Rroxscaffold_7G00206160

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0019564
Physical Location & Seq
Forward (+)
55840115 .. 55852905
12791 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00206160.1

Sequence Viewer

Length: 396 bp
ATGGAGGATTTATTGCTGGATTTTTACATGCCCAGGATAATGTTTCAATTGCCAAGCATGCTGAATTACTTGCCTGTTATCCTGGGATCCAATAAGCTAGAGCTAAAGGATGACGCCATAACCATGGCTCCGCAACATGACCCAGCCCCAACTCAAAAGAGTGGGGTGAGGAGGGAGCCGATCTTCTCTATGTTTTCGATGTGGGACCGATATGCTTCGGTTCCCGGCACGGAGCTTCGATGCTATCTTGAAGCGGCGCATGGCGGAGCGTCGAGAGGTGATATGGGGGTAGCCGAGGCTCGGGCGGTAGCCTCGCTTGGATGTGTTCCCGTAGGTCACTCCTTTGGAAGGAGTTGGTACCGCGGCGGTAGCATGAGCGTGGCTCATTATAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

14.47

Weight (kDa)

6.4

Isoelectric Point (pI)

53.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 357
AccB1I GGYRCC 1 cut(s) 357
AccII CGCG 1 cut(s) 363
AciI CCGC 7 cut(s) 131, 254, 264, 305, 361, 363, 366
AclWI GGATC 2 cut(s) 81, 94
AcyI GRCGYC 1 cut(s) 114
AfaI GTAC 1 cut(s) 359
AfiI CCNNNNNNNGG 2 cut(s) 300, 348
AgsI TTSAA 2 cut(s) 47, 251
AjnI CCWGG 2 cut(s) 32, 81
AluBI AGCT 4 cut(s) 97, 103, 235, 393
AluI AGCT 4 cut(s) 97, 103, 235, 393
AlwI GGATC 2 cut(s) 81, 94
Ama87I CYCGRG 1 cut(s) 300
Asp718I GGTACC 1 cut(s) 357
AspLEI GCGC 1 cut(s) 259
AspS9I GGNCC 1 cut(s) 205
AsuC2I CCSGG 1 cut(s) 225
AsuHPI GGTGA 2 cut(s) 178, 290
AvaI CYCGRG 1 cut(s) 300
AvaII GGWCC 1 cut(s) 205
BamHI GGATCC 1 cut(s) 86
BanI GGYRCC 1 cut(s) 357
BciT130I CCWGG 2 cut(s) 34, 83
BcnI CCSGG 1 cut(s) 225
BfaI CTAG 1 cut(s) 98
BisI GCNGC 2 cut(s) 255, 364
BlsI GCNGC 2 cut(s) 256, 365
Bme1390I CCNGG 3 cut(s) 34, 83, 225
Bme18I GGWCC 1 cut(s) 205
BmeT110I CYCGRG 1 cut(s) 300
BmgT120I GGNCC 1 cut(s) 205
BmiI GGNNCC 6 cut(s) 88, 129, 177, 206, 222, 359
BmrFI CCNGG 3 cut(s) 34, 83, 225
BmsI GCATC 1 cut(s) 230
BplI GAGNNNNNCTC 1 cut(s) 367
BpuMI CCSGG 1 cut(s) 225
BsaHI GRCGYC 1 cut(s) 114
BsaJI CCNNGG 5 cut(s) 32, 82, 123, 294, 361
BsaXI ACNNNNNCTCC 2 cut(s) 112, 142
Bsc4I CCNNNNNNNGG 2 cut(s) 300, 348
BseBI CCWGG 2 cut(s) 34, 83
BseDI CCNNGG 5 cut(s) 32, 82, 123, 294, 361
BseGI GGATG 2 cut(s) 115, 326
BseLI CCNNNNNNNGG 2 cut(s) 300, 348
BseRI GAGGAG 1 cut(s) 184
BseYI CCCAGC 1 cut(s) 142
Bsh1236I CGCG 1 cut(s) 363
BshNI GGYRCC 1 cut(s) 357
BsiHKCI CYCGRG 1 cut(s) 300
BsiSI CCGG 1 cut(s) 225
BslFI GGGAC 1 cut(s) 218
BslI CCNNNNNNNGG 2 cut(s) 300, 348
BsmFI GGGAC 1 cut(s) 218
BsoBI CYCGRG 1 cut(s) 300
Bsp143I GATC 2 cut(s) 86, 180
Bsp19I CCATGG 1 cut(s) 123
BspACI CCGC 7 cut(s) 131, 254, 264, 305, 361, 363, 366
BspFNI CGCG 1 cut(s) 363
BspLI GGNNCC 6 cut(s) 88, 129, 177, 206, 222, 359
BspPI GGATC 2 cut(s) 81, 94
BspT107I GGYRCC 1 cut(s) 357
BssECI CCNNGG 5 cut(s) 32, 82, 123, 294, 361
BssMI GATC 2 cut(s) 86, 180
BssNI GRCGYC 1 cut(s) 114
BssT1I CCWWGG 1 cut(s) 123
Bst2UI CCWGG 2 cut(s) 34, 83
BstACI GRCGYC 1 cut(s) 114
BstC8I GCNNGC 1 cut(s) 59
BstDSI CCRYGG 2 cut(s) 123, 361
BstENI CCTNNNNNAGG 1 cut(s) 346
BstF5I GGATG 2 cut(s) 115, 326
BstFNI CGCG 1 cut(s) 363
BstHHI GCGC 1 cut(s) 259
BstKTI GATC 2 cut(s) 89, 183
BstMBI GATC 2 cut(s) 86, 180
BstMWI GCNNNNNNNGC 2 cut(s) 58, 369
BstNI CCWGG 2 cut(s) 34, 83
BstNSI RCATGY 2 cut(s) 31, 61
BstSCI CCNGG 3 cut(s) 32, 81, 223
BstUI CGCG 1 cut(s) 363
BstX2I RGATCY 1 cut(s) 86
BstXI CCANNNNNNTGG 1 cut(s) 124
BstYI RGATCY 1 cut(s) 86
BtgI CCRYGG 2 cut(s) 123, 361
BtsCI GGATG 2 cut(s) 115, 326
Cac8I GCNNGC 1 cut(s) 59
CfoI GCGC 1 cut(s) 259
Cfr13I GGNCC 1 cut(s) 205
Cfr42I CCGCGG 1 cut(s) 364
CseI GACGC 2 cut(s) 122, 258
Csp6I GTAC 1 cut(s) 358
CviAII CATG 6 cut(s) 28, 58, 124, 137, 260, 373
CviQI GTAC 1 cut(s) 358
DpnI GATC 2 cut(s) 88, 182
DpnII GATC 2 cut(s) 86, 180
EciI GGCGGA 1 cut(s) 279
Eco130I CCWWGG 1 cut(s) 123
Eco47I GGWCC 1 cut(s) 205
Eco88I CYCGRG 1 cut(s) 300
EcoNI CCTNNNNNAGG 1 cut(s) 346
EcoRII CCWGG 2 cut(s) 32, 81
EcoT14I CCWWGG 1 cut(s) 123
ErhI CCWWGG 1 cut(s) 123
FaeI CATG 6 cut(s) 31, 61, 127, 140, 263, 376
FaqI GGGAC 1 cut(s) 218
FatI CATG 6 cut(s) 27, 57, 123, 136, 259, 372
Fnu4HI GCNGC 2 cut(s) 255, 364
FokI GGATG 2 cut(s) 122, 333
Fsp4HI GCNGC 2 cut(s) 255, 364
FspBI CTAG 1 cut(s) 98
GlaI GCGC 1 cut(s) 258
GluI GCNGC 2 cut(s) 255, 364
GsaI CCCAGC 1 cut(s) 146
HapII CCGG 1 cut(s) 225
HgaI GACGC 2 cut(s) 122, 258
HhaI GCGC 1 cut(s) 259
Hin1I GRCGYC 1 cut(s) 114
Hin1II CATG 6 cut(s) 31, 61, 127, 140, 263, 376
Hin6I GCGC 1 cut(s) 257
HinP1I GCGC 1 cut(s) 257
HpaII CCGG 1 cut(s) 225
HphI GGTGA 2 cut(s) 178, 290
Hpy188III TCNNGA 2 cut(s) 248, 273
Hpy99I CGWCG 1 cut(s) 274
HpyAV CCTTC 1 cut(s) 342
HpyF10VI GCNNNNNNNGC 2 cut(s) 58, 369
Hsp92I GRCGYC 1 cut(s) 114
Hsp92II CATG 6 cut(s) 31, 61, 127, 140, 263, 376
HspAI GCGC 1 cut(s) 257
KpnI GGTACC 1 cut(s) 361
KspI CCGCGG 1 cut(s) 364
Kzo9I GATC 2 cut(s) 86, 180
LmnI GCTCC 4 cut(s) 133, 175, 232, 266
LpnPI CCDG 8 cut(s) 2, 19, 46, 68, 87, 95, 156, 238
LweI GCATC 1 cut(s) 230
MaeI CTAG 1 cut(s) 98
MaeIII GTNAC 1 cut(s) 335
MalI GATC 2 cut(s) 88, 182
MboI GATC 2 cut(s) 86, 180
MboII GAAGA 1 cut(s) 175
MfeI CAATTG 1 cut(s) 47
MflI RGATCY 1 cut(s) 86
MluCI AATT 2 cut(s) 47, 64
MnlI CCTC 5 cut(s) 162, 165, 269, 289, 322
MslI CAYNNNNRTG 2 cut(s) 122, 377
MspA1I CMGCKG 1 cut(s) 363
MspI CCGG 1 cut(s) 225
MspR9I CCNGG 3 cut(s) 34, 83, 225
MunI CAATTG 1 cut(s) 47
MvaI CCWGG 2 cut(s) 34, 83
MvnI CGCG 1 cut(s) 363
MwoI GCNNNNNNNGC 2 cut(s) 58, 369
NciI CCSGG 1 cut(s) 225
NcoI CCATGG 1 cut(s) 123
NdeII GATC 2 cut(s) 86, 180
NlaIII CATG 6 cut(s) 31, 61, 127, 140, 263, 376
NlaIV GGNNCC 6 cut(s) 88, 129, 177, 206, 222, 359
NmeAIII GCCGAG 1 cut(s) 319
NmuCI GTSAC 1 cut(s) 335
NspI RCATGY 2 cut(s) 31, 61
PaeI GCATGC 1 cut(s) 61
PkrI GCNGC 2 cut(s) 256, 365
Psp6I CCWGG 2 cut(s) 32, 81
PspFI CCCAGC 1 cut(s) 142
PspGI CCWGG 2 cut(s) 32, 81
PspN4I GGNNCC 6 cut(s) 88, 129, 177, 206, 222, 359
PspPI GGNCC 1 cut(s) 205
PsuI RGATCY 1 cut(s) 86
RsaI GTAC 1 cut(s) 359
RsaNI GTAC 1 cut(s) 358
RseI CAYNNNNRTG 2 cut(s) 122, 377
SacII CCGCGG 1 cut(s) 364
SatI GCNGC 2 cut(s) 255, 364
Sau3AI GATC 2 cut(s) 86, 180
Sau96I GGNCC 1 cut(s) 205
ScrFI CCNGG 3 cut(s) 34, 83, 225
SetI ASST 6 cut(s) 99, 105, 237, 280, 337, 395
SfaNI GCATC 1 cut(s) 230
Sfr303I CCGCGG 1 cut(s) 364
SgrBI CCGCGG 1 cut(s) 364
SinI GGWCC 1 cut(s) 205
SmiMI CAYNNNNRTG 2 cut(s) 122, 377
SphI GCATGC 1 cut(s) 61
Sse9I AATT 2 cut(s) 47, 64
SsiI CCGC 7 cut(s) 131, 254, 264, 305, 361, 363, 366
SspMI CTAG 1 cut(s) 98
StyD4I CCNGG 3 cut(s) 32, 81, 223
StyI CCWWGG 1 cut(s) 123
TaqI TCGA 3 cut(s) 197, 238, 272
TaqII GACCGA 1 cut(s) 222
TasI AATT 2 cut(s) 47, 64
TauI GCSGC 2 cut(s) 257, 366
TseFI GTSAC 1 cut(s) 335
Tsp45I GTSAC 1 cut(s) 335
TspGWI ACGGA 1 cut(s) 245
VpaK11BI GGWCC 1 cut(s) 205
XagI CCTNNNNNAGG 1 cut(s) 346
XceI RCATGY 2 cut(s) 31, 61
XspI CTAG 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.