Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0006583

Physical Location & Seq

Genomic Coordinates Forward (+)

8443188 .. 8482791

Gene Structure 39604 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0063300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2445 bp

ATGGCAATCGACATCGCAACCTTAGAAGAGAGGTACATTAATTCCTGCAGGAAGCACTGTGTTTCACCTAATGATGCAATTCTCTCTGTTCTGTTTAAGGCTGAGGTAAAAAAGTCTTGCAATGAGCTCTGTAGCCTGGACATTTCATTGGACCATCTTAAGGATGCTGAATTCCCACCACTTCTTGATTTATGTATGGAACTTGATGCTTCTGAGGTTGAAGCGGTTGACATACACAATGAATCATTGCATGTTTTGAATGGAAAATATGCGCTGTTGTTGATGCGTGCTATCAATCAAAAGCTTCGAGTTGTTGATCTCCAAGATTTGGCATTTGGAAAGGATTTCTTGAGGGATCTTTCACAGAGAGGTTTGACATGCCAAGTTTTAAACTTGAGATCTTCACATTTTCGGAAGCTCAATATGATGGGAGAGTTCCTGCGGATACACACCCTCAACCTTGACTTTAGTACTTCACTCACTAGTTTCCAGGAGGATTGTTTTTCTTGCATGCCCAATCTAATGTGCCTCTCTCTGTGCGAGACAAGAATTTTAAATCTCTGGACAACCATTGCTGCGCTTTCTAAACTCCCTTCTTTGGTTGAACTTCGGTTTCAGCATTGGTCATGCTGCAATGATGTTGGGCCTTATTCTGCATCATCTAGTGGGAAGTCACATCACAAAACTTATTCAAATCAGCAAAATAATGGTAGAGCATCATCCATTAATATTGGGGAACTAACAGACCAGTACTCAAGCACAGAAGAGGTGCTCAGGAATATGTTTTTGCTTAATAATGTGGTTATAAATGATGATGAAAGTAGGGCTGAGGATTCAGATGATAGCGAACTAGACTTTTCAAGCCCCCTGCAAGAATATGGTTCTGTGGAGCGTTTGTCAAATGTTTTTTCTGGAGGGAACAGACAGATCAATCAACTGAATGAGGATTCTCTTGATAACTTTCAGAATCAAAATGAGGCAGAGCCTTTAGCTGGTCCCTTCACAAAGTATATTGGAGACAATTCAGTGAAATATATTTCTTATCATGCTTCTCCAATATGTTTTGAGAAATATTATAGAGAGTACATGATAGCCTCATTACCTCGTTTGAGAATTTTAGATAACTTGCCAATTAGAAAGATTGATCAGGAAACTGCTAGGATGACATTTGCAGAATATTTTGAGCATGTACCATATCAAAGAAAGCCTAAAGAAAATGTCGTTAGTGTGTTACAAAAGCGTGAAATAAGATCAAGCCAAAATCATGTACAAAGTCCTGGGAAAAAAGTATCGAATCTCTATGGAAAGTCTCAATGCTTCTATACCAGGTCTCTTTCTGCTGCCAAAATGGGATCTTGTGTTTGGCCATTCTTGAACCCACTTTCTTTTTCAGGCAATACTCTGGTAGGTGAAAGTAAGAGCTTTCGTCCTAGGCAGTTTGAGTATCATCCATCCATCTCTAGCCTTATGGTCTTTGGAACATTAGATGGTGAAATAGTTGCAGTCAACCATGAGAATGGGAAAATTGTCAGTTATATCCCATCACTAGGAGCAATGAATAGTGTGCTGGGACTCTGTTGGCTTAAGAAGTATCCCTCTAAGCTAATAGCTGGTTCAGATAATGGCTCATTGAAATTGTACGACATCCATCATATGCGATCAATGGAAACAGGCATATATGGTGGTGCCGGGTTTGTCTCCTTTGACGAGTTTGACCAGTTGACATCTGTTCATGTTAATTCCACGGATGAGCTATTTCTTGCTAGTGGATACTCAAGAGACGTTGCCTTATATGACATTAGTAGTGGAAAGCGCTTACAGGTGTTTACTAATATGCATCGGGAGCATATTAATGTAATAAAGTTTGCAAACCATTCCCCATTTGTTTTCGCCACTTCTTCATTTGATCAGGATGTCAAGATGTGGGACCTAAGACAGAAACCAATAAGTCCTTGCTATTCCTCTTCAAGTTCTAGGGGTAATGTGATGGTTTGCTTTTCTCCTGATGATCACTATCTTCTTGTCTCAGCTGTTGATAACGAGGTTAGGCAACTTCTCGCAGTTGATGGGAGACTTCACTTGAATTTTGAGATAGCCTCTACAGGAAGTTCTCAGAACTACACTCGATCCTATTACATGAATGGAAGAGATTATATCATCAGTGGGAGTTGTGATGAACATGTTGTCCGCATATGCTGTGCTCAAACAGGGAGACGCCTGAGGGATATATCTTTGGAGGGAGGAGGAAGATCTAGGAGTTCTATGTTTGTTCAATCTTTGAGGGGTGATCCTTTCAGAGAATTCAACATGAGTATCTTGGCAGCCCATATGCGTCCAAGATCGAAGTCTGAAATTATCAAGGTCAATCTGCTAGCATCTAGAGATTATGCCAAGGAACACTTTGATGGTCAGCAGGCTTGCCCAACCAATAGGATGGGAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005375 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006810 GO:0006811 GO:0006812 GO:0006825 GO:0008150 GO:0008152 GO:0008324 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009767 GO:0009941 GO:0009987 GO:0015075 GO:0015318 GO:0015979 GO:0016530 GO:0016531 GO:0019684 GO:0022857 GO:0022890 GO:0022900 GO:0030001 GO:0031967 GO:0031975 GO:0034220 GO:0035434 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046873 GO:0046914 GO:0046915 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055070 GO:0055076 GO:0055080 GO:0055085 GO:0055114 GO:0065007 GO:0065008 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0140104

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

E1-E2_ATPase HMA Hydrolase

Protein Analysis

814

Amino Acids

91.96

Weight (kDa)

6.29

Isoelectric Point (pI)

47.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DHU1_N	PF20919	4 - 390	5.5e-88	DWD hypersensitive to UV-B 1, N-terminal
WD40_Prp19	PF24814	481 - 683	6.7e-10	Prp19 WD40 domain
Beta-prop_WDR36-Utp21_1st	PF25171	490 - 685	5.1e-12	WDR36/Utp21 first beta-propeller
Beta-prop_WDR5	PF25175	517 - 729	7.9e-17	WDR5 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	522 - 683	1.5e-09	WDR3 first beta-propeller domain
WD40_WDHD1_1st	PF24817	535 - 729	3.3e-06	WDHD1 first WD40 domain
WD40_CDC20-Fz	PF24807	571 - 682	2.6e-06	CDC20/Fizzy WD40 domain
Beta-prop_THOC3	PF25174	574 - 725	1.3e-10	THOC3 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006583)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33520 AT4G33520
fragaria_vesca	FvH4_2g11930 FvH4_2g11930 FvH4_2g11930 FvH4_2g11930 FvH4_2g11930 FvH4_2g11930 FvH4_2g11930 FvH4_2g11930 FvH4_2g11930
malus_domestica	MD05G1044900.v1.1
prunus_persica	Prupe.8G060400_v2.0.a1
pyrus_communis	pycom05g03740
rosa_chinensis	RchiOBHm_Chr6g0271821
rosa_laevigata	RLG00000013712
rosa_multiflora	Rmu_sc0002396.1_g000018
rosa_roxburghii	Rroxscaffold_173G00435020 Rroxscaffold_7G00196710
rosa_rugosa	Rorug06G0063300 Rorug06G0063400
rosa_samantha	Rh6AG181500 Rh6BG186000 Rh6CG182200 Rh6DG173300
rosa_wichuraiana	Rw6G015660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	806
AccB1I	GGYRCC	1 cut(s)	1685
AccB7I	CCANNNNNTGG	1 cut(s)	328
AciI	CCGC	3 cut(s)	224, 442, 2188
AclWI	GGATC	4 cut(s)	363, 1360, 2121, 2282
AcoI	YGGCCR	1 cut(s)	1364
AcsI	RAATTY	5 cut(s)	170, 549, 1113, 2083, 2300
AcyI	GRCGYC	1 cut(s)	2215
AfaI	GTAC	7 cut(s)	35, 472, 752, 1085, 1191, 1269, 1640
AfeI	AGCGCT	1 cut(s)	1814
AfiI	CCNNNNNNNGG	5 cut(s)	160, 328, 598, 992, 1547
AflII	CTTAAG	2 cut(s)	158, 1583
AflIII	ACRYGT	1 cut(s)	2179
AhlI	ACTAGT	1 cut(s)	482
AjnI	CCWGG	4 cut(s)	135, 489, 1276, 1325
AloI	GAACNNNNNNTCC	2 cut(s)	2169, 2201
AluBI	AGCT	9 cut(s)	127, 304, 418, 992, 1422, 1603, 1610, 1753, 2030
AluI	AGCT	9 cut(s)	127, 304, 418, 992, 1422, 1603, 1610, 1753, 2030
Alw21I	GWGCWC	3 cut(s)	129, 774, 2203
Alw26I	GTCTC	9 cut(s)	536, 1011, 1314, 1335, 1702, 1773, 2029, 2065, 2206
AlwI	GGATC	4 cut(s)	363, 1360, 2121, 2282
Aor51HI	AGCGCT	1 cut(s)	1814
AoxI	GGCC	2 cut(s)	644, 1364
ApeKI	GCWGC	4 cut(s)	575, 630, 1340, 2321
ApoI	RAATTY	5 cut(s)	170, 549, 1113, 2083, 2300
AseI	ATTAAT	3 cut(s)	39, 726, 1851
AspA2I	CCTAGG	1 cut(s)	1430
AspLEI	GCGC	3 cut(s)	274, 580, 1815
AspS9I	GGNCC	4 cut(s)	151, 644, 995, 1927
AsuC2I	CCSGG	1 cut(s)	1690
AsuHPI	GGTGA	4 cut(s)	57, 1421, 1502, 2297
AsuNHI	GCTAGC	1 cut(s)	2371
AvaII	GGWCC	3 cut(s)	151, 995, 1927
AvrII	CCTAGG	1 cut(s)	1430
AxyI	CCTNAGG	1 cut(s)	2219
BaeI	ACNNNNGTAYC	2 cut(s)	2296, 2329
BalI	TGGCCA	1 cut(s)	1366
BanI	GGYRCC	1 cut(s)	1685
BanII	GRGCYC	1 cut(s)	129
Bbv12I	GWGCWC	3 cut(s)	129, 774, 2203
BbvCI	CCTCAGC	2 cut(s)	102, 828
BbvI	GCAGC	4 cut(s)	562, 617, 1327, 2333
BciT130I	CCWGG	4 cut(s)	137, 491, 1278, 1327
BciVI	GTATCC	3 cut(s)	438, 1602, 1763
BclI	TGATCA	3 cut(s)	1144, 1906, 2008
BcnI	CCSGG	1 cut(s)	1690
BcoDI	GTCTC	9 cut(s)	536, 1011, 1314, 1335, 1702, 1773, 2029, 2065, 2206
BcuI	ACTAGT	1 cut(s)	482
BfmI	CTRYAG	3 cut(s)	46, 130, 2100
BfoI	RGCGCY	1 cut(s)	1816
BfrI	CTTAAG	2 cut(s)	158, 1583
BfuI	GTATCC	3 cut(s)	438, 1602, 1763
BglII	AGATCT	2 cut(s)	398, 2249
BisI	GCNGC	4 cut(s)	576, 631, 1341, 2322
BlnI	CCTAGG	1 cut(s)	1430
BlsI	GCNGC	4 cut(s)	577, 632, 1342, 2323
BmcAI	AGTACT	2 cut(s)	472, 752
Bme1390I	CCNGG	5 cut(s)	137, 491, 1278, 1327, 1690
Bme18I	GGWCC	3 cut(s)	151, 995, 1927
BmgT120I	GGNCC	4 cut(s)	151, 644, 995, 1927
BmiI	GGNNCC	3 cut(s)	997, 1687, 1928
BmrFI	CCNGG	5 cut(s)	137, 491, 1278, 1327, 1690
BmsI	GCATC	8 cut(s)	64, 154, 196, 273, 665, 725, 1846, 2384
BmtI	GCTAGC	1 cut(s)	2375
BplI	GAGNNNNNCTC	2 cut(s)	2081, 2113
BpmI	CTGGAG	1 cut(s)	933
Bpu10I	CCTNAGC	3 cut(s)	102, 773, 828
BpuEI	CTTGAG	4 cut(s)	370, 415, 739, 1759
BpuMI	CCSGG	1 cut(s)	1690
BsaBI	GATNNNNATC	1 cut(s)	2013
BsaHI	GRCGYC	1 cut(s)	2215
BsaI	GGTCTC	1 cut(s)	1335
BsaJI	CCNNGG	4 cut(s)	1277, 1430, 1743, 2391
BsaXI	ACNNNNNCTCC	2 cut(s)	881, 911
Bsc4I	CCNNNNNNNGG	5 cut(s)	160, 328, 598, 992, 1547
Bse1I	ACTGG	2 cut(s)	748, 1717
Bse21I	CCTNAGG	1 cut(s)	2219
Bse3DI	GCAATG	5 cut(s)	127, 245, 570, 640, 1560
Bse8I	GATNNNNATC	1 cut(s)	2013
BseBI	CCWGG	4 cut(s)	137, 491, 1278, 1327
BseDI	CCNNGG	4 cut(s)	1277, 1430, 1743, 2391
BseGI	GGATG	9 cut(s)	169, 719, 1167, 1447, 1451, 1644, 1753, 1918, 2439
BseJI	GATNNNNATC	1 cut(s)	2013
BseLI	CCNNNNNNNGG	5 cut(s)	160, 328, 598, 992, 1547
BseMI	GCAATG	5 cut(s)	127, 245, 570, 640, 1560
BseMII	CTCAG	7 cut(s)	93, 204, 787, 819, 2040, 2126, 2210
BseNI	ACTGG	2 cut(s)	748, 1717
BseRI	GAGGAG	1 cut(s)	2256
BseXI	GCAGC	4 cut(s)	562, 617, 1327, 2333
BseYI	CCCAGC	1 cut(s)	1567
BshFI	GGCC	2 cut(s)	646, 1366
BshNI	GGYRCC	1 cut(s)	1685
BsiHKAI	GWGCWC	3 cut(s)	129, 774, 2203
BsiSI	CCGG	1 cut(s)	1689
BslFI	GGGAC	3 cut(s)	981, 1584, 1940
BslI	CCNNNNNNNGG	5 cut(s)	160, 328, 598, 992, 1547
BsmAI	GTCTC	9 cut(s)	536, 1011, 1314, 1335, 1702, 1773, 2029, 2065, 2206
BsmBI	CGTCTC	2 cut(s)	1773, 2206
BsmFI	GGGAC	3 cut(s)	981, 1584, 1940
BsnI	GGCC	2 cut(s)	646, 1366
Bso31I	GGTCTC	1 cut(s)	1335
Bsp1286I	GDGCHC	3 cut(s)	129, 774, 2203
Bsp1407I	TGTACA	1 cut(s)	1267
BspACI	CCGC	3 cut(s)	224, 442, 2188
BspANI	GGCC	2 cut(s)	646, 1366
BspCNI	CTCAG	7 cut(s)	94, 205, 786, 820, 2039, 2125, 2211
BspLI	GGNNCC	3 cut(s)	997, 1687, 1928
BspMAI	CTGCAG	1 cut(s)	50
BspOI	GCTAGC	1 cut(s)	2375
BspPI	GGATC	4 cut(s)	363, 1360, 2121, 2282
BspT107I	GGYRCC	1 cut(s)	1685
BspTI	CTTAAG	2 cut(s)	158, 1583
BspTNI	GGTCTC	1 cut(s)	1335
BsrDI	GCAATG	5 cut(s)	127, 245, 570, 640, 1560
BsrGI	TGTACA	1 cut(s)	1267
BsrI	ACTGG	2 cut(s)	748, 1717
BssECI	CCNNGG	4 cut(s)	1277, 1430, 1743, 2391
BssNI	GRCGYC	1 cut(s)	2215
BssT1I	CCWWGG	2 cut(s)	1430, 2391
Bst2UI	CCWGG	4 cut(s)	137, 491, 1278, 1327
Bst4CI	ACNGT	1 cut(s)	59
Bst6I	CTCTTC	4 cut(s)	21, 759, 1969, 2140
BstACI	GRCGYC	1 cut(s)	2215
BstAFI	CTTAAG	2 cut(s)	158, 1583
BstAUI	TGTACA	1 cut(s)	1267
BstC8I	GCNNGC	5 cut(s)	288, 512, 2373, 2415, 2419
BstDSI	CCRYGG	1 cut(s)	1743
BstF5I	GGATG	9 cut(s)	169, 719, 1167, 1447, 1451, 1644, 1753, 1918, 2439
BstH2I	RGCGCY	1 cut(s)	1816
BstHHI	GCGC	3 cut(s)	274, 580, 1815
BstMAI	GTCTC	9 cut(s)	536, 1011, 1314, 1335, 1702, 1773, 2029, 2065, 2206
BstMWI	GCNNNNNNNGC	1 cut(s)	1843
BstNI	CCWGG	4 cut(s)	137, 491, 1278, 1327
BstNSI	RCATGY	5 cut(s)	254, 381, 514, 1190, 2183
BstSCI	CCNGG	5 cut(s)	135, 489, 1276, 1325, 1688
BstSFI	CTRYAG	3 cut(s)	46, 130, 2100
BstV1I	GCAGC	4 cut(s)	562, 617, 1327, 2333
BstX2I	RGATCY	4 cut(s)	355, 398, 1352, 2249
BstXI	CCANNNNNNTGG	2 cut(s)	1517, 2434
BstYI	RGATCY	4 cut(s)	355, 398, 1352, 2249
Bsu36I	CCTNAGG	1 cut(s)	2219
BsuI	GTATCC	3 cut(s)	438, 1602, 1763
BsuRI	GGCC	2 cut(s)	646, 1366
BtgI	CCRYGG	1 cut(s)	1743
BtsCI	GGATG	9 cut(s)	169, 719, 1167, 1447, 1451, 1644, 1753, 1918, 2439
BtsIMutI	CAGTG	3 cut(s)	55, 1032, 2167
Cac8I	GCNNGC	5 cut(s)	288, 512, 2373, 2415, 2419
CfoI	GCGC	3 cut(s)	274, 580, 1815
Cfr13I	GGNCC	4 cut(s)	151, 644, 995, 1927
CseI	GACGC	2 cut(s)	2223, 2321
CsiI	ACCWGGT	1 cut(s)	1325
Csp6I	GTAC	7 cut(s)	34, 471, 751, 1084, 1190, 1268, 1639
CviQI	GTAC	7 cut(s)	34, 471, 751, 1084, 1190, 1268, 1639
DraI	TTTAAA	2 cut(s)	390, 555
EaeI	YGGCCR	1 cut(s)	1364
Eam1104I	CTCTTC	4 cut(s)	21, 759, 1969, 2140
EarI	CTCTTC	4 cut(s)	21, 759, 1969, 2140
Ecl136II	GAGCTC	1 cut(s)	127
Eco130I	CCWWGG	2 cut(s)	1430, 2391
Eco24I	GRGCYC	1 cut(s)	129
Eco31I	GGTCTC	1 cut(s)	1335
Eco47I	GGWCC	3 cut(s)	151, 995, 1927
Eco47III	AGCGCT	1 cut(s)	1814
Eco53kI	GAGCTC	1 cut(s)	127
Eco81I	CCTNAGG	1 cut(s)	2219
EcoICRI	GAGCTC	1 cut(s)	127
EcoO109I	RGGNCCY	1 cut(s)	1927
EcoRI	GAATTC	2 cut(s)	170, 2300
EcoRII	CCWGG	4 cut(s)	135, 489, 1276, 1325
EcoT14I	CCWWGG	2 cut(s)	1430, 2391
EcoT22I	ATGCAT	1 cut(s)	1839
EcoT38I	GRGCYC	1 cut(s)	129
ErhI	CCWWGG	2 cut(s)	1430, 2391
Esp3I	CGTCTC	2 cut(s)	1773, 2206
FalI	AAGNNNNNCTT	4 cut(s)	332, 364, 2384, 2416
FaqI	GGGAC	3 cut(s)	981, 1584, 1940
FauNDI	CATATG	3 cut(s)	1653, 2192, 2328
FbaI	TGATCA	3 cut(s)	1144, 1906, 2008
Fnu4HI	GCNGC	4 cut(s)	576, 631, 1341, 2322
FokI	GGATG	8 cut(s)	176, 706, 1174, 1434, 1438, 1631, 1760, 1925
FriOI	GRGCYC	1 cut(s)	129
Fsp4HI	GCNGC	4 cut(s)	576, 631, 1341, 2322
GlaI	GCGC	3 cut(s)	273, 579, 1814
GluI	GCNGC	4 cut(s)	576, 631, 1341, 2322
GsaI	CCCAGC	1 cut(s)	1571
GsuI	CTGGAG	1 cut(s)	933
HaeII	RGCGCY	1 cut(s)	1816
HaeIII	GGCC	2 cut(s)	646, 1366
HapII	CCGG	1 cut(s)	1689
HgaI	GACGC	2 cut(s)	2223, 2321
HhaI	GCGC	3 cut(s)	274, 580, 1815
Hin1I	GRCGYC	1 cut(s)	2215
Hin6I	GCGC	3 cut(s)	272, 578, 1813
HinP1I	GCGC	3 cut(s)	272, 578, 1813
HincII	GTYRAC	3 cut(s)	229, 1507, 1722
HindII	GTYRAC	3 cut(s)	229, 1507, 1722
HindIII	AAGCTT	1 cut(s)	302
HinfI	GANTC	6 cut(s)	242, 833, 947, 967, 1294, 1572
HpaII	CCGG	1 cut(s)	1689
HphI	GGTGA	4 cut(s)	57, 1421, 1502, 2297
Hpy166II	GTNNAC	4 cut(s)	229, 1507, 1722, 1827
Hpy188I	TCNGA	8 cut(s)	214, 414, 838, 966, 1618, 2115, 2297, 2350
Hpy8I	GTNNAC	4 cut(s)	229, 1507, 1722, 1827
HpyAV	CCTTC	2 cut(s)	603, 1009
HpyCH4III	ACNGT	1 cut(s)	59
HpyCH4IV	ACGT	1 cut(s)	1782
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1843
HpySE526I	ACGT	1 cut(s)	1782
Hsp92I	GRCGYC	1 cut(s)	2215
HspAI	GCGC	3 cut(s)	272, 578, 1813
Ksp22I	TGATCA	3 cut(s)	1144, 1906, 2008
LmnI	GCTCC	3 cut(s)	889, 1550, 1843
Lsp1109I	GCAGC	4 cut(s)	562, 617, 1327, 2333
LweI	GCATC	8 cut(s)	64, 154, 196, 273, 665, 725, 1846, 2384
MabI	ACCWGGT	1 cut(s)	1325
MaeII	ACGT	1 cut(s)	1782
MaeIII	GTNAC	2 cut(s)	672, 1230
MboII	GAAGA	8 cut(s)	38, 393, 776, 1890, 1956, 2009, 2157, 2259
MflI	RGATCY	4 cut(s)	355, 398, 1352, 2249
MhlI	GDGCHC	3 cut(s)	129, 774, 2203
MlsI	TGGCCA	1 cut(s)	1366
MluNI	TGGCCA	1 cut(s)	1366
MlyI	GAGTC	1 cut(s)	1566
Mox20I	TGGCCA	1 cut(s)	1366
Mph1103I	ATGCAT	1 cut(s)	1839
MscI	TGGCCA	1 cut(s)	1366
MslI	CAYNNNNRTG	3 cut(s)	1515, 1851, 2403
Msp20I	TGGCCA	1 cut(s)	1366
MspA1I	CMGCKG	1 cut(s)	2030
MspCI	CTTAAG	2 cut(s)	158, 1583
MspI	CCGG	1 cut(s)	1689
MspR9I	CCNGG	5 cut(s)	137, 491, 1278, 1327, 1690
MvaI	CCWGG	4 cut(s)	137, 491, 1278, 1327
MwoI	GCNNNNNNNGC	1 cut(s)	1843
NciI	CCSGG	1 cut(s)	1690
NdeI	CATATG	3 cut(s)	1653, 2192, 2328
NheI	GCTAGC	1 cut(s)	2371
NlaIV	GGNNCC	3 cut(s)	997, 1687, 1928
NmuCI	GTSAC	1 cut(s)	672
NsiI	ATGCAT	1 cut(s)	1839
NspI	RCATGY	5 cut(s)	254, 381, 514, 1190, 2183
PaeI	GCATGC	1 cut(s)	514
PciI	ACATGT	1 cut(s)	2179
PfeI	GAWTC	5 cut(s)	242, 833, 947, 967, 1294
PflMI	CCANNNNNTGG	1 cut(s)	328
PfoI	TCCNGGA	1 cut(s)	489
PkrI	GCNGC	4 cut(s)	577, 632, 1342, 2323
PleI	GAGTC	1 cut(s)	1566
PpsI	GAGTC	1 cut(s)	1566
PpuMI	RGGWCCY	1 cut(s)	1927
PscI	ACATGT	1 cut(s)	2179
PshBI	ATTAAT	3 cut(s)	39, 726, 1851
PsiI	TTATAA	1 cut(s)	806
Psp124BI	GAGCTC	1 cut(s)	129
Psp5II	RGGWCCY	1 cut(s)	1927
Psp6I	CCWGG	4 cut(s)	135, 489, 1276, 1325
PspFI	CCCAGC	1 cut(s)	1567
PspGI	CCWGG	4 cut(s)	135, 489, 1276, 1325
PspN4I	GGNNCC	3 cut(s)	997, 1687, 1928
PspPI	GGNCC	4 cut(s)	151, 644, 995, 1927
PspPPI	RGGWCCY	1 cut(s)	1927
PstI	CTGCAG	1 cut(s)	50
PsuI	RGATCY	4 cut(s)	355, 398, 1352, 2249
PvuII	CAGCTG	1 cut(s)	2030
RsaI	GTAC	7 cut(s)	35, 472, 752, 1085, 1191, 1269, 1640
RsaNI	GTAC	7 cut(s)	34, 471, 751, 1084, 1190, 1268, 1639
RseI	CAYNNNNRTG	3 cut(s)	1515, 1851, 2403
SacI	GAGCTC	1 cut(s)	129
SatI	GCNGC	4 cut(s)	576, 631, 1341, 2322
Sau96I	GGNCC	4 cut(s)	151, 644, 995, 1927
SbfI	CCTGCAGG	1 cut(s)	50
ScaI	AGTACT	2 cut(s)	472, 752
SchI	GAGTC	1 cut(s)	1566
ScrFI	CCNGG	5 cut(s)	137, 491, 1278, 1327, 1690
SdaI	CCTGCAGG	1 cut(s)	50
SduI	GDGCHC	3 cut(s)	129, 774, 2203
SexAI	ACCWGGT	1 cut(s)	1325
SfaNI	GCATC	8 cut(s)	64, 154, 196, 273, 665, 725, 1846, 2384
SfcI	CTRYAG	3 cut(s)	46, 130, 2100
SinI	GGWCC	3 cut(s)	151, 995, 1927
SmiMI	CAYNNNNRTG	3 cut(s)	1515, 1851, 2403
SmlI	CTYRAG	6 cut(s)	158, 349, 394, 754, 1583, 1774
SmoI	CTYRAG	6 cut(s)	158, 349, 394, 754, 1583, 1774
SpeI	ACTAGT	1 cut(s)	482
SphI	GCATGC	1 cut(s)	514
Sse8387I	CCTGCAGG	1 cut(s)	50
SsiI	CCGC	3 cut(s)	224, 442, 2188
SspI	AATATT	3 cut(s)	730, 1073, 1178
SstI	GAGCTC	1 cut(s)	129
StyD4I	CCNGG	5 cut(s)	135, 489, 1276, 1325, 1688
StyI	CCWWGG	2 cut(s)	1430, 2391
TaaI	ACNGT	1 cut(s)	59
TaiI	ACGT	1 cut(s)	1785
TaqI	TCGA	5 cut(s)	9, 307, 1292, 2125, 2342
TatI	WGTACW	4 cut(s)	470, 750, 1083, 1267
TfiI	GAWTC	5 cut(s)	242, 833, 947, 967, 1294
TscAI	CASTG	3 cut(s)	62, 1032, 2167
TseFI	GTSAC	1 cut(s)	672
TseI	GCWGC	4 cut(s)	575, 630, 1340, 2321
Tsp45I	GTSAC	1 cut(s)	672
TspDTI	ATGAA	8 cut(s)	135, 255, 831, 1571, 1721, 1890, 2153, 2190
TspGWI	ACGGA	1 cut(s)	1760
TspRI	CASTG	3 cut(s)	62, 1032, 2167
Van91I	CCANNNNNTGG	1 cut(s)	328
Vha464I	CTTAAG	2 cut(s)	158, 1583
VpaK11BI	GGWCC	3 cut(s)	151, 995, 1927
VspI	ATTAAT	3 cut(s)	39, 726, 1851
XapI	RAATTY	5 cut(s)	170, 549, 1113, 2083, 2300
XbaI	TCTAGA	1 cut(s)	2378
XceI	RCATGY	5 cut(s)	254, 381, 514, 1190, 2183
XmaJI	CCTAGG	1 cut(s)	1430
ZrmI	AGTACT	2 cut(s)	472, 752
Zsp2I	ATGCAT	1 cut(s)	1839

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.