Rroxscaffold_3G00252640

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0019564
Physical Location & Seq
Forward (+)
46715006 .. 46728212
13207 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00252640.1

Sequence Viewer

Length: 291 bp
ATGGCATTGCGGAATGCCTTGACAGCGATGTTATGGCTAAAGGTTGTGATCATGGTTGGGTTGACGATTGGGATGGAGATAATGCGGGGAAGTCATCGGGAAGGCATCTCGGTGGGAAGCATCTCTGCTAATGGTCTAGCTGCAAGGTCTTTGAACAAAGATGGGTGGGAAAATAGCGAGATGATTAGTGAGGAAAGAGCCGAGCTTCTCCATGTTTTCGATGTAGGACCGATGTGCTTCGGTCCCCGGCCGGAGCTTCGCCGCTCCCTTGGCGAGGCGCGTCGGCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

10.65

Weight (kDa)

9.29

Isoelectric Point (pI)

54.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 264
AccII CGCG 1 cut(s) 280
AciI CCGC 4 cut(s) 10, 85, 262, 286
AcoI YGGCCR 1 cut(s) 248
AfiI CCNNNNNNNGG 1 cut(s) 274
AgsI TTSAA 1 cut(s) 154
AluBI AGCT 3 cut(s) 140, 205, 256
AluI AGCT 3 cut(s) 140, 205, 256
AoxI GGCC 1 cut(s) 248
ApeKI GCWGC 1 cut(s) 140
AspLEI GCGC 1 cut(s) 280
AspS9I GGNCC 2 cut(s) 227, 242
AsuC2I CCSGG 1 cut(s) 247
AvaII GGWCC 2 cut(s) 227, 242
BbvI GCAGC 1 cut(s) 127
BccI CCATC 2 cut(s) 67, 155
BclI TGATCA 1 cut(s) 48
BcnI CCSGG 1 cut(s) 247
BfaI CTAG 1 cut(s) 137
BisI GCNGC 2 cut(s) 141, 262
BlsI GCNGC 2 cut(s) 142, 263
Bme1390I CCNGG 1 cut(s) 247
Bme18I GGWCC 2 cut(s) 227, 242
BmgT120I GGNCC 2 cut(s) 227, 242
BmiI GGNNCC 1 cut(s) 244
BmrFI CCNGG 1 cut(s) 247
BmsI GCATC 2 cut(s) 114, 129
BpuMI CCSGG 1 cut(s) 247
BsaJI CCNNGG 2 cut(s) 245, 268
Bsc4I CCNNNNNNNGG 1 cut(s) 274
Bse3DI GCAATG 1 cut(s) 5
BseDI CCNNGG 2 cut(s) 245, 268
BseGI GGATG 1 cut(s) 78
BseLI CCNNNNNNNGG 1 cut(s) 274
BseMI GCAATG 1 cut(s) 5
BseX3I CGGCCG 1 cut(s) 248
BseXI GCAGC 1 cut(s) 127
Bsh1236I CGCG 1 cut(s) 280
Bsh1285I CGRYCG 1 cut(s) 251
BshFI GGCC 1 cut(s) 250
BsiEI CGRYCG 1 cut(s) 251
BsiSI CCGG 2 cut(s) 247, 251
BslFI GGGAC 1 cut(s) 228
BslI CCNNNNNNNGG 1 cut(s) 274
BsmFI GGGAC 1 cut(s) 228
BsmI GAATGC 1 cut(s) 19
BsnI GGCC 1 cut(s) 250
Bsp143I GATC 1 cut(s) 48
BspACI CCGC 4 cut(s) 10, 85, 262, 286
BspANI GGCC 1 cut(s) 250
BspFNI CGCG 1 cut(s) 280
BspLI GGNNCC 1 cut(s) 244
BsrBI CCGCTC 1 cut(s) 264
BsrDI GCAATG 1 cut(s) 5
BssECI CCNNGG 2 cut(s) 245, 268
BssMI GATC 1 cut(s) 48
BssT1I CCWWGG 1 cut(s) 268
BstENI CCTNNNNNAGG 1 cut(s) 272
BstF5I GGATG 1 cut(s) 78
BstFNI CGCG 1 cut(s) 280
BstHHI GCGC 1 cut(s) 280
BstKTI GATC 1 cut(s) 51
BstMBI GATC 1 cut(s) 48
BstMCI CGRYCG 1 cut(s) 251
BstMWI GCNNNNNNNGC 2 cut(s) 23, 270
BstSCI CCNGG 1 cut(s) 245
BstUI CGCG 1 cut(s) 280
BstV1I GCAGC 1 cut(s) 127
BstZI CGGCCG 1 cut(s) 248
BsuRI GGCC 1 cut(s) 250
BtgZI GCGATG 1 cut(s) 41
BtsCI GGATG 1 cut(s) 78
CfoI GCGC 1 cut(s) 280
Cfr13I GGNCC 2 cut(s) 227, 242
CseI GACGC 1 cut(s) 269
CviAII CATG 2 cut(s) 52, 212
CviJI RGCY 6 cut(s) 37, 140, 200, 205, 250, 256
CviKI_1 RGCY 6 cut(s) 37, 140, 200, 205, 250, 256
DpnI GATC 1 cut(s) 50
DpnII GATC 1 cut(s) 48
EaeI YGGCCR 1 cut(s) 248
EagI CGGCCG 1 cut(s) 248
EclXI CGGCCG 1 cut(s) 248
Eco130I CCWWGG 1 cut(s) 268
Eco47I GGWCC 2 cut(s) 227, 242
Eco52I CGGCCG 1 cut(s) 248
EcoNI CCTNNNNNAGG 1 cut(s) 272
EcoT14I CCWWGG 1 cut(s) 268
ErhI CCWWGG 1 cut(s) 268
FaeI CATG 2 cut(s) 55, 215
FaiI YATR 3 cut(s) 34, 53, 213
FaqI GGGAC 1 cut(s) 228
FatI CATG 2 cut(s) 51, 211
FauI CCCGC 1 cut(s) 78
FbaI TGATCA 1 cut(s) 48
Fnu4HI GCNGC 2 cut(s) 141, 262
FokI GGATG 1 cut(s) 85
Fsp4HI GCNGC 2 cut(s) 141, 262
FspBI CTAG 1 cut(s) 137
GlaI GCGC 1 cut(s) 279
GluI GCNGC 2 cut(s) 141, 262
HaeIII GGCC 1 cut(s) 250
HapII CCGG 2 cut(s) 247, 251
HgaI GACGC 1 cut(s) 269
HhaI GCGC 1 cut(s) 280
Hin1II CATG 2 cut(s) 55, 215
Hin6I GCGC 1 cut(s) 278
HinP1I GCGC 1 cut(s) 278
HincII GTYRAC 1 cut(s) 63
HindII GTYRAC 1 cut(s) 63
HpaII CCGG 2 cut(s) 247, 251
Hpy166II GTNNAC 1 cut(s) 63
Hpy188III TCNNGA 1 cut(s) 98
Hpy8I GTNNAC 1 cut(s) 63
Hpy99I CGWCG 1 cut(s) 285
HpyAV CCTTC 1 cut(s) 95
HpyCH4V TGCA 1 cut(s) 143
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 270
Hsp92II CATG 2 cut(s) 55, 215
HspAI GCGC 1 cut(s) 278
Ksp22I TGATCA 1 cut(s) 48
Kzo9I GATC 1 cut(s) 48
LmnI GCTCC 2 cut(s) 253, 269
LpnPI CCDG 2 cut(s) 260, 264
Lsp1109I GCAGC 1 cut(s) 127
LweI GCATC 2 cut(s) 114, 129
MaeI CTAG 1 cut(s) 137
MalI GATC 1 cut(s) 50
MbiI CCGCTC 1 cut(s) 264
MboI GATC 1 cut(s) 48
MnlI CCTC 2 cut(s) 184, 268
MslI CAYNNNNRTG 1 cut(s) 110
MspI CCGG 2 cut(s) 247, 251
MspR9I CCNGG 1 cut(s) 247
Mva1269I GAATGC 1 cut(s) 19
MvnI CGCG 1 cut(s) 280
MwoI GCNNNNNNNGC 2 cut(s) 23, 270
NciI CCSGG 1 cut(s) 247
NdeII GATC 1 cut(s) 48
NlaIII CATG 2 cut(s) 55, 215
NlaIV GGNNCC 1 cut(s) 244
NmeAIII GCCGAG 1 cut(s) 226
PctI GAATGC 1 cut(s) 19
PkrI GCNGC 2 cut(s) 142, 263
PspN4I GGNNCC 1 cut(s) 244
PspPI GGNCC 2 cut(s) 227, 242
RseI CAYNNNNRTG 1 cut(s) 110
SatI GCNGC 2 cut(s) 141, 262
Sau3AI GATC 1 cut(s) 48
Sau96I GGNCC 2 cut(s) 227, 242
ScrFI CCNGG 1 cut(s) 247
SetI ASST 5 cut(s) 45, 142, 149, 207, 258
SfaNI GCATC 2 cut(s) 114, 129
SinI GGWCC 2 cut(s) 227, 242
SmiMI CAYNNNNRTG 1 cut(s) 110
SsiI CCGC 4 cut(s) 10, 85, 262, 286
SspMI CTAG 1 cut(s) 137
StyD4I CCNGG 1 cut(s) 245
StyI CCWWGG 1 cut(s) 268
TaqI TCGA 1 cut(s) 219
TaqII GACCGA 2 cut(s) 230, 244
TauI GCSGC 1 cut(s) 264
TseI GCWGC 1 cut(s) 140
VpaK11BI GGWCC 2 cut(s) 227, 242
XagI CCTNNNNNAGG 1 cut(s) 272
XspI CTAG 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.