Rh5BG549500

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0020059
Physical Location & Seq
Reverse (-)
87293640 .. 87294008
369 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG549500.1

Sequence Viewer

Length: 369 bp
ATGAGAGTACTCAAAATCTACATTAATGATGTACGCATCATTGACGCATCCGAAAAGCCGGAAGACAGTAGGTCGGGATCGTTCTATGATTTAGTATGGTTGTACTATGTGCCATTCGATACTATAATAAAACGGCTGGGTGAGAGTGGGTTACCGCCGCCTTCCATGTGTCTGGTTAAGTTCGAATTTGAATATAAAACACTCGATGGTGGTGAGGACATTAACGGCTGGATTGGAAGCTGCGGGGTCCACGTAGTAATGCCAGAGGATGAAGGCCCAGTTGTAAATGGGATTGTACGTCCATCAACTTTGATAATGGGGACTAACTCCTACCCGGGGGACGATGCTGAAGATCCACCAACTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC TIR

Protein Analysis

122

Amino Acids

13.54

Weight (kDa)

4.33

Isoelectric Point (pI)

54.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020059)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003177.1_g000027 Rmu_sc0007121.1_g000030 Rmu_sc0041970.1_g000001 Rmu_ssc0000432.1_g000121
rosa_roxburghii Rroxscaffold_1G00002560
rosa_samantha Rh5BG548300 Rh5BG549500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 155, 158, 243
AclWI GGATC 2 cut(s) 85, 347
AcsI RAATTY 1 cut(s) 185
AcuI CTGAAG 1 cut(s) 369
AfaI GTAC 4 cut(s) 9, 33, 104, 297
AfiI CCNNNNNNNGG 1 cut(s) 336
AgsI TTSAA 1 cut(s) 191
AhdI GACNNNNNGTC 1 cut(s) 70
AluBI AGCT 1 cut(s) 240
AluI AGCT 1 cut(s) 240
AlwI GGATC 2 cut(s) 85, 347
Ama87I CYCGRG 1 cut(s) 334
AoxI GGCC 1 cut(s) 274
ApeKI GCWGC 1 cut(s) 240
ApoI RAATTY 1 cut(s) 185
AseI ATTAAT 1 cut(s) 24
AspS9I GGNCC 2 cut(s) 247, 275
AsuC2I CCSGG 2 cut(s) 335, 336
AsuHPI GGTGA 2 cut(s) 152, 224
AsuII TTCGAA 1 cut(s) 183
AvaI CYCGRG 1 cut(s) 334
AvaII GGWCC 1 cut(s) 247
BbsI GAAGAC 1 cut(s) 69
BbvI GCAGC 1 cut(s) 227
BccI CCATC 2 cut(s) 200, 310
BceAI ACGGC 2 cut(s) 149, 241
BcnI CCSGG 2 cut(s) 335, 336
BisI GCNGC 2 cut(s) 158, 241
BlsI GCNGC 2 cut(s) 159, 242
BmcAI AGTACT 1 cut(s) 9
Bme1390I CCNGG 2 cut(s) 335, 336
Bme18I GGWCC 1 cut(s) 247
BmeRI GACNNNNNGTC 1 cut(s) 70
BmeT110I CYCGRG 1 cut(s) 334
BmgT120I GGNCC 2 cut(s) 247, 275
BmiI GGNNCC 1 cut(s) 248
BmrFI CCNGG 2 cut(s) 335, 336
BmrI ACTGGG 1 cut(s) 272
BmsI GCATC 3 cut(s) 45, 56, 334
BmuI ACTGGG 1 cut(s) 272
BpiI GAAGAC 1 cut(s) 69
Bpu14I TTCGAA 1 cut(s) 183
BpuMI CCSGG 2 cut(s) 335, 336
BsaAI YACGTR 1 cut(s) 253
BsaJI CCNNGG 2 cut(s) 334, 335
Bsc4I CCNNNNNNNGG 1 cut(s) 336
Bse1I ACTGG 1 cut(s) 278
BseDI CCNNGG 2 cut(s) 334, 335
BseGI GGATG 2 cut(s) 47, 274
BseLI CCNNNNNNNGG 1 cut(s) 336
BseNI ACTGG 1 cut(s) 278
BseXI GCAGC 1 cut(s) 227
BseYI CCCAGC 1 cut(s) 136
BshFI GGCC 1 cut(s) 276
BsiHKCI CYCGRG 1 cut(s) 334
BsiSI CCGG 2 cut(s) 59, 335
BslFI GGGAC 2 cut(s) 334, 353
BslI CCNNNNNNNGG 1 cut(s) 336
BsmFI GGGAC 2 cut(s) 334, 353
BsnI GGCC 1 cut(s) 276
BsoBI CYCGRG 1 cut(s) 334
Bsp119I TTCGAA 1 cut(s) 183
Bsp143I GATC 2 cut(s) 77, 352
BspACI CCGC 3 cut(s) 155, 158, 243
BspANI GGCC 1 cut(s) 276
BspLI GGNNCC 1 cut(s) 248
BspPI GGATC 2 cut(s) 85, 347
BspT104I TTCGAA 1 cut(s) 183
BsrI ACTGG 1 cut(s) 278
BssECI CCNNGG 2 cut(s) 334, 335
BssMI GATC 2 cut(s) 77, 352
Bst4CI ACNGT 2 cut(s) 68, 364
BstBAI YACGTR 1 cut(s) 253
BstBI TTCGAA 1 cut(s) 183
BstEII GGTNACC 1 cut(s) 150
BstF5I GGATG 2 cut(s) 47, 274
BstKTI GATC 2 cut(s) 80, 355
BstMBI GATC 2 cut(s) 77, 352
BstPI GGTNACC 1 cut(s) 150
BstSCI CCNGG 2 cut(s) 333, 334
BstV1I GCAGC 1 cut(s) 227
BstV2I GAAGAC 1 cut(s) 69
BstX2I RGATCY 1 cut(s) 352
BstXI CCANNNNNNTGG 1 cut(s) 172
BstYI RGATCY 1 cut(s) 352
BsuRI GGCC 1 cut(s) 276
BtsCI GGATG 2 cut(s) 47, 274
Cfr13I GGNCC 2 cut(s) 247, 275
Cfr9I CCCGGG 1 cut(s) 334
CseI GACGC 1 cut(s) 53
Csp6I GTAC 4 cut(s) 8, 32, 103, 296
CviAII CATG 1 cut(s) 166
CviJI RGCY 5 cut(s) 58, 136, 228, 240, 276
CviKI_1 RGCY 5 cut(s) 58, 136, 228, 240, 276
CviQI GTAC 4 cut(s) 8, 32, 103, 296
DpnI GATC 2 cut(s) 79, 354
DpnII GATC 2 cut(s) 77, 352
DriI GACNNNNNGTC 1 cut(s) 70
Eam1105I GACNNNNNGTC 1 cut(s) 70
Eco47I GGWCC 1 cut(s) 247
Eco57I CTGAAG 1 cut(s) 369
Eco88I CYCGRG 1 cut(s) 334
Eco91I GGTNACC 1 cut(s) 150
EcoO65I GGTNACC 1 cut(s) 150
FaeI CATG 1 cut(s) 169
FaiI YATR 6 cut(s) 87, 97, 108, 125, 167, 195
FaqI GGGAC 2 cut(s) 334, 353
FatI CATG 1 cut(s) 165
FauI CCCGC 1 cut(s) 236
Fnu4HI GCNGC 2 cut(s) 158, 241
FokI GGATG 2 cut(s) 34, 281
Fsp4HI GCNGC 2 cut(s) 158, 241
GluI GCNGC 2 cut(s) 158, 241
GsaI CCCAGC 1 cut(s) 140
HaeIII GGCC 1 cut(s) 276
HapII CCGG 2 cut(s) 59, 335
HgaI GACGC 1 cut(s) 53
Hin1II CATG 1 cut(s) 169
HpaII CCGG 2 cut(s) 59, 335
HphI GGTGA 2 cut(s) 152, 224
Hpy166II GTNNAC 1 cut(s) 250
Hpy188I TCNGA 1 cut(s) 52
Hpy188III TCNNGA 1 cut(s) 75
Hpy8I GTNNAC 1 cut(s) 250
HpyAV CCTTC 2 cut(s) 171, 266
HpyCH4III ACNGT 2 cut(s) 68, 364
HpyCH4IV ACGT 2 cut(s) 252, 298
HpySE526I ACGT 2 cut(s) 252, 298
Hsp92II CATG 1 cut(s) 169
Kzo9I GATC 2 cut(s) 77, 352
LpnPI CCDG 7 cut(s) 72, 122, 158, 214, 276, 291, 348
Lsp1109I GCAGC 1 cut(s) 227
LweI GCATC 3 cut(s) 45, 56, 334
MaeII ACGT 2 cut(s) 252, 298
MaeIII GTNAC 1 cut(s) 150
MalI GATC 2 cut(s) 79, 354
MboI GATC 2 cut(s) 77, 352
MboII GAAGA 2 cut(s) 74, 362
MflI RGATCY 1 cut(s) 352
MluCI AATT 1 cut(s) 185
MnlI CCTC 2 cut(s) 208, 259
MseI TTAA 4 cut(s) 24, 177, 222, 367
MspI CCGG 2 cut(s) 59, 335
MspR9I CCNGG 2 cut(s) 335, 336
NciI CCSGG 2 cut(s) 335, 336
NdeII GATC 2 cut(s) 77, 352
NlaIII CATG 1 cut(s) 169
NlaIV GGNNCC 1 cut(s) 248
NspV TTCGAA 1 cut(s) 183
PkrI GCNGC 2 cut(s) 159, 242
Ppu21I YACGTR 1 cut(s) 253
PshBI ATTAAT 1 cut(s) 24
PspEI GGTNACC 1 cut(s) 150
PspFI CCCAGC 1 cut(s) 136
PspN4I GGNNCC 1 cut(s) 248
PspPI GGNCC 2 cut(s) 247, 275
PsuI RGATCY 1 cut(s) 352
RsaI GTAC 4 cut(s) 9, 33, 104, 297
RsaNI GTAC 4 cut(s) 8, 32, 103, 296
SaqAI TTAA 4 cut(s) 24, 177, 222, 367
SatI GCNGC 2 cut(s) 158, 241
Sau3AI GATC 2 cut(s) 77, 352
Sau96I GGNCC 2 cut(s) 247, 275
ScaI AGTACT 1 cut(s) 9
ScrFI CCNGG 2 cut(s) 335, 336
SetI ASST 4 cut(s) 74, 242, 255, 301
SfaNI GCATC 3 cut(s) 45, 56, 334
SfuI TTCGAA 1 cut(s) 183
SinI GGWCC 1 cut(s) 247
SmaI CCCGGG 1 cut(s) 336
Sse9I AATT 1 cut(s) 185
SsiI CCGC 3 cut(s) 155, 158, 243
StyD4I CCNGG 2 cut(s) 333, 334
TaaI ACNGT 2 cut(s) 68, 364
TaiI ACGT 2 cut(s) 255, 301
TaqI TCGA 3 cut(s) 117, 183, 204
TasI AATT 1 cut(s) 185
TatI WGTACW 2 cut(s) 7, 102
TauI GCSGC 1 cut(s) 160
Tru1I TTAA 4 cut(s) 24, 177, 222, 367
Tru9I TTAA 4 cut(s) 24, 177, 222, 367
TseI GCWGC 1 cut(s) 240
TspDTI ATGAA 1 cut(s) 285
TspMI CCCGGG 1 cut(s) 334
VpaK11BI GGWCC 1 cut(s) 247
VspI ATTAAT 1 cut(s) 24
XapI RAATTY 1 cut(s) 185
XmaI CCCGGG 1 cut(s) 334
ZrmI AGTACT 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.