Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000173

Orthogroup ID

OG0006583

Physical Location & Seq

Genomic Coordinates Reverse (-)

275006 .. 294928

Gene Structure 19923 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_173G00435020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2961 bp

ATGGAGTCAACACTGAACGCGAGCACATCGACCACATTGGCTCTGCTCACCGTTACGAAAGCCCTGAACCGCCGACTTTGCAAGATCTTTCCGAGTCATCAACCCCTCGCGAGTCGATTGATAGCTCGCAGGCTCACTTGCAACTACGGCGGCTTTCATAGGCAGAGGTCTTTCTCTTCATCGACGCTGAGAAGGAGCCTCTGCGTGGTTGATCCTCCGACACGGCGTCGTTTAGAGTGCGTTGCGAGCAACCATGCGTCATTTGCTTCCGGCGGTGGAAATGGTGGCTTCGGCGGCGAGAGTGGTGGCAGCGGCGGCGATGGTGGAGGTAGTTCGGACGGTGGTGATGCCAAGTCCAAGGTCGTTGCTTCTGGGGGCGATGACGTCTCGGCGGTCTCGACTGATGTCATACTGCTCGATGTTGGAGGAATGACATGCGGGGGATGTGCAGCAAGTGTGAAGCGAATTCTAGAAAGTCAACCACAGGTGTCATCTGCTAGTGTAAATCTTACGACTGAGGTGGCAATTGTCTGGCCTGTGTCTGAAGCCAAGCTCTCACCAAACTGGCAAAAGCAGTTGGGAGAGACACTTGCAAACCATTTGACTAATTGTGGTTTCAATTCTAACATTCGTGCGTGCTGGGTTAAGTGGCAGGTCAGGGAGCTACACAAGGAGATATATCACCATAGAACTGCAAAACATTTCTTGTCAGGATCAACCATAATTCTTTATGATTCAGGAAGAAACAGTTTTCGTAAGATGTTTGAAAGGAAAATTGAAGATAAGCGCAAACGCCTGAAAGAAAGTGGTCATGAGCTTGCTTTCTCTTGGGCTCTATGTGCTGTCTGCCTAGTTGGTCATCTTTCTCATTTCCTTGGAGCTAAGGCTTCATGGATCCATGCTTTTCATTCAACAGGATTCCATCTGTCTCTAGCTTTATTCACATTGCTTGGTCCTGGGCGTCGGCTTATTCTTGATGGTTTGAAGAGTCTTGTTAAAGGGGCTCCAAACATGAACACTTTAGTTGGTCTTGGGGCTTTATCTTCATTTACAGTCAGTTCATTAGCTGCCTTTATACCAAAGCTGGGTTGGAAGACTTTCTTTGAGGAACCAATAATGTTGATAGCATTCGTGCTGCTGGGGAGGAATCTTGAACAAAGAGCTAAAATCAAAGCAAGCAGTGATATGACTGAGCTTCTTAGTATTTTACCAGCAAAAGCTCGTCTTCTGGTCAATGATGGTGTTAAAGAGTCGGAAACAATAGTTGAAGTTCCATCTAACAGTCTCTGTGTAGGAGATCAAGTTGTTGTATTACCTGGAGACCGTGTTCCAGTAGATGGAATTGTTATAGCTGGTAGAAGTACCATTGATGAGTCAAGTTTTACTGGAGAGCCATTGCCTGTGACCAAACTACCTGGGAGTCAAGTTGCAGCTGGAAGTATAAATCTGAATGGAAGTCTTACGATTGTAGTGCAGAGACCAGGTGGTGAGACTGCTATGGCAGACATTGTTCGTCTAGTAGAAGAAGCACAGAGTCGAGAGGCTCCAGTCCAGCGTCTGGCTGACAAGGTATCTGGGCATTTTACATATGGAGTAATGGGACTCTCTGCGGCTACATTTTTGTTCTGGAGTTTGATTGGTGGACGTATTTTACCTGCTGTTCTTCAAGGAGGAAATTCAGTTTCTTTAGCATTGCAACTCTCTTGCAGTGTTCTGGTTGTTGCTTGTCCATGTGCCCTTGGGCTGGCTACACCTACAGCTGTGCTGGTAGGAACTTCATTAGGAGCCACAAGAGGACTGCTTTTGCGTGGTGGAAATGTTTTAGAGAAGTTTTCAATGGTGAACACTGTAGTATTTGATAAAACAGGGACTCTGACAATGGGCAAGCCAGTTGTGACAAAAATTTTGACTCCCAAACATGCAGAAGTTACTGACGTAGAAGAAAAGTCGAACCATACTTGGTCAGACCTTGAGGTTCTCAAGTTTGCTGCTGGAGTAGAATCAAATACAATTCATCCTGTTGGGAAAGCTATTGTGGAAGCCGCTCGGGCTGTTAATTGTCAGAATATACAGGTTGCAGATGGAACATTTATAGAAGAACCTGGCTCTGGTGCTGTTGCTATTATTGAAGATAAAAAGGTTTCTGTTGGGACTTTGGACTGGGTCCAACGGCATGGAGTCAATGAGAATCCATTTGAAGAAGTTGAGGCCCATAAGAGTCAATCTGTTGTGTATGTTGCCATTGATAGTACTCTTGCTGGTCTTATTTATTTTGAGGATCAGATAAGAGATGATGCCGGACAAGTTGTTAAATCCTTATCTAGCCAAGGGATTTCTGTATACATGCTATCTGGGGACAAAACAGAAAACGCAGAGTACGTTGCATCTGTAGTTGGTATTCCAAAAGAGAAGGTAATATCTGGTGTTAAACCAAGGGAAAAGAAGAAGTTCATAACTGAACTTCAAAATGATCAAAATATTGTTGCCATGGTTGGTGATGGAATCAATGATGCTGCTGCCTTGGCTTCATCCCATGTTGGGATTGCCATGGGTGGTGGTGTTGGAGCTGCTAGTGAGGCCTCCTCTATTGTTCTATTGGGCAATAGACTTTCACAGTTGGTTGATGCTTTGGAGTTGAGCAGGCTAACCATGGTGACTGTGAAGCAAAATCTTTGGTGGGCTTTTGCATACAACATTGTTGGGCTTCCAATTGCTGCTGGAGTATTACTGCCTGTAACTGGGACCATACTGACTCCGTCAATTGCTGGAGCTCTCATGGGCTTGAGTTCTGTAGGGGTTATGGCAAATTCGTTGTTCCTAAGATACAAGTTTTCATTAAAGCAGGAACGAAGATATAAAAGATCAGCAGGCACTAAAACTAACAGAGTTTCCAATATTATCATGGACAAGAGTGCGGGGGAAAAGCATCCCGATTCTGATGAAAGATGGAAAGGAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005375 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006810 GO:0006811 GO:0006812 GO:0006825 GO:0008150 GO:0008152 GO:0008324 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009767 GO:0009941 GO:0009987 GO:0015075 GO:0015318 GO:0015979 GO:0016530 GO:0016531 GO:0019684 GO:0022857 GO:0022890 GO:0022900 GO:0030001 GO:0031967 GO:0031975 GO:0034220 GO:0035434 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046873 GO:0046914 GO:0046915 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055070 GO:0055076 GO:0055080 GO:0055085 GO:0055114 GO:0065007 GO:0065008 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0140104

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

E1-E2_ATPase HMA Hydrolase

Protein Analysis

986

Amino Acids

104.86

Weight (kDa)

8.88

Isoelectric Point (pI)

38.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	139 - 183	7.4e-09	Heavy-metal-associated domain
E1-E2_ATPase	PF00122	405 - 508	1.7e-25	P-type ATPase actuator domain
Hydrolase	PF00702	615 - 843	2.7e-29	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006583)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33520 AT4G33520
fragaria_vesca	FvH4_2g11930 FvH4_2g11930 FvH4_2g11930 FvH4_2g11930 FvH4_2g11930 FvH4_2g11930 FvH4_2g11930 FvH4_2g11930 FvH4_2g11930
malus_domestica	MD05G1044900.v1.1
prunus_persica	Prupe.8G060400_v2.0.a1
pyrus_communis	pycom05g03740
rosa_chinensis	RchiOBHm_Chr6g0271821
rosa_laevigata	RLG00000013712
rosa_multiflora	Rmu_sc0002396.1_g000018
rosa_roxburghii	Rroxscaffold_173G00435020 Rroxscaffold_7G00196710
rosa_rugosa	Rorug06G0063300 Rorug06G0063400
rosa_samantha	Rh6AG181500 Rh6BG186000 Rh6CG182200 Rh6DG173300
rosa_wichuraiana	Rw6G015660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	387
Acc36I	ACCTGC	2 cut(s)	643, 1663
AccB7I	CCANNNNNTGG	2 cut(s)	1337, 1558
AccBSI	CCGCTC	1 cut(s)	2045
AccI	GTMKAC	1 cut(s)	2340
AccII	CGCG	2 cut(s)	20, 110
AclWI	GGATC	5 cut(s)	206, 721, 889, 902, 2286
AcsI	RAATTY	4 cut(s)	465, 1675, 1902, 2806
AcuI	CTGAAG	1 cut(s)	564
AcyI	GRCGYC	3 cut(s)	226, 384, 961
AfaI	GTAC	3 cut(s)	1363, 2251, 2378
AfiI	CCNNNNNNNGG	8 cut(s)	205, 1085, 1337, 1558, 1744, 2108, 2538, 2738
AhdI	GACNNNNNGTC	1 cut(s)	225
AjnI	CCWGG	5 cut(s)	955, 1315, 1414, 1480, 2101
AloI	GAACNNNNNNTCC	2 cut(s)	1311, 1343
Alw21I	GWGCWC	2 cut(s)	26, 2773
Alw26I	GTCTC	8 cut(s)	391, 400, 578, 933, 1289, 1314, 1471, 1484
AlwI	GGATC	5 cut(s)	206, 721, 889, 902, 2286
AlwNI	CAGNNNCTG	2 cut(s)	1287, 1558
Ama87I	CYCGRG	1 cut(s)	2046
AoxI	GGCC	3 cut(s)	533, 2208, 2577
ApoI	RAATTY	4 cut(s)	465, 1675, 1902, 2806
ArsI	GACNNNNNNTTYG	2 cut(s)	1888, 1920
Asp700I	GAANNNNTTC	2 cut(s)	1097, 2447
AspLEI	GCGC	1 cut(s)	789
AspS9I	GGNCC	4 cut(s)	953, 2164, 2209, 2742
AsuHPI	GGTGA	8 cut(s)	40, 356, 549, 674, 1499, 1852, 2507, 2665
AvaI	CYCGRG	1 cut(s)	2046
AvaII	GGWCC	3 cut(s)	953, 2164, 2742
BaeGI	GKGCMC	1 cut(s)	1738
BamHI	GGATCC	1 cut(s)	894
BanII	GRGCYC	3 cut(s)	835, 1006, 2773
BbsI	GAAGAC	2 cut(s)	1100, 1217
Bbv12I	GWGCWC	2 cut(s)	26, 2773
BccI	CCATC	9 cut(s)	314, 930, 971, 1232, 1282, 1331, 2075, 2492, 2940
BceAI	ACGGC	3 cut(s)	163, 239, 2186
BcgI	CGANNNNNNTGC	2 cut(s)	1453, 1487
BciT130I	CCWGG	5 cut(s)	957, 1317, 1416, 1482, 2103
BclI	TGATCA	1 cut(s)	2470
BcoDI	GTCTC	8 cut(s)	391, 400, 578, 933, 1289, 1314, 1471, 1484
BfaI	CTAG	7 cut(s)	470, 498, 851, 932, 1517, 2322, 2571
BfmI	CTRYAG	4 cut(s)	1755, 1848, 2388, 2790
BfuAI	ACCTGC	2 cut(s)	643, 1663
BglI	GCCNNNNNGGC	1 cut(s)	2048
BglII	AGATCT	1 cut(s)	84
BmcAI	AGTACT	1 cut(s)	2251
Bme1390I	CCNGG	5 cut(s)	957, 1317, 1416, 1482, 2103
Bme18I	GGWCC	3 cut(s)	953, 2164, 2742
BmeRI	GACNNNNNGTC	1 cut(s)	225
BmeT110I	CYCGRG	1 cut(s)	2046
BmgT120I	GGNCC	4 cut(s)	953, 2164, 2209, 2742
BmiI	GGNNCC	8 cut(s)	197, 896, 1005, 1110, 1545, 1786, 2165, 2743
BmrFI	CCNGG	5 cut(s)	957, 1317, 1416, 1482, 2103
BmrI	ACTGGG	2 cut(s)	2170, 2748
BmsI	GCATC	6 cut(s)	337, 2284, 2393, 2500, 2614, 2935
BmuI	ACTGGG	2 cut(s)	2170, 2748
BoxI	GACNNNNGTC	1 cut(s)	404
BpiI	GAAGAC	2 cut(s)	1100, 1217
BplI	GAGNNNNNCTC	2 cut(s)	2567, 2599
BpmI	CTGGAG	7 cut(s)	1338, 1407, 1530, 1648, 2013, 2739, 2787
Bpu10I	CCTNAGC	1 cut(s)	882
BpuEI	CTTGAG	3 cut(s)	1964, 1991, 2803
BsaHI	GRCGYC	3 cut(s)	226, 384, 961
BsaI	GGTCTC	3 cut(s)	400, 1314, 1471
BsaXI	ACNNNNNCTCC	4 cut(s)	1287, 1311, 1317, 1341
Bsc4I	CCNNNNNNNGG	8 cut(s)	205, 1085, 1337, 1558, 1744, 2108, 2538, 2738
Bse1I	ACTGG	7 cut(s)	569, 1331, 1390, 1547, 1889, 2165, 2743
Bse3DI	GCAATG	3 cut(s)	944, 1394, 1691
BseBI	CCWGG	5 cut(s)	957, 1317, 1416, 1482, 2103
BseGI	GGATG	4 cut(s)	449, 2014, 2528, 2926
BseLI	CCNNNNNNNGG	8 cut(s)	205, 1085, 1337, 1558, 1744, 2108, 2538, 2738
BseMI	GCAATG	3 cut(s)	944, 1394, 1691
BseMII	CTCAG	3 cut(s)	179, 507, 1182
BseNI	ACTGG	7 cut(s)	569, 1331, 1390, 1547, 1889, 2165, 2743
BseRI	GAGGAG	1 cut(s)	2572
BseSI	GKGCMC	1 cut(s)	1738
BseYI	CCCAGC	3 cut(s)	639, 1084, 1138
BsgI	GTGCAG	2 cut(s)	468, 1493
Bsh1236I	CGCG	2 cut(s)	20, 110
BshFI	GGCC	3 cut(s)	535, 2210, 2579
BsiHKAI	GWGCWC	2 cut(s)	26, 2773
BsiHKCI	CYCGRG	1 cut(s)	2046
BsiSI	CCGG	2 cut(s)	270, 2298
BslFI	GGGAC	5 cut(s)	1614, 1882, 2164, 2369, 2755
BslI	CCNNNNNNNGG	8 cut(s)	205, 1085, 1337, 1558, 1744, 2108, 2538, 2738
BsmAI	GTCTC	8 cut(s)	391, 400, 578, 933, 1289, 1314, 1471, 1484
BsmBI	CGTCTC	1 cut(s)	391
BsmFI	GGGAC	5 cut(s)	1614, 1882, 2164, 2369, 2755
BsmI	GAATGC	1 cut(s)	1127
BsnI	GGCC	3 cut(s)	535, 2210, 2579
Bso31I	GGTCTC	3 cut(s)	400, 1314, 1471
BsoBI	CYCGRG	1 cut(s)	2046
Bsp1286I	GDGCHC	5 cut(s)	26, 835, 1006, 1738, 2773
Bsp143I	GATC	8 cut(s)	84, 211, 713, 894, 1297, 2278, 2470, 2861
Bsp19I	CCATGG	3 cut(s)	2487, 2547, 2649
Bsp68I	TCGCGA	1 cut(s)	110
BspANI	GGCC	3 cut(s)	535, 2210, 2579
BspCNI	CTCAG	3 cut(s)	180, 508, 1183
BspFNI	CGCG	2 cut(s)	20, 110
BspHI	TCATGA	1 cut(s)	811
BspLI	GGNNCC	8 cut(s)	197, 896, 1005, 1110, 1545, 1786, 2165, 2743
BspMI	ACCTGC	2 cut(s)	643, 1663
BspPI	GGATC	5 cut(s)	206, 721, 889, 902, 2286
BspTNI	GGTCTC	3 cut(s)	400, 1314, 1471
BsrBI	CCGCTC	1 cut(s)	2045
BsrDI	GCAATG	3 cut(s)	944, 1394, 1691
BsrI	ACTGG	7 cut(s)	569, 1331, 1390, 1547, 1889, 2165, 2743
BssMI	GATC	8 cut(s)	84, 211, 713, 894, 1297, 2278, 2470, 2861
BssNAI	GTATAC	1 cut(s)	2341
BssNI	GRCGYC	3 cut(s)	226, 384, 961
BssT1I	CCWWGG	9 cut(s)	357, 874, 1738, 2326, 2432, 2487, 2520, 2547, 2649
Bst1107I	GTATAC	1 cut(s)	2341
Bst2UI	CCWGG	5 cut(s)	957, 1317, 1416, 1482, 2103
Bst4CI	ACNGT	9 cut(s)	52, 341, 749, 1054, 1283, 1325, 1849, 2616, 2659
Bst6I	CTCTTC	2 cut(s)	181, 980
BstACI	GRCGYC	3 cut(s)	226, 384, 961
BstDEI	CTNAG	6 cut(s)	188, 516, 882, 1191, 1199, 2819
BstDSI	CCRYGG	3 cut(s)	2487, 2547, 2649
BstF5I	GGATG	4 cut(s)	449, 2014, 2528, 2926
BstFNI	CGCG	2 cut(s)	20, 110
BstHHI	GCGC	1 cut(s)	789
BstKTI	GATC	8 cut(s)	87, 214, 716, 897, 1300, 2281, 2473, 2864
BstMAI	GTCTC	8 cut(s)	391, 400, 578, 933, 1289, 1314, 1471, 1484
BstMBI	GATC	8 cut(s)	84, 211, 713, 894, 1297, 2278, 2470, 2861
BstNI	CCWGG	5 cut(s)	957, 1317, 1416, 1482, 2103
BstNSI	RCATGY	3 cut(s)	438, 1922, 2347
BstPAI	GACNNNNGTC	1 cut(s)	404
BstSCI	CCNGG	5 cut(s)	955, 1315, 1414, 1480, 2101
BstSFI	CTRYAG	4 cut(s)	1755, 1848, 2388, 2790
BstSLI	GKGCMC	1 cut(s)	1738
BstUI	CGCG	2 cut(s)	20, 110
BstV2I	GAAGAC	2 cut(s)	1100, 1217
BstX2I	RGATCY	2 cut(s)	84, 894
BstXI	CCANNNNNNTGG	1 cut(s)	2174
BstYI	RGATCY	2 cut(s)	84, 894
BstZ17I	GTATAC	1 cut(s)	2341
BsuRI	GGCC	3 cut(s)	535, 2210, 2579
BtgI	CCRYGG	3 cut(s)	2487, 2547, 2649
BtgZI	GCGATG	2 cut(s)	333, 393
BtsCI	GGATG	4 cut(s)	449, 2014, 2528, 2926
BtsI	GCAGTG	2 cut(s)	1186, 1714
BtsIMutI	CAGTG	4 cut(s)	11, 1186, 1714, 1845
BtuMI	TCGCGA	1 cut(s)	110
BveI	ACCTGC	2 cut(s)	643, 1663
CaiI	CAGNNNCTG	2 cut(s)	1287, 1558
CciI	TCATGA	1 cut(s)	811
CfoI	GCGC	1 cut(s)	789
Cfr13I	GGNCC	4 cut(s)	953, 2164, 2209, 2742
CseI	GACGC	5 cut(s)	193, 215, 246, 950, 1544
CsiI	ACCWGGT	1 cut(s)	1480
Csp6I	GTAC	3 cut(s)	1362, 2250, 2377
CviQI	GTAC	3 cut(s)	1362, 2250, 2377
DdeI	CTNAG	6 cut(s)	188, 516, 882, 1191, 1199, 2819
DpnI	GATC	8 cut(s)	86, 213, 715, 896, 1299, 2280, 2472, 2863
DpnII	GATC	8 cut(s)	84, 211, 713, 894, 1297, 2278, 2470, 2861
DriI	GACNNNNNGTC	1 cut(s)	225
Eam1104I	CTCTTC	2 cut(s)	181, 980
Eam1105I	GACNNNNNGTC	1 cut(s)	225
EarI	CTCTTC	2 cut(s)	181, 980
Ecl136II	GAGCTC	1 cut(s)	2771
Eco130I	CCWWGG	9 cut(s)	357, 874, 1738, 2326, 2432, 2487, 2520, 2547, 2649
Eco147I	AGGCCT	1 cut(s)	2579
Eco24I	GRGCYC	3 cut(s)	835, 1006, 2773
Eco31I	GGTCTC	3 cut(s)	400, 1314, 1471
Eco47I	GGWCC	3 cut(s)	953, 2164, 2742
Eco53kI	GAGCTC	1 cut(s)	2771
Eco57I	CTGAAG	1 cut(s)	564
Eco88I	CYCGRG	1 cut(s)	2046
EcoICRI	GAGCTC	1 cut(s)	2771
EcoRI	GAATTC	1 cut(s)	465
EcoRII	CCWGG	5 cut(s)	955, 1315, 1414, 1480, 2101
EcoT14I	CCWWGG	9 cut(s)	357, 874, 1738, 2326, 2432, 2487, 2520, 2547, 2649
EcoT38I	GRGCYC	3 cut(s)	835, 1006, 2773
ErhI	CCWWGG	9 cut(s)	357, 874, 1738, 2326, 2432, 2487, 2520, 2547, 2649
Esp3I	CGTCTC	1 cut(s)	391
FalI	AAGNNNNNCTT	4 cut(s)	1085, 1117, 1209, 1241
FaqI	GGGAC	5 cut(s)	1614, 1882, 2164, 2369, 2755
FauI	CCCGC	2 cut(s)	431, 2908
FauNDI	CATATG	1 cut(s)	1588
FbaI	TGATCA	1 cut(s)	2470
FblI	GTMKAC	1 cut(s)	2340
FokI	GGATG	4 cut(s)	456, 2001, 2515, 2913
FriOI	GRGCYC	3 cut(s)	835, 1006, 2773
FspBI	CTAG	7 cut(s)	470, 498, 851, 932, 1517, 2322, 2571
GlaI	GCGC	1 cut(s)	788
GsaI	CCCAGC	3 cut(s)	643, 1088, 1142
GsuI	CTGGAG	7 cut(s)	1338, 1407, 1530, 1648, 2013, 2739, 2787
HaeIII	GGCC	3 cut(s)	535, 2210, 2579
HapII	CCGG	2 cut(s)	270, 2298
HgaI	GACGC	5 cut(s)	193, 215, 246, 950, 1544
HhaI	GCGC	1 cut(s)	789
Hin1I	GRCGYC	3 cut(s)	226, 384, 961
Hin6I	GCGC	1 cut(s)	787
HinP1I	GCGC	1 cut(s)	787
HincII	GTYRAC	2 cut(s)	9, 479
HindII	GTYRAC	2 cut(s)	9, 479
HpaII	CCGG	2 cut(s)	270, 2298
HphI	GGTGA	8 cut(s)	40, 356, 549, 674, 1499, 1852, 2507, 2665
Hpy166II	GTNNAC	5 cut(s)	9, 479, 1643, 1843, 2341
Hpy8I	GTNNAC	5 cut(s)	9, 479, 1643, 1843, 2341
Hpy99I	CGWCG	3 cut(s)	187, 231, 966
HpyAV	CCTTC	2 cut(s)	186, 2404
HpyCH4III	ACNGT	9 cut(s)	52, 341, 749, 1054, 1283, 1325, 1849, 2616, 2659
HpyCH4IV	ACGT	4 cut(s)	384, 1645, 1935, 2379
HpyF3I	CTNAG	6 cut(s)	188, 516, 882, 1191, 1199, 2819
HpySE526I	ACGT	4 cut(s)	384, 1645, 1935, 2379
Hsp92I	GRCGYC	3 cut(s)	226, 384, 961
HspAI	GCGC	1 cut(s)	787
Ksp22I	TGATCA	1 cut(s)	2470
Kzo9I	GATC	8 cut(s)	84, 211, 713, 894, 1297, 2278, 2470, 2861
LmnI	GCTCC	9 cut(s)	195, 661, 878, 1009, 1549, 1784, 2564, 2768, 2954
LweI	GCATC	6 cut(s)	337, 2284, 2393, 2500, 2614, 2935
MabI	ACCWGGT	1 cut(s)	1480
MaeI	CTAG	7 cut(s)	470, 498, 851, 932, 1517, 2322, 2571
MaeII	ACGT	4 cut(s)	384, 1645, 1935, 2379
MaeIII	GTNAC	6 cut(s)	52, 1402, 1894, 1927, 2653, 2734
MalI	GATC	8 cut(s)	86, 213, 715, 896, 1299, 2280, 2472, 2863
MbiI	CCGCTC	1 cut(s)	2045
MboI	GATC	8 cut(s)	84, 211, 713, 894, 1297, 2278, 2470, 2861
MfeI	CAATTG	3 cut(s)	525, 2709, 2760
MflI	RGATCY	2 cut(s)	84, 894
MhlI	GDGCHC	5 cut(s)	26, 835, 1006, 1738, 2773
MmeI	TCCRAC	6 cut(s)	242, 403, 1070, 1233, 2191, 2542
MroXI	GAANNNNTTC	2 cut(s)	1097, 2447
MseI	TTAA	7 cut(s)	645, 996, 1245, 2055, 2310, 2427, 2837
MspA1I	CMGCKG	3 cut(s)	312, 1433, 1760
MspI	CCGG	2 cut(s)	270, 2298
MspR9I	CCNGG	5 cut(s)	957, 1317, 1416, 1482, 2103
MunI	CAATTG	3 cut(s)	525, 2709, 2760
Mva1269I	GAATGC	1 cut(s)	1127
MvaI	CCWGG	5 cut(s)	957, 1317, 1416, 1482, 2103
MvnI	CGCG	2 cut(s)	20, 110
NcoI	CCATGG	3 cut(s)	2487, 2547, 2649
NdeI	CATATG	1 cut(s)	1588
NdeII	GATC	8 cut(s)	84, 211, 713, 894, 1297, 2278, 2470, 2861
NlaIV	GGNNCC	8 cut(s)	197, 896, 1005, 1110, 1545, 1786, 2165, 2743
NmeAIII	GCCGAG	1 cut(s)	368
NmuCI	GTSAC	3 cut(s)	1402, 1894, 2653
NruI	TCGCGA	1 cut(s)	110
NspI	RCATGY	3 cut(s)	438, 1922, 2347
PagI	TCATGA	1 cut(s)	811
PceI	AGGCCT	1 cut(s)	2579
PcsI	WCGNNNNNNNCGW	2 cut(s)	395, 2376
PctI	GAATGC	1 cut(s)	1127
PdmI	GAANNNNTTC	2 cut(s)	1097, 2447
PfeI	GAWTC	7 cut(s)	734, 918, 1147, 2000, 2188, 2502, 2933
PflFI	GACNNNGTC	2 cut(s)	2162, 2755
PflMI	CCANNNNNTGG	2 cut(s)	1337, 1558
PshAI	GACNNNNGTC	1 cut(s)	404
Psp124BI	GAGCTC	1 cut(s)	2773
Psp6I	CCWGG	5 cut(s)	955, 1315, 1414, 1480, 2101
PspFI	CCCAGC	3 cut(s)	639, 1084, 1138
PspGI	CCWGG	5 cut(s)	955, 1315, 1414, 1480, 2101
PspN4I	GGNNCC	8 cut(s)	197, 896, 1005, 1110, 1545, 1786, 2165, 2743
PspPI	GGNCC	4 cut(s)	953, 2164, 2209, 2742
PstNI	CAGNNNCTG	2 cut(s)	1287, 1558
PsuI	RGATCY	2 cut(s)	84, 894
PsyI	GACNNNGTC	2 cut(s)	2162, 2755
PvuII	CAGCTG	2 cut(s)	1433, 1760
RruI	TCGCGA	1 cut(s)	110
RsaI	GTAC	3 cut(s)	1363, 2251, 2378
RsaNI	GTAC	3 cut(s)	1362, 2250, 2377
SacI	GAGCTC	1 cut(s)	2773
SaqAI	TTAA	7 cut(s)	645, 996, 1245, 2055, 2310, 2427, 2837
Sau3AI	GATC	8 cut(s)	84, 211, 713, 894, 1297, 2278, 2470, 2861
Sau96I	GGNCC	4 cut(s)	953, 2164, 2209, 2742
ScaI	AGTACT	1 cut(s)	2251
ScrFI	CCNGG	5 cut(s)	957, 1317, 1416, 1482, 2103
SduI	GDGCHC	5 cut(s)	26, 835, 1006, 1738, 2773
SexAI	ACCWGGT	1 cut(s)	1480
SfaNI	GCATC	6 cut(s)	337, 2284, 2393, 2500, 2614, 2935
SfcI	CTRYAG	4 cut(s)	1755, 1848, 2388, 2790
SinI	GGWCC	3 cut(s)	953, 2164, 2742
SmlI	CTYRAG	3 cut(s)	1970, 1979, 2782
SmoI	CTYRAG	3 cut(s)	1970, 1979, 2782
SseBI	AGGCCT	1 cut(s)	2579
SspI	AATATT	2 cut(s)	2479, 2896
SspMI	CTAG	7 cut(s)	470, 498, 851, 932, 1517, 2322, 2571
SstI	GAGCTC	1 cut(s)	2773
StuI	AGGCCT	1 cut(s)	2579
StyD4I	CCNGG	5 cut(s)	955, 1315, 1414, 1480, 2101
StyI	CCWWGG	9 cut(s)	357, 874, 1738, 2326, 2432, 2487, 2520, 2547, 2649
TaaI	ACNGT	9 cut(s)	52, 341, 749, 1054, 1283, 1325, 1849, 2616, 2659
TaiI	ACGT	4 cut(s)	387, 1648, 1938, 2382
TaqI	TCGA	7 cut(s)	29, 115, 182, 398, 417, 1537, 1949
TatI	WGTACW	1 cut(s)	2249
TauI	GCSGC	6 cut(s)	153, 297, 315, 318, 1613, 2045
TfiI	GAWTC	7 cut(s)	734, 918, 1147, 2000, 2188, 2502, 2933
Tru1I	TTAA	7 cut(s)	645, 996, 1245, 2055, 2310, 2427, 2837
Tru9I	TTAA	7 cut(s)	645, 996, 1245, 2055, 2310, 2427, 2837
TscAI	CASTG	4 cut(s)	18, 1186, 1714, 1852
TseFI	GTSAC	3 cut(s)	1402, 1894, 2653
Tsp45I	GTSAC	3 cut(s)	1402, 1894, 2653
TspGWI	ACGGA	1 cut(s)	2745
TspRI	CASTG	4 cut(s)	18, 1186, 1714, 1852
Tth111I	GACNNNGTC	2 cut(s)	2162, 2755
Van91I	CCANNNNNTGG	2 cut(s)	1337, 1558
VpaK11BI	GGWCC	3 cut(s)	953, 2164, 2742
XapI	RAATTY	4 cut(s)	465, 1675, 1902, 2806
XbaI	TCTAGA	1 cut(s)	469
XceI	RCATGY	3 cut(s)	438, 1922, 2347
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1086, 2899
XmiI	GTMKAC	1 cut(s)	2340
XmnI	GAANNNNTTC	2 cut(s)	1097, 2447
XspI	CTAG	7 cut(s)	470, 498, 851, 932, 1517, 2322, 2571
ZraI	GACGTC	1 cut(s)	385
ZrmI	AGTACT	1 cut(s)	2251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.