Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0006583

Physical Location & Seq

Genomic Coordinates Forward (+)

8483934 .. 8486231

Gene Structure 2298 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0063400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGCGAACCGAGCCGTCCAAGAGATAATCGAGCAGCAAGTGCTGACGGTGGCGAAGGCGGTGGAGGACAAGCTTGACGAGGAGATCGCAGCCCTAGATCGGGTCGACGACGACGATCTGGAGGTGCTCAGAGAGCGGAGGCTCCAGCAGATGAAGAAGATGGCCGAGAAGCGCAGCCGTTGGATCTCCCTTGGCCACGGCGACTACACCGAGATCCCTTCCGAGAAGGACTTCTTCTCAGCCGTCAAGGCCAGTGACCGCGTCGTCTGCCACTTTTACCGCGAAAATTGGCCCTGCAAGGTTGTGGACAAGCACTTGAGCATATTGGCAAAGCAACACATAGAGACACGTTTTATGAAGATCAATGCTGAGAAAAGTCCATTCTTAGCGGAGAAGCTCAAGATTGTTGTTCTTCCAACCCTTGCCCTTATTAAGAATGCCAAAGTGGATGATTATGTGGTTGGATTTGATGAGCTGGGTGGGAAAGACGACTTCAGCACAGAAGAACTAGAGGAGAGGTTGGCTAGAGCTCAAGTCATATTTTTTGAAGGTGAAGCATCTTTAAAGTCCAGTGCGAAAACCAGCAGGAGTGTCCGGCAAAGCAGCAAGGATGACTCATCAGATTCAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005375 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006810 GO:0006811 GO:0006812 GO:0006825 GO:0008150 GO:0008152 GO:0008324 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009767 GO:0009941 GO:0009987 GO:0015075 GO:0015318 GO:0015979 GO:0016530 GO:0016531 GO:0019684 GO:0022857 GO:0022890 GO:0022900 GO:0030001 GO:0031967 GO:0031975 GO:0034220 GO:0035434 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046873 GO:0046914 GO:0046915 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055070 GO:0055076 GO:0055080 GO:0055085 GO:0055114 GO:0065007 GO:0065008 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0140104

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

E1-E2_ATPase HMA Hydrolase

Protein Analysis

210

Amino Acids

23.99

Weight (kDa)

5.33

Isoelectric Point (pI)

55.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Phosducin	PF02114	34 - 177	7e-06	Phosducin
Thioredoxin	PF00085	74 - 155	6e-08	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006583)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33520 AT4G33520
fragaria_vesca	FvH4_2g11930 FvH4_2g11930 FvH4_2g11930 FvH4_2g11930 FvH4_2g11930 FvH4_2g11930 FvH4_2g11930 FvH4_2g11930 FvH4_2g11930
malus_domestica	MD05G1044900.v1.1
prunus_persica	Prupe.8G060400_v2.0.a1
pyrus_communis	pycom05g03740
rosa_chinensis	RchiOBHm_Chr6g0271821
rosa_laevigata	RLG00000013712
rosa_multiflora	Rmu_sc0002396.1_g000018
rosa_roxburghii	Rroxscaffold_173G00435020 Rroxscaffold_7G00196710
rosa_rugosa	Rorug06G0063300 Rorug06G0063400
rosa_samantha	Rh6AG181500 Rh6BG186000 Rh6CG182200 Rh6DG173300
rosa_wichuraiana	Rw6G015660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	263
AccBSI	CCGCTC	1 cut(s)	136
AccI	GTMKAC	1 cut(s)	105
AccII	CGCG	2 cut(s)	261, 282
AciI	CCGC	5 cut(s)	59, 136, 259, 280, 389
AclWI	GGATC	2 cut(s)	191, 208
AcoI	YGGCCR	2 cut(s)	162, 193
AcuI	CTGAAG	1 cut(s)	478
AfiI	CCNNNNNNNGG	2 cut(s)	99, 100
AflIII	ACRYGT	1 cut(s)	347
AgsI	TTSAA	1 cut(s)	548
AluBI	AGCT	4 cut(s)	73, 397, 475, 530
AluI	AGCT	4 cut(s)	73, 397, 475, 530
Alw21I	GWGCWC	2 cut(s)	129, 532
Alw26I	GTCTC	1 cut(s)	338
AlwI	GGATC	2 cut(s)	191, 208
AoxI	GGCC	4 cut(s)	162, 193, 249, 290
ApeKI	GCWGC	4 cut(s)	34, 89, 174, 603
Asp700I	GAANNNNTTC	1 cut(s)	230
AspLEI	GCGC	1 cut(s)	174
AspS9I	GGNCC	1 cut(s)	291
AsuHPI	GGTGA	1 cut(s)	563
BalI	TGGCCA	1 cut(s)	195
BanII	GRGCYC	1 cut(s)	532
Bbv12I	GWGCWC	2 cut(s)	129, 532
BbvI	GCAGC	4 cut(s)	46, 101, 186, 615
BccI	CCATC	1 cut(s)	154
BceAI	ACGGC	3 cut(s)	162, 214, 227
BcoDI	GTCTC	1 cut(s)	338
BfaI	CTAG	3 cut(s)	95, 509, 525
BglI	GCCNNNNNGGC	1 cut(s)	248
BisI	GCNGC	4 cut(s)	35, 90, 175, 604
BlsI	GCNGC	4 cut(s)	36, 91, 176, 605
BmgT120I	GGNCC	1 cut(s)	291
BmiI	GGNNCC	1 cut(s)	143
BmsI	GCATC	1 cut(s)	566
BpmI	CTGGAG	2 cut(s)	128, 140
BpuEI	CTTGAG	3 cut(s)	337, 383, 516
BsaJI	CCNNGG	2 cut(s)	190, 196
Bsc4I	CCNNNNNNNGG	2 cut(s)	99, 100
Bse1I	ACTGG	2 cut(s)	252, 570
BseDI	CCNNGG	2 cut(s)	190, 196
BseGI	GGATG	2 cut(s)	454, 616
BseLI	CCNNNNNNNGG	2 cut(s)	99, 100
BseMII	CTCAG	3 cut(s)	142, 252, 360
BseNI	ACTGG	2 cut(s)	252, 570
BseRI	GAGGAG	2 cut(s)	95, 527
BseXI	GCAGC	4 cut(s)	46, 101, 186, 615
BseYI	CCCAGC	1 cut(s)	475
Bsh1236I	CGCG	2 cut(s)	261, 282
BshFI	GGCC	4 cut(s)	164, 195, 251, 292
BsiHKAI	GWGCWC	2 cut(s)	129, 532
BsiSI	CCGG	1 cut(s)	595
BslI	CCNNNNNNNGG	2 cut(s)	99, 100
BsmAI	GTCTC	1 cut(s)	338
BsmI	GAATGC	1 cut(s)	442
BsnI	GGCC	4 cut(s)	164, 195, 251, 292
Bsp1286I	GDGCHC	2 cut(s)	129, 532
Bsp143I	GATC	6 cut(s)	84, 97, 115, 183, 213, 360
BspACI	CCGC	5 cut(s)	59, 136, 259, 280, 389
BspANI	GGCC	4 cut(s)	164, 195, 251, 292
BspCNI	CTCAG	3 cut(s)	141, 251, 361
BspFNI	CGCG	2 cut(s)	261, 282
BspLI	GGNNCC	1 cut(s)	143
BspPI	GGATC	2 cut(s)	191, 208
BsrBI	CCGCTC	1 cut(s)	136
BsrI	ACTGG	2 cut(s)	252, 570
BssECI	CCNNGG	2 cut(s)	190, 196
BssMI	GATC	6 cut(s)	84, 97, 115, 183, 213, 360
BssT1I	CCWWGG	1 cut(s)	190
Bst4CI	ACNGT	1 cut(s)	49
BstAPI	GCANNNNNTGC	1 cut(s)	40
BstDEI	CTNAG	4 cut(s)	128, 238, 369, 385
BstDSI	CCRYGG	1 cut(s)	196
BstF5I	GGATG	2 cut(s)	454, 616
BstFNI	CGCG	2 cut(s)	261, 282
BstHHI	GCGC	1 cut(s)	174
BstKTI	GATC	6 cut(s)	87, 100, 118, 186, 216, 363
BstMAI	GTCTC	1 cut(s)	338
BstMBI	GATC	6 cut(s)	84, 97, 115, 183, 213, 360
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 40, 133, 248, 267
BstUI	CGCG	2 cut(s)	261, 282
BstV1I	GCAGC	4 cut(s)	46, 101, 186, 615
BstX2I	RGATCY	2 cut(s)	183, 213
BstYI	RGATCY	2 cut(s)	183, 213
BsuRI	GGCC	4 cut(s)	164, 195, 251, 292
BtgI	CCRYGG	1 cut(s)	196
BtsCI	GGATG	2 cut(s)	454, 616
BtsIMutI	CAGTG	2 cut(s)	259, 577
CfoI	GCGC	1 cut(s)	174
Cfr13I	GGNCC	1 cut(s)	291
CseI	GACGC	1 cut(s)	250
DdeI	CTNAG	4 cut(s)	128, 238, 369, 385
DpnI	GATC	6 cut(s)	86, 99, 117, 185, 215, 362
DpnII	GATC	6 cut(s)	84, 97, 115, 183, 213, 360
DraI	TTTAAA	1 cut(s)	564
DrdI	GACNNNNNNGTC	1 cut(s)	263
DseDI	GACNNNNNNGTC	1 cut(s)	263
EaeI	YGGCCR	2 cut(s)	162, 193
Ecl136II	GAGCTC	1 cut(s)	530
Eco130I	CCWWGG	1 cut(s)	190
Eco24I	GRGCYC	1 cut(s)	532
Eco53kI	GAGCTC	1 cut(s)	530
Eco57I	CTGAAG	1 cut(s)	478
EcoICRI	GAGCTC	1 cut(s)	530
EcoT14I	CCWWGG	1 cut(s)	190
EcoT38I	GRGCYC	1 cut(s)	532
ErhI	CCWWGG	1 cut(s)	190
FaiI	YATR	5 cut(s)	323, 341, 356, 456, 539
FalI	AAGNNNNNCTT	2 cut(s)	218, 250
FblI	GTMKAC	1 cut(s)	105
Fnu4HI	GCNGC	4 cut(s)	35, 90, 175, 604
FokI	GGATG	2 cut(s)	461, 623
FriOI	GRGCYC	1 cut(s)	532
Fsp4HI	GCNGC	4 cut(s)	35, 90, 175, 604
FspBI	CTAG	3 cut(s)	95, 509, 525
GlaI	GCGC	1 cut(s)	173
GluI	GCNGC	4 cut(s)	35, 90, 175, 604
GsaI	CCCAGC	1 cut(s)	479
GsuI	CTGGAG	2 cut(s)	128, 140
HaeIII	GGCC	4 cut(s)	164, 195, 251, 292
HapII	CCGG	1 cut(s)	595
HgaI	GACGC	1 cut(s)	250
HhaI	GCGC	1 cut(s)	174
Hin6I	GCGC	1 cut(s)	172
HinP1I	GCGC	1 cut(s)	172
HincII	GTYRAC	1 cut(s)	106
HindII	GTYRAC	1 cut(s)	106
HindIII	AAGCTT	1 cut(s)	71
HinfI	GANTC	2 cut(s)	614, 623
HpaII	CCGG	1 cut(s)	595
HphI	GGTGA	1 cut(s)	563
Hpy166II	GTNNAC	2 cut(s)	106, 307
Hpy188I	TCNGA	4 cut(s)	131, 223, 622, 628
Hpy188III	TCNNGA	2 cut(s)	119, 400
Hpy8I	GTNNAC	2 cut(s)	106, 307
Hpy99I	CGWCG	4 cut(s)	110, 113, 116, 266
HpyAV	CCTTC	4 cut(s)	49, 220, 228, 542
HpyCH4III	ACNGT	1 cut(s)	49
HpyCH4IV	ACGT	1 cut(s)	349
HpyCH4V	TGCA	1 cut(s)	297
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 40, 133, 248, 267
HpyF3I	CTNAG	4 cut(s)	128, 238, 369, 385
HpySE526I	ACGT	1 cut(s)	349
HspAI	GCGC	1 cut(s)	172
Kzo9I	GATC	6 cut(s)	84, 97, 115, 183, 213, 360
LmnI	GCTCC	1 cut(s)	147
LpnPI	CCDG	9 cut(s)	104, 158, 265, 307, 461, 571, 583, 595, 608
Lsp1109I	GCAGC	4 cut(s)	46, 101, 186, 615
LweI	GCATC	1 cut(s)	566
MaeI	CTAG	3 cut(s)	95, 509, 525
MaeII	ACGT	1 cut(s)	349
MaeIII	GTNAC	1 cut(s)	254
MalI	GATC	6 cut(s)	86, 99, 117, 185, 215, 362
MbiI	CCGCTC	1 cut(s)	136
MboI	GATC	6 cut(s)	84, 97, 115, 183, 213, 360
MboII	GAAGA	6 cut(s)	166, 169, 226, 370, 404, 515
MflI	RGATCY	2 cut(s)	183, 213
MhlI	GDGCHC	2 cut(s)	129, 532
MlsI	TGGCCA	1 cut(s)	195
MluCI	AATT	1 cut(s)	286
MluNI	TGGCCA	1 cut(s)	195
MlyI	GAGTC	1 cut(s)	608
MmeI	TCCRAC	3 cut(s)	161, 440, 442
MnlI	CCTC	6 cut(s)	58, 73, 115, 132, 505, 510
Mox20I	TGGCCA	1 cut(s)	195
MroXI	GAANNNNTTC	1 cut(s)	230
MscI	TGGCCA	1 cut(s)	195
MseI	TTAA	2 cut(s)	432, 563
Msp20I	TGGCCA	1 cut(s)	195
MspI	CCGG	1 cut(s)	595
Mva1269I	GAATGC	1 cut(s)	442
MvnI	CGCG	2 cut(s)	261, 282
MwoI	GCNNNNNNNGC	5 cut(s)	11, 40, 133, 248, 267
NdeII	GATC	6 cut(s)	84, 97, 115, 183, 213, 360
NlaIV	GGNNCC	1 cut(s)	143
NmeAIII	GCCGAG	1 cut(s)	190
NmuCI	GTSAC	1 cut(s)	254
PcsI	WCGNNNNNNNCGW	1 cut(s)	111
PctI	GAATGC	1 cut(s)	442
PdmI	GAANNNNTTC	1 cut(s)	230
PfeI	GAWTC	1 cut(s)	623
PflFI	GACNNNGTC	1 cut(s)	260
PkrI	GCNGC	4 cut(s)	36, 91, 176, 605
PleI	GAGTC	1 cut(s)	608
PpsI	GAGTC	1 cut(s)	608
Psp124BI	GAGCTC	1 cut(s)	532
PspFI	CCCAGC	1 cut(s)	475
PspN4I	GGNNCC	1 cut(s)	143
PspPI	GGNCC	1 cut(s)	291
PsuI	RGATCY	2 cut(s)	183, 213
PsyI	GACNNNGTC	1 cut(s)	260
SacI	GAGCTC	1 cut(s)	532
SalI	GTCGAC	1 cut(s)	104
SaqAI	TTAA	2 cut(s)	432, 563
SatI	GCNGC	4 cut(s)	35, 90, 175, 604
Sau3AI	GATC	6 cut(s)	84, 97, 115, 183, 213, 360
Sau96I	GGNCC	1 cut(s)	291
SchI	GAGTC	1 cut(s)	608
SduI	GDGCHC	2 cut(s)	129, 532
SetI	ASST	9 cut(s)	75, 126, 303, 352, 399, 477, 521, 532, 553
SfaNI	GCATC	1 cut(s)	566
SmlI	CTYRAG	3 cut(s)	316, 398, 531
SmoI	CTYRAG	3 cut(s)	316, 398, 531
Sse9I	AATT	1 cut(s)	286
SsiI	CCGC	5 cut(s)	59, 136, 259, 280, 389
SspMI	CTAG	3 cut(s)	95, 509, 525
SstI	GAGCTC	1 cut(s)	532
StyI	CCWWGG	1 cut(s)	190
TaaI	ACNGT	1 cut(s)	49
TaiI	ACGT	1 cut(s)	352
TaqI	TCGA	2 cut(s)	30, 105
TasI	AATT	1 cut(s)	286
TfiI	GAWTC	1 cut(s)	623
Tru1I	TTAA	2 cut(s)	432, 563
Tru9I	TTAA	2 cut(s)	432, 563
TscAI	CASTG	2 cut(s)	259, 577
TseFI	GTSAC	1 cut(s)	254
TseI	GCWGC	4 cut(s)	34, 89, 174, 603
Tsp45I	GTSAC	1 cut(s)	254
TspDTI	ATGAA	2 cut(s)	167, 371
TspRI	CASTG	2 cut(s)	259, 577
Tth111I	GACNNNGTC	1 cut(s)	260
XmiI	GTMKAC	1 cut(s)	105
XmnI	GAANNNNTTC	1 cut(s)	230
XspI	CTAG	3 cut(s)	95, 509, 525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.