Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0007989

Physical Location & Seq

Genomic Coordinates Forward (+)

31776598 .. 31786909

Gene Structure 10312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG181700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2556 bp

ATGGCTGAGGAGGAGGAAGGTGGCGAGATCAATGGCGGAGTGGGATCCCTGGACTCCATCGAGTCTCGGTGGGTGTTTCAGGACGAGGACGACTCAGAGATCGACGACGAGGACGCAGAGGAAGACGTGAGGCACCGCCGGACCGTAATGGATTCTGAGGACGATGACGAGGACGATAATGCCGAGCAGAGGTTGATTCGCACTGGCCCTCGCATCGATTCTTTCGATGTCGAAGCCCTCGAGGTCCCTGGCGCTCACCGAAATGAATATGAGGATTTCAGTCTTGGAAGGAAAATAGTAATTGCTTTCCAGACCCTTGGGGTTGTATTTGGTGATGTTGGAACCAGTCCCTTGTATACCTTCAGTGTGCTGTTTAGCAAGGCACCTATTAATGGAAATGAAGATGTTCTGGGTGCATTGTCACTAGTCCTATACACCTTAATATTAATCCCCTTGCTTAAGTATGTTCTGGTTGTTCTTTGGGCTAACGATGATGGTGAAGGTGGTACTTTTGCTTTGTACTCATTGATCTGCCGACATGCTAAGGTCAGTCTTCTTCCAAATCAGCTTCCATCAGATGCCCGCATATCAAGCTTCAGGCTAAAGGTGCCATCTCCTGAACTTGAGAGATCTTTGAAAATAAAGGAAAGGCTTGAGGCTTCACTGACTCTGAAGAAGCTTCTTCTAATGTTAGTGCTTGCTGGTACTTCTATGGTGATAGCTGATGGCGTTGTTACACCAGCAATGTCAGTAGTTTCAGCTGTTGGTGGCCTAAAGATTGGAGTAGATGGAATTACGCAAGATCAAGTGATGATGATTTCAGTTGCGTTTCTTATAATCTTGTTCAGTGTACAGAAATTTGGGACAAGTAAAGTGGGACTTGCTGTAGGCCCTGCCTTATTCATATGGTTTTGTTCCCTTGGGGGTATTGGTATTTACAACATTGTTCAATATGACAGCAGTGTCTTGAGGGCCTTCAATCCTGTTCACATCTATTACTTCTTCGAGAGGAACTCAACTAAGGCCTGGTATGCTCTTGGGGGTTGTCTTCTATGCGCAACAGGTTCTGAGGCAATGTTCGCAGATCTTTGCTACTTTTCTGTGCGATCAGTCCAGCTTACATTTGTTTGCCTCGTTTTGCCCTGCCTTATGTTGGGTTATTTGGGTCAAGCCGCATACCTTATGGAGAATCCCAATGGGGCTGACCAAGCTTTCTTTTCTTCAATTCCAAGTGGTGCTTTTGCTTTTTGGCCTGTGTTCTTCATTGCTAATATTGCTGCATTGATTGCTAGTCGTGCAATGACAACAGCCACCTTTTCATGCATAAAACAATCAATGGCACTTGGTTGTTTCCCTCGTCTTAAAATCATACATACCTCCCGGAAATTTATGGGGCAGATTTATATCCCTGTTGTGAATTGGTTTTTGCTGGTGGTTTGCCTGGTGTCTATCTGCTCTATTTCAAGCATTGATGAGATTGGAAACGCATATGGAATTGCTGAGCTAGGAGTGATGATGATGACAACCATTTTAGTAACAATTGTTATGCTTCTTATATGGCAGATAAACATTATTATCGTGCTGAGTTTCGTAATAATTTTCCTCGGGTTGGAATTGACATTTTTCTCATCAGTTCTCTGGAGTGTGGGAGATGGAAGTTGGATAATTTTGGTCTTTGCTGTTGTCATGTTCTTCATAATGTTTATATGGAACTATGGAAGCAAGCTCAAGTATGAAACTGAAGTAAAGCAAAAGCTGTCAATGGATTTGATGCGGGAATTGGGTCCTAATCTTGGGACCATCAGAGCTCCAGGAATTGGCTTACTTTACAATGAGCTAGTGAAGGGTATACCAGCAATCTTTGGCCATTTTCTGACCACACTTCCTGCTGTCCACTCAATGGTCATATTTGTATGTATAAAATATGTTCCAGTTCCTGTAGTGCCTCAAAGTGAAAGGTTCCTATTCCGGCGTGTCTGCCCAAAAAGCTACCACATATTTCGTTGCATTGCCAGGTATGGCTACAAGGATGTTAGGAAGGAAAGTCACCAGACCTTTGAACAGTTACTAATTGAGAGCCTCGAGAAATTTATTCGTCGGGAAGCTCAGGAGCGGTCATTGGAGAGTGATGGGGATGATGGGGATACAGATTCGGAAGATGAGTCCTCTTGCTCAAGGGTTCTTATAGCTCCCAATGGAAGTGTCTACTCACTTGGCGTTCCTCTCCTGGCTGAGTACAAGGAGCCGAGCAAGCCAATCTCAGAAGCTAGCACATCTGAGGAGATGACGTCAGTGCCTCCTACAGATCCAGCAATTTCTGATGCTGAGCAGAGTATTGAGAGGGAACTATCTTTTATTCGCAAGGCAAAAGAATCTGGGGTTGTCTATCTTCTTGGCCATGGGGATATTAGGGCCAGAAAAGATTCCTGGTTTATTAAGAAGTTAATCATAAATTACTTCTACGCCTTCTTGAGAAAAAATTGCAGGAGGGGGATTGCAAATTTGAGCGTGCCTCATTCGCATCTAATGCAGGTTGGCATGACATATATGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0004016 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009975 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015318 GO:0015672 GO:0016020 GO:0016829 GO:0016849 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0071804 GO:0071805 GO:0071944 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K_trans

Protein Analysis

851

Amino Acids

94.61

Weight (kDa)

5.16

Isoelectric Point (pI)

41.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
K_trans	PF02705	102 - 589	2.3e-145	K+ potassium transporter integral membrane domain
K_trans_C	PF22776	604 - 849	5.1e-24	K+ potassium transporter C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33530 AT4G33530 AT5G09400
fragaria_vesca	FvH4_2g11940 FvH4_2g11940 FvH4_2g11940 FvH4_2g11940
malus_domestica	MD05G1045000.v1.1 MD10G1051900.v1.1
prunus_persica	Prupe.8G060500_v2.0.a1 Prupe.8G060500_v2.0.a1 Prupe.8G060500_v2.0.a1
pyrus_communis	pycom05g03750 pycom10g03670
rosa_chinensis	RchiOBHm_Chr6g0271831
rosa_laevigata	RLG00000013711
rosa_multiflora	Rmu_sc0002396.1_g000028
rosa_roxburghii	Rroxscaffold_173G00434990 Rroxscaffold_7G00196740
rosa_rugosa	Rorug06G0063500
rosa_samantha	Rh6AG181700 Rh6BG185800 Rh6CG182300
rosa_wichuraiana	Rw6G015650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	836
AasI	GACNNNNNNGTC	1 cut(s)	962
AatII	GACGTC	1 cut(s)	2291
AbsI	CCTCGAGG	1 cut(s)	239
Acc16I	TGCGCA	1 cut(s)	1057
Acc36I	ACCTGC	1 cut(s)	2521
AccB1I	GGYRCC	3 cut(s)	132, 382, 607
AccB7I	CCANNNNNTGG	2 cut(s)	1817, 1900
AccBSI	CCGCTC	1 cut(s)	2113
AccI	GTMKAC	3 cut(s)	356, 1849, 2205
AciI	CCGC	6 cut(s)	36, 136, 583, 1173, 1774, 2113
AclWI	GGATC	3 cut(s)	39, 52, 2300
AcoI	YGGCCR	2 cut(s)	1864, 2395
AcsI	RAATTY	4 cut(s)	857, 1385, 2087, 2500
AcuI	CTGAAG	4 cut(s)	346, 580, 692, 1761
AcyI	GRCGYC	1 cut(s)	2288
AfaI	GTAC	5 cut(s)	508, 521, 706, 852, 2237
AfiI	CCNNNNNNNGG	7 cut(s)	189, 392, 1153, 1609, 1793, 1817, 1900
AflII	CTTAAG	1 cut(s)	458
AgsI	TTSAA	6 cut(s)	637, 950, 979, 1224, 1464, 2060
AhlI	ACTAGT	1 cut(s)	424
AjiI	CACGTC	1 cut(s)	127
AjnI	CCWGG	8 cut(s)	48, 247, 1025, 1440, 1810, 2012, 2226, 2426
Alw21I	GWGCWC	1 cut(s)	1810
Alw26I	GTCTC	1 cut(s)	69
AlwI	GGATC	3 cut(s)	39, 52, 2300
AlwNI	CAGNNNCTG	2 cut(s)	1067, 1937
Ama87I	CYCGRG	3 cut(s)	239, 1604, 2081
AoxI	GGCC	9 cut(s)	205, 769, 889, 972, 1023, 1250, 1864, 2395, 2412
ApeKI	GCWGC	1 cut(s)	1277
ApoI	RAATTY	4 cut(s)	857, 1385, 2087, 2500
AseI	ATTAAT	2 cut(s)	390, 446
Asp700I	GAANNNNTTC	2 cut(s)	405, 2422
AspLEI	GCGC	2 cut(s)	254, 1058
AspS9I	GGNCC	8 cut(s)	141, 206, 244, 890, 972, 1784, 1797, 2412
AsuC2I	CCSGG	1 cut(s)	1381
AsuHPI	GGTGA	5 cut(s)	248, 344, 509, 727, 2039
AsuNHI	GCTAGC	1 cut(s)	2267
AvaI	CYCGRG	3 cut(s)	239, 1604, 2081
AvaII	GGWCC	4 cut(s)	141, 244, 1784, 1797
BalI	TGGCCA	2 cut(s)	1866, 2397
BamHI	GGATCC	1 cut(s)	44
BanI	GGYRCC	3 cut(s)	132, 382, 607
BanII	GRGCYC	1 cut(s)	1810
BbsI	GAAGAC	3 cut(s)	129, 545, 1040
Bbv12I	GWGCWC	1 cut(s)	1810
BbvCI	CCTCAGC	1 cut(s)	6
BbvI	GCAGC	1 cut(s)	1264
BciT130I	CCWGG	8 cut(s)	50, 249, 1027, 1442, 1812, 2014, 2228, 2428
BciVI	GTATCC	1 cut(s)	2137
BcnI	CCSGG	1 cut(s)	1381
BcoDI	GTCTC	1 cut(s)	69
BcuI	ACTAGT	1 cut(s)	424
BfaI	CTAG	5 cut(s)	425, 1290, 1505, 1838, 2268
BfmI	CTRYAG	3 cut(s)	885, 1938, 2301
BfoI	RGCGCY	1 cut(s)	255
BfrI	CTTAAG	1 cut(s)	458
BfuAI	ACCTGC	1 cut(s)	2521
BfuI	GTATCC	1 cut(s)	2137
BglII	AGATCT	2 cut(s)	629, 1084
BisI	GCNGC	2 cut(s)	1173, 1278
BlpI	GCTNAGC	2 cut(s)	1500, 2325
BlsI	GCNGC	2 cut(s)	1174, 1279
Bme1390I	CCNGG	9 cut(s)	50, 249, 1027, 1381, 1442, 1812, 2014, 2228, 2428
Bme18I	GGWCC	4 cut(s)	141, 244, 1784, 1797
BmeT110I	CYCGRG	3 cut(s)	239, 1604, 2081
BmgBI	CACGTC	1 cut(s)	127
BmgT120I	GGNCC	8 cut(s)	141, 206, 244, 890, 972, 1784, 1797, 2412
BmrFI	CCNGG	9 cut(s)	50, 249, 1027, 1381, 1442, 1812, 2014, 2228, 2428
BmsI	GCATC	5 cut(s)	222, 568, 1761, 2311, 2530
BmtI	GCTAGC	1 cut(s)	2271
BpiI	GAAGAC	3 cut(s)	129, 545, 1040
BplI	GAGNNNNNCTC	6 cut(s)	77, 109, 998, 1030, 2497, 2529
BpmI	CTGGAG	2 cut(s)	1660, 1794
Bpu10I	CCTNAGC	3 cut(s)	6, 543, 2106
Bpu1102I	GCTNAGC	2 cut(s)	1500, 2325
BpuEI	CTTGAG	6 cut(s)	644, 674, 988, 1712, 2158, 2491
BpuMI	CCSGG	1 cut(s)	1381
Bsa29I	ATCGAT	1 cut(s)	216
BsaBI	GATNNNNATC	1 cut(s)	1403
BsaHI	GRCGYC	1 cut(s)	2288
BsaJI	CCNNGG	6 cut(s)	48, 247, 316, 919, 1603, 2398
BsaXI	ACNNNNNCTCC	2 cut(s)	2273, 2303
Bsc4I	CCNNNNNNNGG	7 cut(s)	189, 392, 1153, 1609, 1793, 1817, 1900
Bse1I	ACTGG	3 cut(s)	208, 345, 1931
Bse3DI	GCAATG	5 cut(s)	750, 1080, 1263, 1305, 2007
Bse8I	GATNNNNATC	1 cut(s)	1403
BseBI	CCWGG	8 cut(s)	50, 249, 1027, 1442, 1812, 2014, 2228, 2428
BseCI	ATCGAT	1 cut(s)	216
BseDI	CCNNGG	6 cut(s)	48, 247, 316, 919, 1603, 2398
BseGI	GGATG	2 cut(s)	2035, 2140
BseJI	GATNNNNATC	1 cut(s)	1403
BseLI	CCNNNNNNNGG	7 cut(s)	189, 392, 1153, 1609, 1793, 1817, 1900
BseMI	GCAATG	5 cut(s)	750, 1080, 1263, 1305, 2007
BseNI	ACTGG	3 cut(s)	208, 345, 1931
BseRI	GAGGAG	3 cut(s)	23, 26, 2294
BseXI	GCAGC	1 cut(s)	1264
BshFI	GGCC	9 cut(s)	207, 771, 891, 974, 1025, 1252, 1866, 2397, 2414
BshNI	GGYRCC	3 cut(s)	132, 382, 607
BshVI	ATCGAT	1 cut(s)	216
BsiHKAI	GWGCWC	1 cut(s)	1810
BsiHKCI	CYCGRG	3 cut(s)	239, 1604, 2081
BsiSI	CCGG	3 cut(s)	139, 1381, 1969
BslFI	GGGAC	5 cut(s)	230, 333, 877, 891, 1810
BslI	CCNNNNNNNGG	7 cut(s)	189, 392, 1153, 1609, 1793, 1817, 1900
BsmAI	GTCTC	1 cut(s)	69
BsmFI	GGGAC	5 cut(s)	230, 333, 877, 891, 1810
BsnI	GGCC	9 cut(s)	207, 771, 891, 974, 1025, 1252, 1866, 2397, 2414
BsoBI	CYCGRG	3 cut(s)	239, 1604, 2081
Bsp1286I	GDGCHC	1 cut(s)	1810
Bsp1407I	TGTACA	1 cut(s)	850
Bsp143I	GATC	9 cut(s)	27, 44, 99, 528, 629, 802, 1084, 1106, 2305
Bsp1720I	GCTNAGC	2 cut(s)	1500, 2325
Bsp19I	CCATGG	1 cut(s)	2398
BspACI	CCGC	6 cut(s)	36, 136, 583, 1173, 1774, 2113
BspANI	GGCC	9 cut(s)	207, 771, 891, 974, 1025, 1252, 1866, 2397, 2414
BspDI	ATCGAT	1 cut(s)	216
BspMI	ACCTGC	1 cut(s)	2521
BspOI	GCTAGC	1 cut(s)	2271
BspPI	GGATC	3 cut(s)	39, 52, 2300
BspT107I	GGYRCC	3 cut(s)	132, 382, 607
BspTI	CTTAAG	1 cut(s)	458
BsrBI	CCGCTC	1 cut(s)	2113
BsrDI	GCAATG	5 cut(s)	750, 1080, 1263, 1305, 2007
BsrGI	TGTACA	1 cut(s)	850
BsrI	ACTGG	3 cut(s)	208, 345, 1931
BssECI	CCNNGG	6 cut(s)	48, 247, 316, 919, 1603, 2398
BssMI	GATC	9 cut(s)	27, 44, 99, 528, 629, 802, 1084, 1106, 2305
BssNAI	GTATAC	2 cut(s)	357, 1850
BssNI	GRCGYC	1 cut(s)	2288
BssT1I	CCWWGG	3 cut(s)	316, 919, 2398
Bst1107I	GTATAC	2 cut(s)	357, 1850
Bst2UI	CCWGG	8 cut(s)	50, 249, 1027, 1442, 1812, 2014, 2228, 2428
Bst4CI	ACNGT	2 cut(s)	145, 2064
BstACI	GRCGYC	1 cut(s)	2288
BstAFI	CTTAAG	1 cut(s)	458
BstAPI	GCANNNNNTGC	2 cut(s)	1286, 2527
BstAUI	TGTACA	1 cut(s)	850
BstC8I	GCNNGC	6 cut(s)	583, 699, 1724, 2252, 2269, 2510
BstDSI	CCRYGG	1 cut(s)	2398
BstF5I	GGATG	2 cut(s)	2035, 2140
BstH2I	RGCGCY	1 cut(s)	255
BstHHI	GCGC	2 cut(s)	254, 1058
BstKTI	GATC	9 cut(s)	30, 47, 102, 531, 632, 805, 1087, 1109, 2308
BstMAI	GTCTC	1 cut(s)	69
BstMBI	GATC	9 cut(s)	27, 44, 99, 528, 629, 802, 1084, 1106, 2305
BstNI	CCWGG	8 cut(s)	50, 249, 1027, 1442, 1812, 2014, 2228, 2428
BstNSI	RCATGY	1 cut(s)	542
BstSCI	CCNGG	9 cut(s)	48, 247, 1025, 1379, 1440, 1810, 2012, 2226, 2426
BstSFI	CTRYAG	3 cut(s)	885, 1938, 2301
BstV1I	GCAGC	1 cut(s)	1264
BstV2I	GAAGAC	3 cut(s)	129, 545, 1040
BstX2I	RGATCY	4 cut(s)	44, 629, 1084, 2305
BstXI	CCANNNNNNTGG	1 cut(s)	317
BstYI	RGATCY	4 cut(s)	44, 629, 1084, 2305
BstZ17I	GTATAC	2 cut(s)	357, 1850
Bsu15I	ATCGAT	1 cut(s)	216
BsuI	GTATCC	1 cut(s)	2137
BsuRI	GGCC	9 cut(s)	207, 771, 891, 974, 1025, 1252, 1866, 2397, 2414
BsuTUI	ATCGAT	1 cut(s)	216
BtgI	CCRYGG	1 cut(s)	2398
BtrI	CACGTC	1 cut(s)	127
BtsCI	GGATG	2 cut(s)	2035, 2140
BtsI	GCAGTG	1 cut(s)	967
BtsIMutI	CAGTG	6 cut(s)	201, 370, 662, 853, 967, 2298
BveI	ACCTGC	1 cut(s)	2521
Cac8I	GCNNGC	6 cut(s)	583, 699, 1724, 2252, 2269, 2510
CaiI	CAGNNNCTG	2 cut(s)	1067, 1937
CfoI	GCGC	2 cut(s)	254, 1058
Cfr13I	GGNCC	8 cut(s)	141, 206, 244, 890, 972, 1784, 1797, 2412
ClaI	ATCGAT	1 cut(s)	216
CpoI	CGGWCCG	1 cut(s)	141
CseI	GACGC	1 cut(s)	122
Csp6I	GTAC	5 cut(s)	507, 520, 705, 851, 2236
CspCI	CAANNNNNGTGG	2 cut(s)	855, 890
CspI	CGGWCCG	1 cut(s)	141
CviAII	CATG	5 cut(s)	539, 1320, 1687, 2399, 2539
CviQI	GTAC	5 cut(s)	507, 520, 705, 851, 2236
DpnI	GATC	9 cut(s)	29, 46, 101, 530, 631, 804, 1086, 1108, 2307
DpnII	GATC	9 cut(s)	27, 44, 99, 528, 629, 802, 1084, 1106, 2305
DrdI	GACNNNNNNGTC	1 cut(s)	962
DseDI	GACNNNNNNGTC	1 cut(s)	962
EaeI	YGGCCR	2 cut(s)	1864, 2395
EciI	GGCGGA	1 cut(s)	51
Ecl136II	GAGCTC	1 cut(s)	1808
Eco130I	CCWWGG	3 cut(s)	316, 919, 2398
Eco147I	AGGCCT	1 cut(s)	1025
Eco24I	GRGCYC	1 cut(s)	1810
Eco47I	GGWCC	4 cut(s)	141, 244, 1784, 1797
Eco53kI	GAGCTC	1 cut(s)	1808
Eco57I	CTGAAG	4 cut(s)	346, 580, 692, 1761
Eco88I	CYCGRG	3 cut(s)	239, 1604, 2081
EcoICRI	GAGCTC	1 cut(s)	1808
EcoO109I	RGGNCCY	4 cut(s)	244, 890, 972, 1784
EcoRII	CCWGG	8 cut(s)	48, 247, 1025, 1440, 1810, 2012, 2226, 2426
EcoT14I	CCWWGG	3 cut(s)	316, 919, 2398
EcoT22I	ATGCAT	1 cut(s)	1325
EcoT38I	GRGCYC	1 cut(s)	1810
ErhI	CCWWGG	3 cut(s)	316, 919, 2398
FaeI	CATG	5 cut(s)	542, 1323, 1690, 2402, 2542
FalI	AAGNNNNNCTT	4 cut(s)	864, 896, 1222, 1254
FaqI	GGGAC	5 cut(s)	230, 333, 877, 891, 1810
FatI	CATG	5 cut(s)	538, 1319, 1686, 2398, 2538
FauI	CCCGC	2 cut(s)	590, 1767
FauNDI	CATATG	2 cut(s)	905, 1489
FblI	GTMKAC	3 cut(s)	356, 1849, 2205
Fnu4HI	GCNGC	2 cut(s)	1173, 1278
FokI	GGATG	2 cut(s)	2042, 2147
FriOI	GRGCYC	1 cut(s)	1810
Fsp4HI	GCNGC	2 cut(s)	1173, 1278
FspBI	CTAG	5 cut(s)	425, 1290, 1505, 1838, 2268
FspI	TGCGCA	1 cut(s)	1057
GlaI	GCGC	2 cut(s)	253, 1057
GluI	GCNGC	2 cut(s)	1173, 1278
GsuI	CTGGAG	2 cut(s)	1660, 1794
HaeII	RGCGCY	1 cut(s)	255
HaeIII	GGCC	9 cut(s)	207, 771, 891, 974, 1025, 1252, 1866, 2397, 2414
HapII	CCGG	3 cut(s)	139, 1381, 1969
HgaI	GACGC	1 cut(s)	122
HhaI	GCGC	2 cut(s)	254, 1058
Hin1I	GRCGYC	1 cut(s)	2288
Hin1II	CATG	5 cut(s)	542, 1323, 1690, 2402, 2542
Hin6I	GCGC	2 cut(s)	252, 1056
HinP1I	GCGC	2 cut(s)	252, 1056
HindIII	AAGCTT	3 cut(s)	592, 677, 1209
HpaII	CCGG	3 cut(s)	139, 1381, 1969
HphI	GGTGA	5 cut(s)	248, 344, 509, 727, 2039
Hpy166II	GTNNAC	6 cut(s)	357, 851, 988, 1850, 1894, 2206
Hpy8I	GTNNAC	6 cut(s)	357, 851, 988, 1850, 1894, 2206
Hpy99I	CGWCG	3 cut(s)	107, 110, 2100
HpyAV	CCTTC	8 cut(s)	11, 282, 370, 494, 985, 1837, 2032, 2476
HpyCH4III	ACNGT	2 cut(s)	145, 2064
HpyCH4IV	ACGT	2 cut(s)	126, 2288
HpyCH4V	TGCA	8 cut(s)	416, 1280, 1298, 1323, 2007, 2484, 2498, 2530
HpySE526I	ACGT	2 cut(s)	126, 2288
Hsp92I	GRCGYC	1 cut(s)	2288
Hsp92II	CATG	5 cut(s)	542, 1323, 1690, 2402, 2542
HspAI	GCGC	2 cut(s)	252, 1056
Kzo9I	GATC	9 cut(s)	27, 44, 99, 528, 629, 802, 1084, 1106, 2305
LmnI	GCTCC	4 cut(s)	1813, 2110, 2194, 2242
Lsp1109I	GCAGC	1 cut(s)	1264
LweI	GCATC	5 cut(s)	222, 568, 1761, 2311, 2530
MaeI	CTAG	5 cut(s)	425, 1290, 1505, 1838, 2268
MaeII	ACGT	2 cut(s)	126, 2288
MaeIII	GTNAC	5 cut(s)	420, 733, 1534, 2045, 2064
MalI	GATC	9 cut(s)	29, 46, 101, 530, 631, 804, 1086, 1108, 2307
MbiI	CCGCTC	1 cut(s)	2113
MboI	GATC	9 cut(s)	27, 44, 99, 528, 629, 802, 1084, 1106, 2305
MfeI	CAATTG	1 cut(s)	1539
MflI	RGATCY	4 cut(s)	44, 629, 1084, 2305
MhlI	GDGCHC	1 cut(s)	1810
MlsI	TGGCCA	2 cut(s)	1866, 2397
MluNI	TGGCCA	2 cut(s)	1866, 2397
MlyI	GAGTC	5 cut(s)	47, 71, 86, 661, 2171
MmeI	TCCRAC	3 cut(s)	319, 1590, 1640
Mox20I	TGGCCA	2 cut(s)	1866, 2397
Mph1103I	ATGCAT	1 cut(s)	1325
MroXI	GAANNNNTTC	2 cut(s)	405, 2422
MscI	TGGCCA	2 cut(s)	1866, 2397
MseI	TTAA	7 cut(s)	390, 440, 446, 459, 1362, 2436, 2444
MslI	CAYNNNNRTG	1 cut(s)	261
Msp20I	TGGCCA	2 cut(s)	1866, 2397
MspA1I	CMGCKG	1 cut(s)	761
MspCI	CTTAAG	1 cut(s)	458
MspI	CCGG	3 cut(s)	139, 1381, 1969
MspR9I	CCNGG	9 cut(s)	50, 249, 1027, 1381, 1442, 1812, 2014, 2228, 2428
MunI	CAATTG	1 cut(s)	1539
MvaI	CCWGG	8 cut(s)	50, 249, 1027, 1442, 1812, 2014, 2228, 2428
NciI	CCSGG	1 cut(s)	1381
NcoI	CCATGG	1 cut(s)	2398
NdeI	CATATG	2 cut(s)	905, 1489
NdeII	GATC	9 cut(s)	27, 44, 99, 528, 629, 802, 1084, 1106, 2305
NheI	GCTAGC	1 cut(s)	2267
NlaIII	CATG	5 cut(s)	542, 1323, 1690, 2402, 2542
NmeAIII	GCCGAG	2 cut(s)	208, 2271
NmuCI	GTSAC	2 cut(s)	420, 2045
NsbI	TGCGCA	1 cut(s)	1057
NsiI	ATGCAT	1 cut(s)	1325
NspI	RCATGY	1 cut(s)	542
PaeR7I	CTCGAG	2 cut(s)	239, 2081
PceI	AGGCCT	1 cut(s)	1025
PcsI	WCGNNNNNNNCGW	3 cut(s)	180, 222, 237
PdmI	GAANNNNTTC	2 cut(s)	405, 2422
PfeI	GAWTC	7 cut(s)	152, 196, 218, 1189, 2150, 2372, 2423
PflMI	CCANNNNNTGG	2 cut(s)	1817, 1900
PfoI	TCCNGGA	2 cut(s)	1379, 1810
PkrI	GCNGC	2 cut(s)	1174, 1279
PleI	GAGTC	5 cut(s)	47, 70, 86, 661, 2170
PpsI	GAGTC	5 cut(s)	47, 70, 86, 661, 2170
PpuMI	RGGWCCY	2 cut(s)	244, 1784
PshBI	ATTAAT	2 cut(s)	390, 446
PsiI	TTATAA	1 cut(s)	836
Psp124BI	GAGCTC	1 cut(s)	1810
Psp5II	RGGWCCY	2 cut(s)	244, 1784
Psp6I	CCWGG	8 cut(s)	48, 247, 1025, 1440, 1810, 2012, 2226, 2426
PspGI	CCWGG	8 cut(s)	48, 247, 1025, 1440, 1810, 2012, 2226, 2426
PspPI	GGNCC	8 cut(s)	141, 206, 244, 890, 972, 1784, 1797, 2412
PspPPI	RGGWCCY	2 cut(s)	244, 1784
PspXI	VCTCGAGB	1 cut(s)	239
PstNI	CAGNNNCTG	2 cut(s)	1067, 1937
PsuI	RGATCY	4 cut(s)	44, 629, 1084, 2305
PvuII	CAGCTG	1 cut(s)	761
RsaI	GTAC	5 cut(s)	508, 521, 706, 852, 2237
RsaNI	GTAC	5 cut(s)	507, 520, 705, 851, 2236
RseI	CAYNNNNRTG	1 cut(s)	261
Rsr2I	CGGWCCG	1 cut(s)	141
RsrII	CGGWCCG	1 cut(s)	141
SacI	GAGCTC	1 cut(s)	1810
SaqAI	TTAA	7 cut(s)	390, 440, 446, 459, 1362, 2436, 2444
SatI	GCNGC	2 cut(s)	1173, 1278
Sau3AI	GATC	9 cut(s)	27, 44, 99, 528, 629, 802, 1084, 1106, 2305
Sau96I	GGNCC	8 cut(s)	141, 206, 244, 890, 972, 1784, 1797, 2412
SchI	GAGTC	5 cut(s)	47, 71, 86, 661, 2171
ScrFI	CCNGG	9 cut(s)	50, 249, 1027, 1381, 1442, 1812, 2014, 2228, 2428
SduI	GDGCHC	1 cut(s)	1810
SfaNI	GCATC	5 cut(s)	222, 568, 1761, 2311, 2530
SfcI	CTRYAG	3 cut(s)	885, 1938, 2301
Sfr274I	CTCGAG	2 cut(s)	239, 2081
SinI	GGWCC	4 cut(s)	141, 244, 1784, 1797
SlaI	CTCGAG	2 cut(s)	239, 2081
SmiMI	CAYNNNNRTG	1 cut(s)	261
SmlI	CTYRAG	9 cut(s)	239, 458, 623, 653, 967, 1727, 2081, 2173, 2470
SmoI	CTYRAG	9 cut(s)	239, 458, 623, 653, 967, 1727, 2081, 2173, 2470
SpeI	ACTAGT	1 cut(s)	424
SseBI	AGGCCT	1 cut(s)	1025
SsiI	CCGC	6 cut(s)	36, 136, 583, 1173, 1774, 2113
SspI	AATATT	2 cut(s)	444, 1273
SspMI	CTAG	5 cut(s)	425, 1290, 1505, 1838, 2268
SstI	GAGCTC	1 cut(s)	1810
StuI	AGGCCT	1 cut(s)	1025
StyD4I	CCNGG	9 cut(s)	48, 247, 1025, 1379, 1440, 1810, 2012, 2226, 2426
StyI	CCWWGG	3 cut(s)	316, 919, 2398
TaaI	ACNGT	2 cut(s)	145, 2064
TaiI	ACGT	2 cut(s)	129, 2291
TaqI	TCGA	8 cut(s)	60, 102, 216, 225, 231, 240, 1005, 2082
TatI	WGTACW	3 cut(s)	519, 850, 2235
TauI	GCSGC	1 cut(s)	1175
TfiI	GAWTC	7 cut(s)	152, 196, 218, 1189, 2150, 2372, 2423
Tru1I	TTAA	7 cut(s)	390, 440, 446, 459, 1362, 2436, 2444
Tru9I	TTAA	7 cut(s)	390, 440, 446, 459, 1362, 2436, 2444
TscAI	CASTG	6 cut(s)	208, 370, 669, 853, 967, 2298
TseFI	GTSAC	2 cut(s)	420, 2045
TseI	GCWGC	1 cut(s)	1277
Tsp45I	GTSAC	2 cut(s)	420, 2045
TspDTI	ATGAA	7 cut(s)	279, 414, 892, 1252, 1308, 1684, 1749
TspRI	CASTG	6 cut(s)	208, 370, 669, 853, 967, 2298
Van91I	CCANNNNNTGG	2 cut(s)	1817, 1900
Vha464I	CTTAAG	1 cut(s)	458
VpaK11BI	GGWCC	4 cut(s)	141, 244, 1784, 1797
VspI	ATTAAT	2 cut(s)	390, 446
XapI	RAATTY	4 cut(s)	857, 1385, 2087, 2500
XceI	RCATGY	1 cut(s)	542
XhoI	CTCGAG	2 cut(s)	239, 2081
XmiI	GTMKAC	3 cut(s)	356, 1849, 2205
XmnI	GAANNNNTTC	2 cut(s)	405, 2422
XspI	CTAG	5 cut(s)	425, 1290, 1505, 1838, 2268
ZraI	GACGTC	1 cut(s)	2289
Zsp2I	ATGCAT	1 cut(s)	1325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.