Rroxscaffold_1G00022720

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0019564
Physical Location & Seq
Forward (+)
28099106 .. 28102148
3043 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00022720.1

Sequence Viewer

Length: 321 bp
ATGATAAACCAGAGACCTGAGAAGCATATTAGAGACCGAAACCTTCGACCCAAACAACGCAGGAGCCAACGCACAAGTGAAGATGGAGATGGTGAAGAAGGAGCTGATCCTCTTCATGTTTCCGATGTGGGACTAATATGCTTCGGTCCCCGCCGAAGCTTCGATGCAATCTTGGCACGGCGTGTGTTAGCGCGTCGGCTTGGCGGTTTAGCGGCAAGCTGGGGGCGAGCGGTAGCTCTTGGCGGTGCTCCCGTAGGTCACTCCTTTGGCGGGAGTCTGCATAGTGCTGGAGGTAGCATGAGCGTGGCTCATTATAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

11.37

Weight (kDa)

11.0

Isoelectric Point (pI)

73.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 230
AccII CGCG 1 cut(s) 193
AciI CCGC 6 cut(s) 151, 204, 212, 230, 243, 270
AclWI GGATC 1 cut(s) 101
AdeI CACNNNGTG 1 cut(s) 182
AfiI CCNNNNNNNGG 1 cut(s) 270
AluBI AGCT 5 cut(s) 104, 159, 219, 236, 318
AluI AGCT 5 cut(s) 104, 159, 219, 236, 318
Alw21I GWGCWC 1 cut(s) 250
Alw26I GTCTC 2 cut(s) 7, 27
AlwI GGATC 1 cut(s) 101
AspLEI GCGC 1 cut(s) 193
AspS9I GGNCC 1 cut(s) 146
AsuHPI GGTGA 1 cut(s) 104
AvaII GGWCC 1 cut(s) 146
Bbv12I GWGCWC 1 cut(s) 250
BccI CCATC 2 cut(s) 77, 83
BceAI ACGGC 1 cut(s) 194
BcoDI GTCTC 2 cut(s) 7, 27
BisI GCNGC 1 cut(s) 213
BlsI GCNGC 1 cut(s) 214
Bme18I GGWCC 1 cut(s) 146
BmgT120I GGNCC 1 cut(s) 146
BmiI GGNNCC 2 cut(s) 65, 148
BmsI GCATC 1 cut(s) 154
BplI GAGNNNNNCTC 1 cut(s) 292
BpmI CTGGAG 1 cut(s) 309
BsaI GGTCTC 2 cut(s) 7, 27
Bsc4I CCNNNNNNNGG 1 cut(s) 270
BseLI CCNNNNNNNGG 1 cut(s) 270
BseMII CTCAG 1 cut(s) 9
BseYI CCCAGC 1 cut(s) 219
Bsh1236I CGCG 1 cut(s) 193
BsiHKAI GWGCWC 1 cut(s) 250
BslFI GGGAC 2 cut(s) 132, 144
BslI CCNNNNNNNGG 1 cut(s) 270
BsmAI GTCTC 2 cut(s) 7, 27
BsmFI GGGAC 2 cut(s) 132, 144
Bso31I GGTCTC 2 cut(s) 7, 27
Bsp1286I GDGCHC 1 cut(s) 250
Bsp143I GATC 1 cut(s) 106
BspACI CCGC 6 cut(s) 151, 204, 212, 230, 243, 270
BspCNI CTCAG 1 cut(s) 10
BspFNI CGCG 1 cut(s) 193
BspLI GGNNCC 2 cut(s) 65, 148
BspPI GGATC 1 cut(s) 101
BspTNI GGTCTC 2 cut(s) 7, 27
BsrBI CCGCTC 1 cut(s) 230
BssMI GATC 1 cut(s) 106
Bst6I CTCTTC 1 cut(s) 117
BstC8I GCNNGC 2 cut(s) 217, 228
BstDEI CTNAG 1 cut(s) 18
BstFNI CGCG 1 cut(s) 193
BstHHI GCGC 1 cut(s) 193
BstKTI GATC 1 cut(s) 109
BstMAI GTCTC 2 cut(s) 7, 27
BstMBI GATC 1 cut(s) 106
BstMWI GCNNNNNNNGC 1 cut(s) 173
BstUI CGCG 1 cut(s) 193
Cac8I GCNNGC 2 cut(s) 217, 228
CfoI GCGC 1 cut(s) 193
Cfr13I GGNCC 1 cut(s) 146
CseI GACGC 1 cut(s) 182
CviAII CATG 2 cut(s) 116, 298
CviJI RGCY 8 cut(s) 66, 104, 159, 199, 219, 236, 308, 318
CviKI_1 RGCY 8 cut(s) 66, 104, 159, 199, 219, 236, 308, 318
DdeI CTNAG 1 cut(s) 18
DpnI GATC 1 cut(s) 108
DpnII GATC 1 cut(s) 106
DraIII CACNNNGTG 1 cut(s) 182
Eam1104I CTCTTC 1 cut(s) 117
EarI CTCTTC 1 cut(s) 117
Eco31I GGTCTC 2 cut(s) 7, 27
Eco47I GGWCC 1 cut(s) 146
FaeI CATG 2 cut(s) 119, 301
FaiI YATR 6 cut(s) 27, 117, 139, 282, 299, 315
FaqI GGGAC 2 cut(s) 132, 144
FatI CATG 2 cut(s) 115, 297
FauI CCCGC 2 cut(s) 158, 263
Fnu4HI GCNGC 1 cut(s) 213
Fsp4HI GCNGC 1 cut(s) 213
GlaI GCGC 1 cut(s) 192
GluI GCNGC 1 cut(s) 213
GsaI CCCAGC 1 cut(s) 223
GsuI CTGGAG 1 cut(s) 309
HgaI GACGC 1 cut(s) 182
HhaI GCGC 1 cut(s) 193
Hin1II CATG 2 cut(s) 119, 301
Hin6I GCGC 1 cut(s) 191
HinP1I GCGC 1 cut(s) 191
HindIII AAGCTT 1 cut(s) 157
HinfI GANTC 1 cut(s) 274
HphI GGTGA 1 cut(s) 104
Hpy188I TCNGA 1 cut(s) 124
Hpy99I CGWCG 1 cut(s) 198
HpyAV CCTTC 2 cut(s) 53, 92
HpyCH4V TGCA 2 cut(s) 167, 280
HpyF10VI GCNNNNNNNGC 1 cut(s) 173
HpyF3I CTNAG 1 cut(s) 18
Hsp92II CATG 2 cut(s) 119, 301
HspAI GCGC 1 cut(s) 191
Kzo9I GATC 1 cut(s) 106
LmnI GCTCC 3 cut(s) 63, 101, 253
LpnPI CCDG 5 cut(s) 23, 30, 46, 205, 273
LweI GCATC 1 cut(s) 154
MaeIII GTNAC 1 cut(s) 257
MalI GATC 1 cut(s) 108
MbiI CCGCTC 1 cut(s) 230
MboI GATC 1 cut(s) 106
MboII GAAGA 3 cut(s) 92, 104, 107
MhlI GDGCHC 1 cut(s) 250
MlyI GAGTC 1 cut(s) 283
MnlI CCTC 2 cut(s) 120, 284
MslI CAYNNNNRTG 1 cut(s) 302
MvnI CGCG 1 cut(s) 193
MwoI GCNNNNNNNGC 1 cut(s) 173
NdeII GATC 1 cut(s) 106
NlaIII CATG 2 cut(s) 119, 301
NlaIV GGNNCC 2 cut(s) 65, 148
NmuCI GTSAC 1 cut(s) 257
PkrI GCNGC 1 cut(s) 214
PleI GAGTC 1 cut(s) 282
PpsI GAGTC 1 cut(s) 282
PspFI CCCAGC 1 cut(s) 219
PspN4I GGNNCC 2 cut(s) 65, 148
PspPI GGNCC 1 cut(s) 146
RseI CAYNNNNRTG 1 cut(s) 302
SatI GCNGC 1 cut(s) 213
Sau3AI GATC 1 cut(s) 106
Sau96I GGNCC 1 cut(s) 146
SchI GAGTC 1 cut(s) 283
SduI GDGCHC 1 cut(s) 250
SetI ASST 9 cut(s) 19, 45, 106, 161, 221, 238, 259, 295, 320
SfaNI GCATC 1 cut(s) 154
SinI GGWCC 1 cut(s) 146
SmiMI CAYNNNNRTG 1 cut(s) 302
SsiI CCGC 6 cut(s) 151, 204, 212, 230, 243, 270
TaqI TCGA 2 cut(s) 46, 162
TaqII GACCGA 2 cut(s) 51, 134
TauI GCSGC 1 cut(s) 215
TseFI GTSAC 1 cut(s) 257
Tsp45I GTSAC 1 cut(s) 257
TspDTI ATGAA 1 cut(s) 104
VpaK11BI GGWCC 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.