATAAACATTATTATCGTGCTGAGTTTCATAATAATTTTCCTGGGGTTGGAATTGACATTTTTCTCATCAGTTCTCTGGAGTGTGGGAGATGGAAGTTGGATAATTTTGGTCTTTGCTGTTATCATGTTCTTCATAATGTTTATATGGAACTATGGAAGCAAGCTTAAGTATGAAACTGAAGTAAAGCAAAAGCTGTCGATGGATTTGATGCGGGAATTGGGTCCTAATCTTGGGACCATCAGAGCTCCAGGAATTGGCTTACTTTACAATGAGCTAGTGAAGGGTATACCAGCAATCTTTGGCCATTTTCTGACCACACTTCCTGCAGTCCACTCAATGGTCATATTTGTATGTATAAAATATGTTCCAGTTCCTGTAGTGCCTCAAAGTGAAAGGTTCCTATTCCGGCGTGTCTGCCCAAAAAGCTACCACATATTTCGTTGCATTGCCAGGTATGGCTACAAGGATGTTAGGAAGGAAAGTCACCAGACCTTTGAACAGTTACTAATTGAGAGCCTCGAGAAATTTATTCGTCGGGAAGCTCAGGAGCGGTCATTGGAGAGTGATGGGGATGATGGGGATACAGATTCGGAAGATGAGTCCTCTTGCTCAAGGGTTCTTATAGCTCCCAATGGAAGTGTCTACTCACTTGGCGTTCCTCTCCTGGCTGAGTACAAGGACCCGAGCAAGCCAATCTCAGAAGCTAGCACATCTGAGGAGGTGATGTCAGTGCCTCCTACAGATCCAGCAATTTCTGATGCTGAGCAGAGTATTGAGAGGGAACTATCTTTTATTCGCAAGGCAAAAGAATCTGGGGTTGTCTATCTTCTTGGCCATGGGGATATTAGGGCCAGAAAAGATTCCTGGTTTATTAAGAAGTTAATCATAAATTACTTCTATGCCTTCTTGAGAAAAAATTGCAGGAGGGGGATTGCAAATTTGAGCGTGCCTCATTCACATCTAATGCAGGCAATTGGATTTACAAAAGGCCTTGATGTTGCACGCCTTCCCATCACTGCTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0004016 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009975 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015318 GO:0015672 GO:0016020 GO:0016829 GO:0016849 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0071804 GO:0071805 GO:0071944 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K_trans

Protein Analysis

882

Amino Acids

97.75

Weight (kDa)

5.16

Isoelectric Point (pI)

40.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
K_trans	PF02705	102 - 609	1.2e-136	K+ potassium transporter integral membrane domain
K_trans_C	PF22776	624 - 864	5.7e-22	K+ potassium transporter C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33530 AT4G33530 AT5G09400
fragaria_vesca	FvH4_2g11940 FvH4_2g11940 FvH4_2g11940 FvH4_2g11940
malus_domestica	MD05G1045000.v1.1 MD10G1051900.v1.1
prunus_persica	Prupe.8G060500_v2.0.a1 Prupe.8G060500_v2.0.a1 Prupe.8G060500_v2.0.a1
pyrus_communis	pycom05g03750 pycom10g03670
rosa_chinensis	RchiOBHm_Chr6g0271831
rosa_laevigata	RLG00000013711
rosa_multiflora	Rmu_sc0002396.1_g000028
rosa_roxburghii	Rroxscaffold_173G00434990 Rroxscaffold_7G00196740
rosa_rugosa	Rorug06G0063500
rosa_samantha	Rh6AG181700 Rh6BG185800 Rh6CG182300
rosa_wichuraiana	Rw6G015650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	836
AasI	GACNNNNNNGTC	1 cut(s)	962
AatII	GACGTC	1 cut(s)	129
AbsI	CCTCGAGG	1 cut(s)	239
Acc16I	TGCGCA	1 cut(s)	1057
AccB1I	GGYRCC	2 cut(s)	382, 607
AccB7I	CCANNNNNTGG	2 cut(s)	1877, 1960
AccBSI	CCGCTC	1 cut(s)	2173
AccI	GTMKAC	3 cut(s)	356, 1909, 2265
AciI	CCGC	6 cut(s)	36, 136, 583, 1233, 1834, 2173
AclWI	GGATC	4 cut(s)	39, 52, 1108, 2360
AcoI	YGGCCR	2 cut(s)	1924, 2455
AcsI	RAATTY	4 cut(s)	857, 1445, 2147, 2560
AcuI	CTGAAG	4 cut(s)	346, 580, 692, 1821
AcyI	GRCGYC	1 cut(s)	126
AfaI	GTAC	5 cut(s)	508, 521, 706, 852, 2297
AfiI	CCNNNNNNNGG	7 cut(s)	189, 392, 1213, 1669, 1853, 1877, 1960
AflII	CTTAAG	2 cut(s)	458, 1787
AgsI	TTSAA	8 cut(s)	637, 950, 979, 1006, 1081, 1284, 1524, 2120
AhlI	ACTAGT	1 cut(s)	424
AjnI	CCWGG	9 cut(s)	48, 247, 1025, 1500, 1662, 1870, 2072, 2286, 2486
Alw21I	GWGCWC	3 cut(s)	990, 1115, 1870
Alw26I	GTCTC	1 cut(s)	69
Alw44I	GTGCAC	2 cut(s)	986, 1111
AlwI	GGATC	4 cut(s)	39, 52, 1108, 2360
AlwNI	CAGNNNCTG	1 cut(s)	1997
Ama87I	CYCGRG	3 cut(s)	239, 2141, 2305
ApaLI	GTGCAC	2 cut(s)	986, 1111
ApeKI	GCWGC	2 cut(s)	1337, 2642
ApoI	RAATTY	4 cut(s)	857, 1445, 2147, 2560
AseI	ATTAAT	2 cut(s)	390, 446
Asp700I	GAANNNNTTC	2 cut(s)	405, 2482
AspLEI	GCGC	2 cut(s)	254, 1058
AspS9I	GGNCC	9 cut(s)	141, 206, 244, 890, 972, 1844, 1857, 2302, 2472
AsuC2I	CCSGG	1 cut(s)	1441
AsuHPI	GGTGA	7 cut(s)	248, 344, 509, 727, 1081, 2099, 2356
AsuNHI	GCTAGC	1 cut(s)	2327
AvaI	CYCGRG	3 cut(s)	239, 2141, 2305
AvaII	GGWCC	5 cut(s)	141, 244, 1844, 1857, 2302
BaeGI	GKGCMC	2 cut(s)	990, 1115
BalI	TGGCCA	2 cut(s)	1926, 2457
BamHI	GGATCC	1 cut(s)	44
BanI	GGYRCC	2 cut(s)	382, 607
BanII	GRGCYC	1 cut(s)	1870
BbsI	GAAGAC	3 cut(s)	129, 545, 1040
Bbv12I	GWGCWC	3 cut(s)	990, 1115, 1870
BbvCI	CCTCAGC	1 cut(s)	6
BbvI	GCAGC	2 cut(s)	1324, 2629
BciT130I	CCWGG	9 cut(s)	50, 249, 1027, 1502, 1664, 1872, 2074, 2288, 2488
BciVI	GTATCC	1 cut(s)	2197
BcnI	CCSGG	1 cut(s)	1441
BcoDI	GTCTC	1 cut(s)	69
BcuI	ACTAGT	1 cut(s)	424
BfaI	CTAG	5 cut(s)	425, 1350, 1565, 1898, 2328
BfmI	CTRYAG	5 cut(s)	885, 1095, 1947, 1998, 2361
BfoI	RGCGCY	1 cut(s)	255
BfrI	CTTAAG	2 cut(s)	458, 1787
BfuI	GTATCC	1 cut(s)	2197
BglII	AGATCT	2 cut(s)	629, 1144
BisI	GCNGC	3 cut(s)	1233, 1338, 2643
BlpI	GCTNAGC	2 cut(s)	1560, 2385
BlsI	GCNGC	3 cut(s)	1234, 1339, 2644
Bme18I	GGWCC	5 cut(s)	141, 244, 1844, 1857, 2302
BmeT110I	CYCGRG	3 cut(s)	239, 2141, 2305
BmgT120I	GGNCC	9 cut(s)	141, 206, 244, 890, 972, 1844, 1857, 2302, 2472
BmrI	ACTGGG	1 cut(s)	213
BmsI	GCATC	4 cut(s)	222, 568, 1821, 2371
BmtI	GCTAGC	1 cut(s)	2331
BmuI	ACTGGG	1 cut(s)	213
BpiI	GAAGAC	3 cut(s)	129, 545, 1040
BplI	GAGNNNNNCTC	4 cut(s)	77, 109, 2557, 2589
BpmI	CTGGAG	2 cut(s)	1720, 1854
Bpu10I	CCTNAGC	3 cut(s)	6, 543, 2166
Bpu1102I	GCTNAGC	2 cut(s)	1560, 2385
BpuEI	CTTGAG	5 cut(s)	644, 674, 988, 2218, 2551
BpuMI	CCSGG	1 cut(s)	1441
Bsa29I	ATCGAT	1 cut(s)	216
BsaBI	GATNNNNATC	1 cut(s)	1463
BsaHI	GRCGYC	1 cut(s)	126
BsaJI	CCNNGG	6 cut(s)	48, 247, 316, 919, 1663, 2458
BsaXI	ACNNNNNCTCC	2 cut(s)	2333, 2363
Bsc4I	CCNNNNNNNGG	7 cut(s)	189, 392, 1213, 1669, 1853, 1877, 1960
Bse1I	ACTGG	3 cut(s)	208, 345, 1991
Bse3DI	GCAATG	5 cut(s)	750, 1140, 1323, 1365, 2067
Bse8I	GATNNNNATC	1 cut(s)	1463
BseBI	CCWGG	9 cut(s)	50, 249, 1027, 1502, 1664, 1872, 2074, 2288, 2488
BseCI	ATCGAT	1 cut(s)	216
BseDI	CCNNGG	6 cut(s)	48, 247, 316, 919, 1663, 2458
BseGI	GGATG	3 cut(s)	88, 2095, 2200
BseJI	GATNNNNATC	1 cut(s)	1463
BseLI	CCNNNNNNNGG	7 cut(s)	189, 392, 1213, 1669, 1853, 1877, 1960
BseMI	GCAATG	5 cut(s)	750, 1140, 1323, 1365, 2067
BseNI	ACTGG	3 cut(s)	208, 345, 1991
BseRI	GAGGAG	3 cut(s)	23, 26, 2354
BseSI	GKGCMC	2 cut(s)	990, 1115
BseXI	GCAGC	2 cut(s)	1324, 2629
BshNI	GGYRCC	2 cut(s)	382, 607
BshVI	ATCGAT	1 cut(s)	216
BsiHKAI	GWGCWC	3 cut(s)	990, 1115, 1870
BsiHKCI	CYCGRG	3 cut(s)	239, 2141, 2305
BsiSI	CCGG	3 cut(s)	139, 1441, 2029
BslFI	GGGAC	5 cut(s)	230, 333, 877, 891, 1870
BslI	CCNNNNNNNGG	7 cut(s)	189, 392, 1213, 1669, 1853, 1877, 1960
BsmAI	GTCTC	1 cut(s)	69
BsmFI	GGGAC	5 cut(s)	230, 333, 877, 891, 1870
BsmI	GAATGC	1 cut(s)	1076
BsoBI	CYCGRG	3 cut(s)	239, 2141, 2305
Bsp1286I	GDGCHC	3 cut(s)	990, 1115, 1870
Bsp1407I	TGTACA	1 cut(s)	850
Bsp1720I	GCTNAGC	2 cut(s)	1560, 2385
Bsp19I	CCATGG	1 cut(s)	2458
BspACI	CCGC	6 cut(s)	36, 136, 583, 1233, 1834, 2173
BspDI	ATCGAT	1 cut(s)	216
BspMAI	CTGCAG	1 cut(s)	1951
BspOI	GCTAGC	1 cut(s)	2331
BspPI	GGATC	4 cut(s)	39, 52, 1108, 2360
BspT107I	GGYRCC	2 cut(s)	382, 607
BspTI	CTTAAG	2 cut(s)	458, 1787
BsrBI	CCGCTC	1 cut(s)	2173
BsrDI	GCAATG	5 cut(s)	750, 1140, 1323, 1365, 2067
BsrGI	TGTACA	1 cut(s)	850
BsrI	ACTGG	3 cut(s)	208, 345, 1991
BssECI	CCNNGG	6 cut(s)	48, 247, 316, 919, 1663, 2458
BssNAI	GTATAC	2 cut(s)	357, 1910
BssNI	GRCGYC	1 cut(s)	126
BssT1I	CCWWGG	3 cut(s)	316, 919, 2458
Bst1107I	GTATAC	2 cut(s)	357, 1910
Bst2UI	CCWGG	9 cut(s)	50, 249, 1027, 1502, 1664, 1872, 2074, 2288, 2488
Bst4CI	ACNGT	1 cut(s)	2124
BstACI	GRCGYC	1 cut(s)	126
BstAFI	CTTAAG	2 cut(s)	458, 1787
BstAPI	GCANNNNNTGC	1 cut(s)	1346
BstAUI	TGTACA	1 cut(s)	850
BstC8I	GCNNGC	8 cut(s)	583, 699, 1784, 2312, 2329, 2570, 2592, 2626
BstDSI	CCRYGG	1 cut(s)	2458
BstF5I	GGATG	3 cut(s)	88, 2095, 2200
BstH2I	RGCGCY	1 cut(s)	255
BstHHI	GCGC	2 cut(s)	254, 1058
BstMAI	GTCTC	1 cut(s)	69
BstMWI	GCNNNNNNNGC	9 cut(s)	591, 607, 1031, 1139, 1268, 1334, 1346, 1355, 2046
BstNI	CCWGG	9 cut(s)	50, 249, 1027, 1502, 1664, 1872, 2074, 2288, 2488
BstNSI	RCATGY	1 cut(s)	542
BstSFI	CTRYAG	5 cut(s)	885, 1095, 1947, 1998, 2361
BstSLI	GKGCMC	2 cut(s)	990, 1115
BstV1I	GCAGC	2 cut(s)	1324, 2629
BstV2I	GAAGAC	3 cut(s)	129, 545, 1040
BstX2I	RGATCY	5 cut(s)	44, 629, 1100, 1144, 2365
BstXI	CCANNNNNNTGG	1 cut(s)	317
BstYI	RGATCY	5 cut(s)	44, 629, 1100, 1144, 2365
BstZ17I	GTATAC	2 cut(s)	357, 1910
Bsu15I	ATCGAT	1 cut(s)	216
BsuI	GTATCC	1 cut(s)	2197
BsuTUI	ATCGAT	1 cut(s)	216
BtgI	CCRYGG	1 cut(s)	2458
BtsCI	GGATG	3 cut(s)	88, 2095, 2200
BtsI	GCAGTG	3 cut(s)	967, 1115, 2637
BtsIMutI	CAGTG	8 cut(s)	201, 370, 662, 853, 967, 1115, 2358, 2637
Cac8I	GCNNGC	8 cut(s)	583, 699, 1784, 2312, 2329, 2570, 2592, 2626
CaiI	CAGNNNCTG	1 cut(s)	1997
CfoI	GCGC	2 cut(s)	254, 1058
Cfr13I	GGNCC	9 cut(s)	141, 206, 244, 890, 972, 1844, 1857, 2302, 2472
ClaI	ATCGAT	1 cut(s)	216
CseI	GACGC	1 cut(s)	122
Csp6I	GTAC	5 cut(s)	507, 520, 705, 851, 2296
CspCI	CAANNNNNGTGG	2 cut(s)	855, 890
CviAII	CATG	4 cut(s)	539, 1380, 1747, 2459
CviQI	GTAC	5 cut(s)	507, 520, 705, 851, 2296
DrdI	GACNNNNNNGTC	1 cut(s)	962
DseDI	GACNNNNNNGTC	1 cut(s)	962
EaeI	YGGCCR	2 cut(s)	1924, 2455
EciI	GGCGGA	1 cut(s)	51
Ecl136II	GAGCTC	1 cut(s)	1868
Eco130I	CCWWGG	3 cut(s)	316, 919, 2458
Eco147I	AGGCCT	2 cut(s)	1025, 2613
Eco24I	GRGCYC	1 cut(s)	1870
Eco47I	GGWCC	5 cut(s)	141, 244, 1844, 1857, 2302
Eco53kI	GAGCTC	1 cut(s)	1868
Eco57I	CTGAAG	4 cut(s)	346, 580, 692, 1821
Eco88I	CYCGRG	3 cut(s)	239, 2141, 2305
EcoICRI	GAGCTC	1 cut(s)	1868
EcoO109I	RGGNCCY	5 cut(s)	244, 890, 972, 1844, 2302
EcoRII	CCWGG	9 cut(s)	48, 247, 1025, 1500, 1662, 1870, 2072, 2286, 2486
EcoT14I	CCWWGG	3 cut(s)	316, 919, 2458
EcoT22I	ATGCAT	2 cut(s)	1385, 1549
EcoT38I	GRGCYC	1 cut(s)	1870
ErhI	CCWWGG	3 cut(s)	316, 919, 2458
FaeI	CATG	4 cut(s)	542, 1383, 1750, 2462
FalI	AAGNNNNNCTT	4 cut(s)	864, 896, 1282, 1314
FaqI	GGGAC	5 cut(s)	230, 333, 877, 891, 1870
FatI	CATG	4 cut(s)	538, 1379, 1746, 2458
FauI	CCCGC	2 cut(s)	590, 1827
FauNDI	CATATG	2 cut(s)	905, 1549
FblI	GTMKAC	3 cut(s)	356, 1909, 2265
Fnu4HI	GCNGC	3 cut(s)	1233, 1338, 2643
FokI	GGATG	3 cut(s)	95, 2102, 2207
FriOI	GRGCYC	1 cut(s)	1870
Fsp4HI	GCNGC	3 cut(s)	1233, 1338, 2643
FspBI	CTAG	5 cut(s)	425, 1350, 1565, 1898, 2328
FspI	TGCGCA	1 cut(s)	1057
GlaI	GCGC	2 cut(s)	253, 1057
GluI	GCNGC	3 cut(s)	1233, 1338, 2643
GsuI	CTGGAG	2 cut(s)	1720, 1854
HaeII	RGCGCY	1 cut(s)	255
HapII	CCGG	3 cut(s)	139, 1441, 2029
HgaI	GACGC	1 cut(s)	122
HhaI	GCGC	2 cut(s)	254, 1058
Hin1I	GRCGYC	1 cut(s)	126
Hin1II	CATG	4 cut(s)	542, 1383, 1750, 2462
Hin6I	GCGC	2 cut(s)	252, 1056
HinP1I	GCGC	2 cut(s)	252, 1056
HindIII	AAGCTT	4 cut(s)	592, 677, 1269, 1784
HpaII	CCGG	3 cut(s)	139, 1441, 2029
HphI	GGTGA	7 cut(s)	248, 344, 509, 727, 1081, 2099, 2356
Hpy166II	GTNNAC	7 cut(s)	357, 851, 988, 1113, 1910, 1954, 2266
Hpy8I	GTNNAC	7 cut(s)	357, 851, 988, 1113, 1910, 1954, 2266
Hpy99I	CGWCG	3 cut(s)	107, 110, 2160
HpyCH4III	ACNGT	1 cut(s)	2124
HpyCH4IV	ACGT	1 cut(s)	126
HpyF10VI	GCNNNNNNNGC	9 cut(s)	591, 607, 1031, 1139, 1268, 1334, 1346, 1355, 2046
HpySE526I	ACGT	1 cut(s)	126
Hsp92I	GRCGYC	1 cut(s)	126
Hsp92II	CATG	4 cut(s)	542, 1383, 1750, 2462
HspAI	GCGC	2 cut(s)	252, 1056
LmnI	GCTCC	3 cut(s)	1873, 2170, 2254
Lsp1109I	GCAGC	2 cut(s)	1324, 2629
LweI	GCATC	4 cut(s)	222, 568, 1821, 2371
MaeI	CTAG	5 cut(s)	425, 1350, 1565, 1898, 2328
MaeII	ACGT	1 cut(s)	126
MaeIII	GTNAC	5 cut(s)	420, 733, 1594, 2105, 2124
MbiI	CCGCTC	1 cut(s)	2173
MfeI	CAATTG	2 cut(s)	1599, 2595
MflI	RGATCY	5 cut(s)	44, 629, 1100, 1144, 2365
MhlI	GDGCHC	3 cut(s)	990, 1115, 1870
MlsI	TGGCCA	2 cut(s)	1926, 2457
MluNI	TGGCCA	2 cut(s)	1926, 2457
MlyI	GAGTC	5 cut(s)	47, 71, 86, 661, 2231
MmeI	TCCRAC	3 cut(s)	319, 1650, 1700
Mox20I	TGGCCA	2 cut(s)	1926, 2457
Mph1103I	ATGCAT	2 cut(s)	1385, 1549
MroXI	GAANNNNTTC	2 cut(s)	405, 2482
MscI	TGGCCA	2 cut(s)	1926, 2457
MseI	TTAA	8 cut(s)	390, 440, 446, 459, 1422, 1788, 2496, 2504
MslI	CAYNNNNRTG	1 cut(s)	261
Msp20I	TGGCCA	2 cut(s)	1926, 2457
MspA1I	CMGCKG	1 cut(s)	761
MspCI	CTTAAG	2 cut(s)	458, 1787
MspI	CCGG	3 cut(s)	139, 1441, 2029
MunI	CAATTG	2 cut(s)	1599, 2595
Mva1269I	GAATGC	1 cut(s)	1076
MvaI	CCWGG	9 cut(s)	50, 249, 1027, 1502, 1664, 1872, 2074, 2288, 2488
MwoI	GCNNNNNNNGC	9 cut(s)	591, 607, 1031, 1139, 1268, 1334, 1346, 1355, 2046
NciI	CCSGG	1 cut(s)	1441
NcoI	CCATGG	1 cut(s)	2458
NdeI	CATATG	2 cut(s)	905, 1549
NheI	GCTAGC	1 cut(s)	2327
NlaIII	CATG	4 cut(s)	542, 1383, 1750, 2462
NmeAIII	GCCGAG	1 cut(s)	208
NmuCI	GTSAC	2 cut(s)	420, 2105
NsbI	TGCGCA	1 cut(s)	1057
NsiI	ATGCAT	2 cut(s)	1385, 1549
NspI	RCATGY	1 cut(s)	542
PaeR7I	CTCGAG	2 cut(s)	239, 2141
PceI	AGGCCT	2 cut(s)	1025, 2613
PcsI	WCGNNNNNNNCGW	3 cut(s)	180, 222, 237
PctI	GAATGC	1 cut(s)	1076
PdmI	GAANNNNTTC	2 cut(s)	405, 2482
PfeI	GAWTC	7 cut(s)	152, 196, 218, 1249, 2210, 2432, 2483
PflMI	CCANNNNNTGG	2 cut(s)	1877, 1960
PfoI	TCCNGGA	2 cut(s)	1439, 1870
PkrI	GCNGC	3 cut(s)	1234, 1339, 2644
PleI	GAGTC	5 cut(s)	47, 70, 86, 661, 2230
PpsI	GAGTC	5 cut(s)	47, 70, 86, 661, 2230
PpuMI	RGGWCCY	3 cut(s)	244, 1844, 2302
PshBI	ATTAAT	2 cut(s)	390, 446
PsiI	TTATAA	1 cut(s)	836
Psp124BI	GAGCTC	1 cut(s)	1870
Psp5II	RGGWCCY	3 cut(s)	244, 1844, 2302
Psp6I	CCWGG	9 cut(s)	48, 247, 1025, 1500, 1662, 1870, 2072, 2286, 2486
PspGI	CCWGG	9 cut(s)	48, 247, 1025, 1500, 1662, 1870, 2072, 2286, 2486
PspPI	GGNCC	9 cut(s)	141, 206, 244, 890, 972, 1844, 1857, 2302, 2472
PspPPI	RGGWCCY	3 cut(s)	244, 1844, 2302
PspXI	VCTCGAGB	1 cut(s)	239
PstI	CTGCAG	1 cut(s)	1951
PstNI	CAGNNNCTG	1 cut(s)	1997
PsuI	RGATCY	5 cut(s)	44, 629, 1100, 1144, 2365
PvuII	CAGCTG	1 cut(s)	761
RsaI	GTAC	5 cut(s)	508, 521, 706, 852, 2297
RsaNI	GTAC	5 cut(s)	507, 520, 705, 851, 2296
RseI	CAYNNNNRTG	1 cut(s)	261
SacI	GAGCTC	1 cut(s)	1870
SaqAI	TTAA	8 cut(s)	390, 440, 446, 459, 1422, 1788, 2496, 2504
SatI	GCNGC	3 cut(s)	1233, 1338, 2643
Sau96I	GGNCC	9 cut(s)	141, 206, 244, 890, 972, 1844, 1857, 2302, 2472
SchI	GAGTC	5 cut(s)	47, 71, 86, 661, 2231
SduI	GDGCHC	3 cut(s)	990, 1115, 1870
SfaNI	GCATC	4 cut(s)	222, 568, 1821, 2371
SfcI	CTRYAG	5 cut(s)	885, 1095, 1947, 1998, 2361
Sfr274I	CTCGAG	2 cut(s)	239, 2141
SinI	GGWCC	5 cut(s)	141, 244, 1844, 1857, 2302
SlaI	CTCGAG	2 cut(s)	239, 2141
SmiMI	CAYNNNNRTG	1 cut(s)	261
SmlI	CTYRAG	9 cut(s)	239, 458, 623, 653, 967, 1787, 2141, 2233, 2530
SmoI	CTYRAG	9 cut(s)	239, 458, 623, 653, 967, 1787, 2141, 2233, 2530
SpeI	ACTAGT	1 cut(s)	424
SseBI	AGGCCT	2 cut(s)	1025, 2613
SsiI	CCGC	6 cut(s)	36, 136, 583, 1233, 1834, 2173
SspI	AATATT	2 cut(s)	444, 1333
SspMI	CTAG	5 cut(s)	425, 1350, 1565, 1898, 2328
SstI	GAGCTC	1 cut(s)	1870
StuI	AGGCCT	2 cut(s)	1025, 2613
StyI	CCWWGG	3 cut(s)	316, 919, 2458
TaaI	ACNGT	1 cut(s)	2124
TaiI	ACGT	1 cut(s)	129
TaqI	TCGA	8 cut(s)	60, 102, 216, 225, 231, 240, 1820, 2142
TatI	WGTACW	3 cut(s)	519, 850, 2295
TauI	GCSGC	1 cut(s)	1235
TfiI	GAWTC	7 cut(s)	152, 196, 218, 1249, 2210, 2432, 2483
Tru1I	TTAA	8 cut(s)	390, 440, 446, 459, 1422, 1788, 2496, 2504
Tru9I	TTAA	8 cut(s)	390, 440, 446, 459, 1422, 1788, 2496, 2504
TscAI	CASTG	8 cut(s)	208, 370, 669, 853, 967, 1115, 2358, 2644
TseFI	GTSAC	2 cut(s)	420, 2105
TseI	GCWGC	2 cut(s)	1337, 2642
Tsp45I	GTSAC	2 cut(s)	420, 2105
TspDTI	ATGAA	9 cut(s)	279, 414, 892, 1108, 1312, 1368, 1639, 1744, 1809
TspRI	CASTG	8 cut(s)	208, 370, 669, 853, 967, 1115, 2358, 2644
Van91I	CCANNNNNTGG	2 cut(s)	1877, 1960
Vha464I	CTTAAG	2 cut(s)	458, 1787
VneI	GTGCAC	2 cut(s)	986, 1111
VpaK11BI	GGWCC	5 cut(s)	141, 244, 1844, 1857, 2302
VspI	ATTAAT	2 cut(s)	390, 446
XapI	RAATTY	4 cut(s)	857, 1445, 2147, 2560
XceI	RCATGY	1 cut(s)	542
XhoI	CTCGAG	2 cut(s)	239, 2141
XmiI	GTMKAC	3 cut(s)	356, 1909, 2265
XmnI	GAANNNNTTC	2 cut(s)	405, 2482
XspI	CTAG	5 cut(s)	425, 1350, 1565, 1898, 2328
ZraI	GACGTC	1 cut(s)	127
Zsp2I	ATGCAT	2 cut(s)	1385, 1549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.