Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0011903

Physical Location & Seq

Genomic Coordinates Forward (+)

4468132 .. 4469342

Gene Structure 1211 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00003620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGAGAGTTCCGCGGACTCTTGAGGTCTGGAAACTGGGGACTATCAACTATCTGGAGGCACTTAAGCTGCAGGAGAAGCTGGTATCCGATAGAAAGGTTCATAAGATTCCGGATACTCTCCTGGCCCTGCAACATCCGCCGACTTATACCCTTGGCAAGCGGAGGACTGATCACAATCTGTTGATTCCTCAGTCTGATCTAAAAGGAATAGGAGCTGAACTGCACTATACGCAGAGAGGAGGAGACATTACATTTCATGGTCCGCGCCAGGCCATCTTGTATCCCATTGTTTCGCTTAGGGATATTGGGCTTGGGGCTCGGAGATATGTGGAGAAGCTTGAGTTGACTATGATTGAATTGGCGTCTCAGTATGGTGTGAAGGCTTGTCCCGGGCAAGCAGGAGAGACTGGGGTGTGGGTTGGAGAGAGAAAGATCGGTGCAATTGGCGTGCGCATTTCGTATGGAGTGACGTCTCATGGGTTGGCATTCAACATTGATCCGGACTTGAACTATTTCAAGCATATTGTGCCGTGCGGTATTGCTGATAAAGAAGTTACGTCTCTGAGAAAGGAGACGGACTTGGTGCTTCCTACAGAAGAAGTAGTTCACGACCAGTTGATTTCTTGCTTTGCAAGATTGTTTGGTTATGGTAATGTTGTGTGGAAGGATTCTGCTTCTTTATTATTGTCAGACAGTGGGGAAATCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009249 GO:0009987 GO:0010467 GO:0016740 GO:0016746 GO:0016747 GO:0018065 GO:0018193 GO:0018205 GO:0019538 GO:0033819 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051604 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00785 ko01100 map00785 map01100

Pfam Domains

Protein Families

BPL_LplA_LipB

Protein Analysis

236

Amino Acids

26.27

Weight (kDa)

8.35

Isoelectric Point (pI)

30.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LplA-B_cat	PF21948	16 - 203	2.2e-43	Lipoyl protein ligase A/B catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011903)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04640 AT1G04640
fragaria_vesca	FvH4_3g43830
malus_domestica	MD11G1020800.v1.1
prunus_persica	Prupe.6G017700_v2.0.a1
pyrus_communis	pycom03g01630
rosa_chinensis	RchiOBHm_Chr5g0079311
rosa_laevigata	RLG00000036810
rosa_multiflora	Rmu_sc0000607.1_g000005 Rmu_sc0002187.1_g000033
rosa_roxburghii	Rroxscaffold_1G00003400 Rroxscaffold_1G00003620
rosa_rugosa	Rorug05G0464300
rosa_samantha	Rh5AG515200 Rh5BG540100 Rh5CG563100 Rh5DG550500
rosa_wichuraiana	Rw0G005210 Rw5G048050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	473
Acc16I	TGCGCA	1 cut(s)	452
AccII	CGCG	2 cut(s)	13, 265
AccIII	TCCGGA	2 cut(s)	109, 499
AciI	CCGC	6 cut(s)	11, 13, 137, 160, 263, 534
AclWI	GGATC	1 cut(s)	491
AcyI	GRCGYC	2 cut(s)	362, 470
AflII	CTTAAG	1 cut(s)	62
AgsI	TTSAA	4 cut(s)	356, 490, 508, 517
AjnI	CCWGG	2 cut(s)	120, 267
AluBI	AGCT	4 cut(s)	67, 79, 215, 337
AluI	AGCT	4 cut(s)	67, 79, 215, 337
Alw26I	GTCTC	6 cut(s)	237, 369, 398, 477, 564, 566
AlwI	GGATC	1 cut(s)	491
Ama87I	CYCGRG	1 cut(s)	389
Aor13HI	TCCGGA	2 cut(s)	109, 499
AoxI	GGCC	2 cut(s)	123, 270
ApeKI	GCWGC	1 cut(s)	67
Asp700I	GAANNNNTTC	2 cut(s)	512, 603
AspLEI	GCGC	2 cut(s)	267, 453
AspS9I	GGNCC	2 cut(s)	124, 260
AsuC2I	CCSGG	2 cut(s)	390, 391
AvaI	CYCGRG	1 cut(s)	389
AvaII	GGWCC	1 cut(s)	260
BanII	GRGCYC	1 cut(s)	319
BbvI	GCAGC	1 cut(s)	54
BccI	CCATC	1 cut(s)	281
BceAI	ACGGC	1 cut(s)	514
BciT130I	CCWGG	2 cut(s)	122, 269
BciVI	GTATCC	3 cut(s)	94, 106, 291
BclI	TGATCA	1 cut(s)	169
BcnI	CCSGG	2 cut(s)	390, 391
BcoDI	GTCTC	6 cut(s)	237, 369, 398, 477, 564, 566
BfmI	CTRYAG	2 cut(s)	68, 591
BfrI	CTTAAG	1 cut(s)	62
BfuI	GTATCC	3 cut(s)	94, 106, 291
BisI	GCNGC	1 cut(s)	68
BlsI	GCNGC	1 cut(s)	69
Bme1390I	CCNGG	4 cut(s)	122, 269, 390, 391
Bme18I	GGWCC	1 cut(s)	260
BmeT110I	CYCGRG	1 cut(s)	389
BmgT120I	GGNCC	2 cut(s)	124, 260
BmrFI	CCNGG	4 cut(s)	122, 269, 390, 391
BmrI	ACTGGG	2 cut(s)	44, 417
BmuI	ACTGGG	2 cut(s)	44, 417
BpmI	CTGGAG	1 cut(s)	74
Bpu10I	CCTNAGC	1 cut(s)	296
BpuEI	CTTGAG	2 cut(s)	41, 359
BpuMI	CCSGG	2 cut(s)	390, 391
BsaBI	GATNNNNATC	1 cut(s)	174
BsaHI	GRCGYC	2 cut(s)	362, 470
BsaJI	CCNNGG	3 cut(s)	11, 151, 389
BsaWI	WCCGGW	2 cut(s)	109, 499
Bse1I	ACTGG	3 cut(s)	39, 412, 613
Bse8I	GATNNNNATC	1 cut(s)	174
BseAI	TCCGGA	2 cut(s)	109, 499
BseBI	CCWGG	2 cut(s)	122, 269
BseDI	CCNNGG	3 cut(s)	11, 151, 389
BseGI	GGATG	1 cut(s)	133
BseJI	GATNNNNATC	1 cut(s)	174
BseMII	CTCAG	3 cut(s)	203, 380, 554
BseNI	ACTGG	3 cut(s)	39, 412, 613
BseRI	GAGGAG	2 cut(s)	252, 255
BseXI	GCAGC	1 cut(s)	54
BsgI	GTGCAG	1 cut(s)	206
Bsh1236I	CGCG	2 cut(s)	13, 265
BshFI	GGCC	2 cut(s)	125, 272
BsiHKCI	CYCGRG	1 cut(s)	389
BsiSI	CCGG	3 cut(s)	110, 390, 500
BslFI	GGGAC	2 cut(s)	52, 372
BsmAI	GTCTC	6 cut(s)	237, 369, 398, 477, 564, 566
BsmBI	CGTCTC	4 cut(s)	369, 477, 564, 566
BsmFI	GGGAC	2 cut(s)	52, 372
BsmI	GAATGC	1 cut(s)	485
BsnI	GGCC	2 cut(s)	125, 272
BsoBI	CYCGRG	1 cut(s)	389
Bsp1286I	GDGCHC	1 cut(s)	319
Bsp13I	TCCGGA	2 cut(s)	109, 499
Bsp143I	GATC	4 cut(s)	169, 196, 432, 496
BspACI	CCGC	6 cut(s)	11, 13, 137, 160, 263, 534
BspANI	GGCC	2 cut(s)	125, 272
BspCNI	CTCAG	3 cut(s)	202, 379, 555
BspEI	TCCGGA	2 cut(s)	109, 499
BspFNI	CGCG	2 cut(s)	13, 265
BspMAI	CTGCAG	1 cut(s)	72
BspPI	GGATC	1 cut(s)	491
BspTI	CTTAAG	1 cut(s)	62
BsrI	ACTGG	3 cut(s)	39, 412, 613
BssECI	CCNNGG	3 cut(s)	11, 151, 389
BssMI	GATC	4 cut(s)	169, 196, 432, 496
BssNI	GRCGYC	2 cut(s)	362, 470
BssT1I	CCWWGG	1 cut(s)	151
Bst2UI	CCWGG	2 cut(s)	122, 269
Bst4CI	ACNGT	1 cut(s)	695
BstACI	GRCGYC	2 cut(s)	362, 470
BstAFI	CTTAAG	1 cut(s)	62
BstAPI	GCANNNNNTGC	1 cut(s)	526
BstC8I	GCNNGC	3 cut(s)	158, 396, 449
BstDEI	CTNAG	4 cut(s)	189, 296, 366, 563
BstDSI	CCRYGG	1 cut(s)	11
BstF5I	GGATG	1 cut(s)	133
BstFNI	CGCG	2 cut(s)	13, 265
BstHHI	GCGC	2 cut(s)	267, 453
BstKTI	GATC	4 cut(s)	172, 199, 435, 499
BstMAI	GTCTC	6 cut(s)	237, 369, 398, 477, 564, 566
BstMBI	GATC	4 cut(s)	169, 196, 432, 496
BstMWI	GCNNNNNNNGC	4 cut(s)	76, 136, 229, 526
BstNI	CCWGG	2 cut(s)	122, 269
BstSCI	CCNGG	4 cut(s)	120, 267, 388, 389
BstSFI	CTRYAG	2 cut(s)	68, 591
BstUI	CGCG	2 cut(s)	13, 265
BstV1I	GCAGC	1 cut(s)	54
BsuI	GTATCC	3 cut(s)	94, 106, 291
BsuRI	GGCC	2 cut(s)	125, 272
BtgI	CCRYGG	1 cut(s)	11
BtsCI	GGATG	1 cut(s)	133
BtsIMutI	CAGTG	1 cut(s)	700
Cac8I	GCNNGC	3 cut(s)	158, 396, 449
CfoI	GCGC	2 cut(s)	267, 453
Cfr13I	GGNCC	2 cut(s)	124, 260
Cfr42I	CCGCGG	1 cut(s)	14
Cfr9I	CCCGGG	1 cut(s)	389
CseI	GACGC	1 cut(s)	351
CviAII	CATG	2 cut(s)	257, 476
CviJI	RGCY	9 cut(s)	67, 79, 125, 215, 272, 310, 317, 337, 383
CviKI_1	RGCY	9 cut(s)	67, 79, 125, 215, 272, 310, 317, 337, 383
DdeI	CTNAG	4 cut(s)	189, 296, 366, 563
DpnI	GATC	4 cut(s)	171, 198, 434, 498
DpnII	GATC	4 cut(s)	169, 196, 432, 496
EciI	GGCGGA	1 cut(s)	126
Eco130I	CCWWGG	1 cut(s)	151
Eco24I	GRGCYC	1 cut(s)	319
Eco47I	GGWCC	1 cut(s)	260
Eco88I	CYCGRG	1 cut(s)	389
EcoRII	CCWGG	2 cut(s)	120, 267
EcoT14I	CCWWGG	1 cut(s)	151
EcoT38I	GRGCYC	1 cut(s)	319
ErhI	CCWWGG	1 cut(s)	151
Esp3I	CGTCTC	4 cut(s)	369, 477, 564, 566
FaeI	CATG	2 cut(s)	260, 479
FaqI	GGGAC	2 cut(s)	52, 372
FatI	CATG	2 cut(s)	256, 475
FbaI	TGATCA	1 cut(s)	169
Fnu4HI	GCNGC	1 cut(s)	68
FokI	GGATG	1 cut(s)	120
FriOI	GRGCYC	1 cut(s)	319
Fsp4HI	GCNGC	1 cut(s)	68
FspAI	RTGCGCAY	1 cut(s)	452
FspI	TGCGCA	1 cut(s)	452
GlaI	GCGC	2 cut(s)	266, 452
GluI	GCNGC	1 cut(s)	68
GsuI	CTGGAG	1 cut(s)	74
HaeIII	GGCC	2 cut(s)	125, 272
HapII	CCGG	3 cut(s)	110, 390, 500
HgaI	GACGC	1 cut(s)	351
HhaI	GCGC	2 cut(s)	267, 453
Hin1I	GRCGYC	2 cut(s)	362, 470
Hin1II	CATG	2 cut(s)	260, 479
Hin6I	GCGC	2 cut(s)	265, 451
HinP1I	GCGC	2 cut(s)	265, 451
HincII	GTYRAC	1 cut(s)	345
HindII	GTYRAC	1 cut(s)	345
HindIII	AAGCTT	1 cut(s)	335
HinfI	GANTC	4 cut(s)	16, 106, 184, 668
HpaII	CCGG	3 cut(s)	110, 390, 500
Hpy166II	GTNNAC	2 cut(s)	345, 607
Hpy188I	TCNGA	5 cut(s)	88, 196, 321, 564, 691
Hpy188III	TCNNGA	6 cut(s)	20, 28, 53, 110, 500, 608
Hpy8I	GTNNAC	2 cut(s)	345, 607
HpyAV	CCTTC	2 cut(s)	373, 658
HpyCH4III	ACNGT	1 cut(s)	695
HpyCH4IV	ACGT	2 cut(s)	470, 557
HpyCH4V	TGCA	5 cut(s)	70, 130, 223, 440, 632
HpyF10VI	GCNNNNNNNGC	4 cut(s)	76, 136, 229, 526
HpyF3I	CTNAG	4 cut(s)	189, 296, 366, 563
HpySE526I	ACGT	2 cut(s)	470, 557
Hsp92I	GRCGYC	2 cut(s)	362, 470
Hsp92II	CATG	2 cut(s)	260, 479
HspAI	GCGC	2 cut(s)	265, 451
Kpn2I	TCCGGA	2 cut(s)	109, 499
Ksp22I	TGATCA	1 cut(s)	169
KspI	CCGCGG	1 cut(s)	14
Kzo9I	GATC	4 cut(s)	169, 196, 432, 496
LmnI	GCTCC	1 cut(s)	212
Lsp1109I	GCAGC	1 cut(s)	54
MaeII	ACGT	2 cut(s)	470, 557
MaeIII	GTNAC	2 cut(s)	466, 553
MalI	GATC	4 cut(s)	171, 198, 434, 498
MboI	GATC	4 cut(s)	169, 196, 432, 496
MboII	GAAGA	1 cut(s)	608
MfeI	CAATTG	1 cut(s)	441
MhlI	GDGCHC	1 cut(s)	319
MluCI	AATT	2 cut(s)	356, 441
MlyI	GAGTC	1 cut(s)	10
MmeI	TCCRAC	1 cut(s)	400
MnlI	CCTC	6 cut(s)	16, 49, 156, 198, 230, 233
MroI	TCCGGA	2 cut(s)	109, 499
MroXI	GAANNNNTTC	2 cut(s)	512, 603
MseI	TTAA	1 cut(s)	63
MspA1I	CMGCKG	1 cut(s)	13
MspCI	CTTAAG	1 cut(s)	62
MspI	CCGG	3 cut(s)	110, 390, 500
MspR9I	CCNGG	4 cut(s)	122, 269, 390, 391
MunI	CAATTG	1 cut(s)	441
Mva1269I	GAATGC	1 cut(s)	485
MvaI	CCWGG	2 cut(s)	122, 269
MvnI	CGCG	2 cut(s)	13, 265
MwoI	GCNNNNNNNGC	4 cut(s)	76, 136, 229, 526
NciI	CCSGG	2 cut(s)	390, 391
NdeII	GATC	4 cut(s)	169, 196, 432, 496
NlaIII	CATG	2 cut(s)	260, 479
NmuCI	GTSAC	1 cut(s)	466
NsbI	TGCGCA	1 cut(s)	452
PctI	GAATGC	1 cut(s)	485
PdmI	GAANNNNTTC	2 cut(s)	512, 603
PfeI	GAWTC	3 cut(s)	106, 184, 668
PkrI	GCNGC	1 cut(s)	69
PleI	GAGTC	1 cut(s)	10
PpsI	GAGTC	1 cut(s)	10
Psp6I	CCWGG	2 cut(s)	120, 267
PspGI	CCWGG	2 cut(s)	120, 267
PspPI	GGNCC	2 cut(s)	124, 260
PstI	CTGCAG	1 cut(s)	72
SacII	CCGCGG	1 cut(s)	14
SaqAI	TTAA	1 cut(s)	63
SatI	GCNGC	1 cut(s)	68
Sau3AI	GATC	4 cut(s)	169, 196, 432, 496
Sau96I	GGNCC	2 cut(s)	124, 260
SchI	GAGTC	1 cut(s)	10
ScrFI	CCNGG	4 cut(s)	122, 269, 390, 391
SduI	GDGCHC	1 cut(s)	319
SetI	ASST	8 cut(s)	27, 69, 81, 99, 217, 339, 473, 560
SfcI	CTRYAG	2 cut(s)	68, 591
Sfr303I	CCGCGG	1 cut(s)	14
SgrBI	CCGCGG	1 cut(s)	14
SinI	GGWCC	1 cut(s)	260
SmaI	CCCGGG	1 cut(s)	391
SmlI	CTYRAG	3 cut(s)	20, 62, 338
SmoI	CTYRAG	3 cut(s)	20, 62, 338
Sse9I	AATT	2 cut(s)	356, 441
SsiI	CCGC	6 cut(s)	11, 13, 137, 160, 263, 534
StyD4I	CCNGG	4 cut(s)	120, 267, 388, 389
StyI	CCWWGG	1 cut(s)	151
TaaI	ACNGT	1 cut(s)	695
TaiI	ACGT	2 cut(s)	473, 560
TasI	AATT	2 cut(s)	356, 441
TfiI	GAWTC	3 cut(s)	106, 184, 668
Tru1I	TTAA	1 cut(s)	63
Tru9I	TTAA	1 cut(s)	63
TscAI	CASTG	1 cut(s)	700
TseFI	GTSAC	1 cut(s)	466
TseI	GCWGC	1 cut(s)	67
Tsp45I	GTSAC	1 cut(s)	466
TspDTI	ATGAA	2 cut(s)	89, 245
TspGWI	ACGGA	1 cut(s)	590
TspMI	CCCGGG	1 cut(s)	389
TspRI	CASTG	1 cut(s)	700
Vha464I	CTTAAG	1 cut(s)	62
VpaK11BI	GGWCC	1 cut(s)	260
XmaI	CCCGGG	1 cut(s)	389
XmnI	GAANNNNTTC	2 cut(s)	512, 603
ZraI	GACGTC	1 cut(s)	471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.