TMV resistance protein N-like
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_multiflora | Rmu_sc0003177.1_g000027 Rmu_sc0007121.1_g000030 Rmu_sc0041970.1_g000001 Rmu_ssc0000432.1_g000121 |
| rosa_roxburghii | Rroxscaffold_1G00002560 |
| rosa_samantha | Rh5BG548300 Rh5BG549500 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcoI | YGGCCR | 1 cut(s) | 336 |
| AcsI | RAATTY | 3 cut(s) | 7, 250, 377 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 150 |
| AgsI | TTSAA | 4 cut(s) | 13, 400, 422, 445 |
| AluBI | AGCT | 5 cut(s) | 41, 218, 245, 262, 433 |
| AluI | AGCT | 5 cut(s) | 41, 218, 245, 262, 433 |
| AoxI | GGCC | 1 cut(s) | 336 |
| ApeKI | GCWGC | 2 cut(s) | 433, 436 |
| ApoI | RAATTY | 3 cut(s) | 7, 250, 377 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 17 |
| AspS9I | GGNCC | 1 cut(s) | 353 |
| AvaII | GGWCC | 1 cut(s) | 353 |
| BanII | GRGCYC | 1 cut(s) | 143 |
| BbvI | GCAGC | 2 cut(s) | 420, 423 |
| BccI | CCATC | 1 cut(s) | 260 |
| BfaI | CTAG | 2 cut(s) | 66, 309 |
| BglII | AGATCT | 1 cut(s) | 158 |
| BisI | GCNGC | 2 cut(s) | 434, 437 |
| BlsI | GCNGC | 2 cut(s) | 435, 438 |
| Bme18I | GGWCC | 1 cut(s) | 353 |
| BmgT120I | GGNCC | 1 cut(s) | 353 |
| BpuEI | CTTGAG | 1 cut(s) | 271 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 150 |
| Bse118I | RCCGGY | 1 cut(s) | 338 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 150 |
| BseMII | CTCAG | 3 cut(s) | 237, 380, 383 |
| BseRI | GAGGAG | 1 cut(s) | 98 |
| BseXI | GCAGC | 2 cut(s) | 420, 423 |
| BshFI | GGCC | 1 cut(s) | 338 |
| BsiSI | CCGG | 1 cut(s) | 339 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 150 |
| BsnI | GGCC | 1 cut(s) | 338 |
| Bsp1286I | GDGCHC | 1 cut(s) | 143 |
| Bsp143I | GATC | 1 cut(s) | 158 |
| BspANI | GGCC | 1 cut(s) | 338 |
| BspCNI | CTCAG | 3 cut(s) | 238, 381, 382 |
| BspHI | TCATGA | 1 cut(s) | 271 |
| BsrFI | RCCGGY | 1 cut(s) | 338 |
| BssAI | RCCGGY | 1 cut(s) | 338 |
| BssMI | GATC | 1 cut(s) | 158 |
| Bst4CI | ACNGT | 2 cut(s) | 226, 350 |
| BstC8I | GCNNGC | 1 cut(s) | 340 |
| BstDEI | CTNAG | 6 cut(s) | 79, 155, 162, 246, 369, 389 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 148 |
| BstKTI | GATC | 1 cut(s) | 161 |
| BstMBI | GATC | 1 cut(s) | 158 |
| BstV1I | GCAGC | 2 cut(s) | 420, 423 |
| BstX2I | RGATCY | 1 cut(s) | 158 |
| BstYI | RGATCY | 1 cut(s) | 158 |
| BsuRI | GGCC | 1 cut(s) | 338 |
| BtsIMutI | CAGTG | 1 cut(s) | 355 |
| Cac8I | GCNNGC | 1 cut(s) | 340 |
| CciI | TCATGA | 1 cut(s) | 271 |
| Cfr10I | RCCGGY | 1 cut(s) | 338 |
| Cfr13I | GGNCC | 1 cut(s) | 353 |
| CviAII | CATG | 1 cut(s) | 272 |
| CviJI | RGCY | 9 cut(s) | 41, 141, 154, 218, 245, 262, 285, 338, 433 |
| CviKI_1 | RGCY | 9 cut(s) | 41, 141, 154, 218, 245, 262, 285, 338, 433 |
| DdeI | CTNAG | 6 cut(s) | 79, 155, 162, 246, 369, 389 |
| DpnI | GATC | 1 cut(s) | 160 |
| DpnII | GATC | 1 cut(s) | 158 |
| DraI | TTTAAA | 1 cut(s) | 112 |
| EaeI | YGGCCR | 1 cut(s) | 336 |
| Eco24I | GRGCYC | 1 cut(s) | 143 |
| Eco47I | GGWCC | 1 cut(s) | 353 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 148 |
| EcoT38I | GRGCYC | 1 cut(s) | 143 |
| FaeI | CATG | 1 cut(s) | 275 |
| FaiI | YATR | 8 cut(s) | 106, 120, 273, 278, 280, 282, 395, 457 |
| FatI | CATG | 1 cut(s) | 271 |
| Fnu4HI | GCNGC | 2 cut(s) | 434, 437 |
| FriOI | GRGCYC | 1 cut(s) | 143 |
| Fsp4HI | GCNGC | 2 cut(s) | 434, 437 |
| FspBI | CTAG | 2 cut(s) | 66, 309 |
| GluI | GCNGC | 2 cut(s) | 434, 437 |
| HaeIII | GGCC | 1 cut(s) | 338 |
| HapII | CCGG | 1 cut(s) | 339 |
| Hin1II | CATG | 1 cut(s) | 275 |
| HincII | GTYRAC | 1 cut(s) | 229 |
| HindII | GTYRAC | 1 cut(s) | 229 |
| HindIII | AAGCTT | 1 cut(s) | 260 |
| HinfI | GANTC | 2 cut(s) | 69, 175 |
| HpaI | GTTAAC | 1 cut(s) | 229 |
| HpaII | CCGG | 1 cut(s) | 339 |
| Hpy166II | GTNNAC | 2 cut(s) | 229, 353 |
| Hpy188I | TCNGA | 3 cut(s) | 58, 204, 390 |
| Hpy188III | TCNNGA | 7 cut(s) | 66, 210, 238, 272, 288, 309, 371 |
| Hpy8I | GTNNAC | 2 cut(s) | 229, 353 |
| HpyAV | CCTTC | 2 cut(s) | 199, 394 |
| HpyCH4III | ACNGT | 2 cut(s) | 226, 350 |
| HpyCH4V | TGCA | 2 cut(s) | 4, 319 |
| HpyF3I | CTNAG | 6 cut(s) | 79, 155, 162, 246, 369, 389 |
| Hsp92II | CATG | 1 cut(s) | 275 |
| KroI | GCCGGC | 1 cut(s) | 338 |
| KroNI | GCCGGC | 1 cut(s) | 340 |
| KspAI | GTTAAC | 1 cut(s) | 229 |
| Kzo9I | GATC | 1 cut(s) | 158 |
| LpnPI | CCDG | 6 cut(s) | 204, 223, 278, 352, 356, 398 |
| Lsp1109I | GCAGC | 2 cut(s) | 420, 423 |
| MaeI | CTAG | 2 cut(s) | 66, 309 |
| MalI | GATC | 1 cut(s) | 160 |
| MboI | GATC | 1 cut(s) | 158 |
| MboII | GAAGA | 1 cut(s) | 297 |
| MflI | RGATCY | 1 cut(s) | 158 |
| MhlI | GDGCHC | 1 cut(s) | 143 |
| MluCI | AATT | 7 cut(s) | 7, 123, 183, 250, 297, 332, 377 |
| MmeI | TCCRAC | 1 cut(s) | 81 |
| MnlI | CCTC | 2 cut(s) | 76, 366 |
| MroNI | GCCGGC | 1 cut(s) | 338 |
| MroXI | GAANNNNTTC | 1 cut(s) | 17 |
| MseI | TTAA | 3 cut(s) | 111, 146, 228 |
| MspI | CCGG | 1 cut(s) | 339 |
| NaeI | GCCGGC | 1 cut(s) | 340 |
| NdeII | GATC | 1 cut(s) | 158 |
| NgoMIV | GCCGGC | 1 cut(s) | 338 |
| NlaIII | CATG | 1 cut(s) | 275 |
| PagI | TCATGA | 1 cut(s) | 271 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 208 |
| PdiI | GCCGGC | 1 cut(s) | 340 |
| PdmI | GAANNNNTTC | 1 cut(s) | 17 |
| PfeI | GAWTC | 2 cut(s) | 69, 175 |
| PkrI | GCNGC | 2 cut(s) | 435, 438 |
| PspPI | GGNCC | 1 cut(s) | 353 |
| PsuI | RGATCY | 1 cut(s) | 158 |
| SaqAI | TTAA | 3 cut(s) | 111, 146, 228 |
| SatI | GCNGC | 2 cut(s) | 434, 437 |
| Sau3AI | GATC | 1 cut(s) | 158 |
| Sau96I | GGNCC | 1 cut(s) | 353 |
| SduI | GDGCHC | 1 cut(s) | 143 |
| SetI | ASST | 8 cut(s) | 43, 220, 247, 264, 297, 358, 405, 435 |
| SinI | GGWCC | 1 cut(s) | 353 |
| SmlI | CTYRAG | 1 cut(s) | 286 |
| SmoI | CTYRAG | 1 cut(s) | 286 |
| Sse9I | AATT | 7 cut(s) | 7, 123, 183, 250, 297, 332, 377 |
| SspMI | CTAG | 2 cut(s) | 66, 309 |
| TaaI | ACNGT | 2 cut(s) | 226, 350 |
| TaqI | TCGA | 1 cut(s) | 211 |
| TasI | AATT | 7 cut(s) | 7, 123, 183, 250, 297, 332, 377 |
| TfiI | GAWTC | 2 cut(s) | 69, 175 |
| Tru1I | TTAA | 3 cut(s) | 111, 146, 228 |
| Tru9I | TTAA | 3 cut(s) | 111, 146, 228 |
| TscAI | CASTG | 1 cut(s) | 355 |
| TseI | GCWGC | 2 cut(s) | 433, 436 |
| TspDTI | ATGAA | 3 cut(s) | 135, 181, 272 |
| TspRI | CASTG | 1 cut(s) | 355 |
| VpaK11BI | GGWCC | 1 cut(s) | 353 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 148 |
| XapI | RAATTY | 3 cut(s) | 7, 250, 377 |
| XbaI | TCTAGA | 2 cut(s) | 65, 308 |
| XmnI | GAANNNNTTC | 1 cut(s) | 17 |
| XspI | CTAG | 2 cut(s) | 66, 309 |