Rroxscaffold_6G00396150

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0019564
Physical Location & Seq
Forward (+)
17381064 .. 17387228
6165 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00396150.1

Sequence Viewer

Length: 297 bp
ATGCCTCGGGACACTATCAATCCAAATGAAGCCTTGAATCCTGGATTGACTTACGATGCAAAACCGAGAGAAGACGAACCTTTTGTAGGTGAAGAAAGAGCTGATCTTCTTCATGTCTTCGATGTGGAACCGATAAGCTTCGGTCTCCGGCTTCGATCTTTGTCTTGGCACGGCGCGTGGAGGCGCCTCGGCTACGATCTATCTAGGGGCAAGCGGGGCTCGGCTGTAGCCTCGCTTAGGCGTGTTCCGGTGGGTCACTCCTTTGGCGGGAGTTTGCACCGTGTGGCGGTAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

98

Amino Acids

10.91

Weight (kDa)

9.5

Isoelectric Point (pI)

53.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 183
AccII CGCG 1 cut(s) 176
AciI CCGC 3 cut(s) 214, 267, 287
AcyI GRCGYC 1 cut(s) 184
AdeI CACNNNGTG 1 cut(s) 283
AfiI CCNNNNNNNGG 4 cut(s) 86, 237, 267, 286
AgsI TTSAA 1 cut(s) 37
AjnI CCWGG 1 cut(s) 40
AluBI AGCT 2 cut(s) 101, 138
AluI AGCT 2 cut(s) 101, 138
Alw26I GTCTC 1 cut(s) 149
Ama87I CYCGRG 1 cut(s) 6
ArsI GACNNNNNNTTYG 2 cut(s) 65, 97
AspLEI GCGC 2 cut(s) 176, 186
AsuHPI GGTGA 1 cut(s) 101
AvaI CYCGRG 1 cut(s) 6
BanI GGYRCC 1 cut(s) 183
BanII GRGCYC 1 cut(s) 221
BbsI GAAGAC 2 cut(s) 78, 109
BceAI ACGGC 1 cut(s) 187
BciT130I CCWGG 1 cut(s) 42
BcoDI GTCTC 1 cut(s) 149
BfaI CTAG 1 cut(s) 204
BfmI CTRYAG 1 cut(s) 225
BfoI RGCGCY 1 cut(s) 187
Bme1390I CCNGG 1 cut(s) 42
BmeT110I CYCGRG 1 cut(s) 6
BmiI GGNNCC 2 cut(s) 129, 185
BmrFI CCNGG 1 cut(s) 42
BmsI GCATC 1 cut(s) 46
BpiI GAAGAC 2 cut(s) 78, 109
Bpu10I CCTNAGC 1 cut(s) 236
BsaHI GRCGYC 1 cut(s) 184
BsaI GGTCTC 1 cut(s) 149
BsaJI CCNNGG 2 cut(s) 5, 187
BsaWI WCCGGW 1 cut(s) 247
Bsc4I CCNNNNNNNGG 4 cut(s) 86, 237, 267, 286
BseBI CCWGG 1 cut(s) 42
BseDI CCNNGG 2 cut(s) 5, 187
BseLI CCNNNNNNNGG 4 cut(s) 86, 237, 267, 286
Bsh1236I CGCG 1 cut(s) 176
BshNI GGYRCC 1 cut(s) 183
BsiHKCI CYCGRG 1 cut(s) 6
BsiSI CCGG 2 cut(s) 148, 248
BslFI GGGAC 1 cut(s) 23
BslI CCNNNNNNNGG 4 cut(s) 86, 237, 267, 286
BsmAI GTCTC 1 cut(s) 149
BsmFI GGGAC 1 cut(s) 23
Bso31I GGTCTC 1 cut(s) 149
BsoBI CYCGRG 1 cut(s) 6
Bsp1286I GDGCHC 1 cut(s) 221
Bsp143I GATC 3 cut(s) 103, 155, 196
BspACI CCGC 3 cut(s) 214, 267, 287
BspFNI CGCG 1 cut(s) 176
BspLI GGNNCC 2 cut(s) 129, 185
BspT107I GGYRCC 1 cut(s) 183
BspTNI GGTCTC 1 cut(s) 149
BssECI CCNNGG 2 cut(s) 5, 187
BssMI GATC 3 cut(s) 103, 155, 196
BssNI GRCGYC 1 cut(s) 184
Bst2UI CCWGG 1 cut(s) 42
Bst4CI ACNGT 1 cut(s) 281
BstACI GRCGYC 1 cut(s) 184
BstC8I GCNNGC 1 cut(s) 212
BstDEI CTNAG 1 cut(s) 236
BstENI CCTNNNNNAGG 2 cut(s) 84, 235
BstFNI CGCG 1 cut(s) 176
BstH2I RGCGCY 1 cut(s) 187
BstHHI GCGC 2 cut(s) 176, 186
BstKTI GATC 3 cut(s) 106, 158, 199
BstMAI GTCTC 1 cut(s) 149
BstMBI GATC 3 cut(s) 103, 155, 196
BstMWI GCNNNNNNNGC 1 cut(s) 216
BstNI CCWGG 1 cut(s) 42
BstSCI CCNGG 1 cut(s) 40
BstSFI CTRYAG 1 cut(s) 225
BstUI CGCG 1 cut(s) 176
BstV2I GAAGAC 2 cut(s) 78, 109
Cac8I GCNNGC 1 cut(s) 212
CfoI GCGC 2 cut(s) 176, 186
CviAII CATG 2 cut(s) 113, 294
CviJI RGCY 8 cut(s) 32, 101, 138, 151, 192, 219, 224, 230
CviKI_1 RGCY 8 cut(s) 32, 101, 138, 151, 192, 219, 224, 230
DdeI CTNAG 1 cut(s) 236
DinI GGCGCC 1 cut(s) 185
DpnI GATC 3 cut(s) 105, 157, 198
DpnII GATC 3 cut(s) 103, 155, 196
DraIII CACNNNGTG 1 cut(s) 283
Eco24I GRGCYC 1 cut(s) 221
Eco31I GGTCTC 1 cut(s) 149
Eco88I CYCGRG 1 cut(s) 6
EcoNI CCTNNNNNAGG 2 cut(s) 84, 235
EcoRII CCWGG 1 cut(s) 40
EcoT38I GRGCYC 1 cut(s) 221
EgeI GGCGCC 1 cut(s) 185
EheI GGCGCC 1 cut(s) 185
FaeI CATG 2 cut(s) 116, 297
FaiI YATR 2 cut(s) 114, 295
FaqI GGGAC 1 cut(s) 23
FatI CATG 2 cut(s) 112, 293
FauI CCCGC 2 cut(s) 207, 260
FriOI GRGCYC 1 cut(s) 221
FspBI CTAG 1 cut(s) 204
GlaI GCGC 2 cut(s) 175, 185
HaeII RGCGCY 1 cut(s) 187
HapII CCGG 2 cut(s) 148, 248
HhaI GCGC 2 cut(s) 176, 186
Hin1I GRCGYC 1 cut(s) 184
Hin1II CATG 2 cut(s) 116, 297
Hin6I GCGC 2 cut(s) 174, 184
HinP1I GCGC 2 cut(s) 174, 184
HindIII AAGCTT 1 cut(s) 136
HinfI GANTC 1 cut(s) 37
HpaII CCGG 2 cut(s) 148, 248
HphI GGTGA 1 cut(s) 101
Hpy188III TCNNGA 1 cut(s) 8
HpyCH4III ACNGT 1 cut(s) 281
HpyCH4V TGCA 2 cut(s) 59, 277
HpyF10VI GCNNNNNNNGC 1 cut(s) 216
HpyF3I CTNAG 1 cut(s) 236
Hsp92I GRCGYC 1 cut(s) 184
Hsp92II CATG 2 cut(s) 116, 297
HspAI GCGC 2 cut(s) 174, 184
KasI GGCGCC 1 cut(s) 183
Kzo9I GATC 3 cut(s) 103, 155, 196
LpnPI CCDG 4 cut(s) 27, 54, 161, 261
LweI GCATC 1 cut(s) 46
MaeI CTAG 1 cut(s) 204
MaeIII GTNAC 1 cut(s) 254
MalI GATC 3 cut(s) 105, 157, 198
MboI GATC 3 cut(s) 103, 155, 196
MboII GAAGA 5 cut(s) 83, 98, 101, 104, 109
MhlI GDGCHC 1 cut(s) 221
Mly113I GGCGCC 1 cut(s) 184
MnlI CCTC 4 cut(s) 15, 174, 197, 241
MspI CCGG 2 cut(s) 148, 248
MspR9I CCNGG 1 cut(s) 42
MvaI CCWGG 1 cut(s) 42
MvnI CGCG 1 cut(s) 176
MwoI GCNNNNNNNGC 1 cut(s) 216
NarI GGCGCC 1 cut(s) 184
NdeII GATC 3 cut(s) 103, 155, 196
NlaIII CATG 2 cut(s) 116, 297
NlaIV GGNNCC 2 cut(s) 129, 185
NmeAIII GCCGAG 2 cut(s) 168, 200
NmuCI GTSAC 1 cut(s) 254
PfeI GAWTC 1 cut(s) 37
PfoI TCCNGGA 1 cut(s) 40
PluTI GGCGCC 1 cut(s) 187
Psp6I CCWGG 1 cut(s) 40
PspGI CCWGG 1 cut(s) 40
PspN4I GGNNCC 2 cut(s) 129, 185
Sau3AI GATC 3 cut(s) 103, 155, 196
ScrFI CCNGG 1 cut(s) 42
SduI GDGCHC 1 cut(s) 221
SetI ASST 4 cut(s) 82, 91, 103, 140
SfaNI GCATC 1 cut(s) 46
SfcI CTRYAG 1 cut(s) 225
SfoI GGCGCC 1 cut(s) 185
SsiI CCGC 3 cut(s) 214, 267, 287
SspDI GGCGCC 1 cut(s) 183
SspMI CTAG 1 cut(s) 204
StyD4I CCNGG 1 cut(s) 40
TaaI ACNGT 1 cut(s) 281
TaqI TCGA 2 cut(s) 120, 154
TaqII GACCGA 1 cut(s) 131
TfiI GAWTC 1 cut(s) 37
TseFI GTSAC 1 cut(s) 254
Tsp45I GTSAC 1 cut(s) 254
TspDTI ATGAA 2 cut(s) 42, 101
XagI CCTNNNNNAGG 2 cut(s) 84, 235
XspI CTAG 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.