Rroxscaffold_2G00083560

phosphate transporter PHO1 homolog

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
6252773 .. 6256672
3900 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00083560.1

Sequence Viewer

Length: 2100 bp
ATGAAGTTTGGGAAGGAATTTGTGTCCCAAATGGTGCCGGAATGGCAAGAAGCGTACTTGGACTACAACTCACTCAAGGCTCTCTTGAAAGACCTCTTGCGTTTTCTACAGACCAGAACACCAACAGCAATGGCTTCAACTCCAAATGGTTCAGTTTTGAACAGGAGGGCATCCCTCTACAGAGCCTTTAGTGGGCTAACAAGCCGACACAGGGACTCTCCGAGGGCGAAAGAGGATGAAGAGATTCTTGTCAGTGAAGATGGGGAGGATGGGAGGTACCAGACGTTTGTGACGTTCTCGGATGAGGAAAGAGGGTATGAGGTTAAGTTTTTCAATGAGCTTGATTATGAGTTCAACAAAGTGGTTGGGTTCTACAAGAAGAAAGTTCAAGAAGTGGTGGAGGAGGCTGATGAGTTGAGTAGACAGATGGATGCTTTGATTGCTCTGAGGCTCAAGGTTGATAATCCTATGGTGGATTTTGGGGATGGTCCAAATTCAGCTGTTCATCCCATAAATGGCAGAAGTGCAGGAGGGCAGCAGATGGATGTGATTGAGGAAGTGGAGATGATGGAAGATGAAGAGAGAGGAGACAATGAACCAAAAACTAGAACCCAGAAGGCAAATGGAGGTGTAGAGGGCTTTAAACCTCCTCAATTAGAGATTTTGGAACATGTAAAGATCAATGTCCCACCAGAAACTCCGGTCTCAACTCTGAAAGGGATCATCCTCAACAGTGAAAATCAAGAGCTGTCATTCAGCAAGAAAGAATTGAGGAAAGCAGAAGAGCAAATGAAACAGGCTTTCAATGAGTTCTACCAAAAGCTTCGGCTTTTGAAAAGTTACTGTTTCTTGAACCAATTGGCTTTCTCAAAGATCATGAAGAAACATGATAAGATCACTTCAAGGAATGCATCAAAGGTTCACTTGAACATGATGGAAACCTCTTATCTCGGGACCTGTGATGATGTTACTAGGCTAATAGAAAGGGTGGAGGCTACCTTCATAAAACACTTCGCAAATGGAAATCACAGAAAAGGAATGAAGACATTAAGACCAACAGCCAGAAGGGAAAAGCATAGAAGTACATTTTTCTTGGGACTGTTCTCTGGGTGTTCAATTTCACTTGTAGTGGCCATTATAGTGCTTATACATGCAAGAGGTCTCCTTGAAAGTGAGGGGCGTAGCCTGTACATGGAAAACATATTTCCTCTTTACAGCTTGTTTGGATTCATAGTCCTTCATATGGTCGTCTTCTCAGCAAATATATATTACTGGAGGCGATACCGAGTAAATTATTCATTTATCTTTGGCTTTAAGAAAGGCACAGAACTGGGGTACAGACAGTCTTTCCTCATGAGTTCCGGCCTTGCAGTTCTGGCATTGGCTGGTGTCCTCTCAAATTTGGATATGGAGATGGACCCAAGTACACAAAGCTTCAGAGCCTTGACAGAATTAGTCCCTTTGGGTCTAGTCATTGTTCTGGTTGGTATAATGTTATGTCCTTTCAACATAGTATATCGTTCCTCCCGATTTTTCCTCATCCAAGCTGTAGTTCATTGCGTTTGTGCTCCTCTGTACAAGTGTCTGCGACGCTTGGTGGAGGAGAAAGATGGAATGCAAGGGTTAAATGGGCTGAAATACTTCTCAACAATTGTCGCAGTTGCCATGAGAACAAGTTTTGATATGAAAAAAGGGATGACATGGAAGATCCTAGCTATGACTAGCTCAATTGTTGCAACAGTTGTCAGTACTTACTGGGATATTGTCATAGATTGGGGTCTTTTGAGACGGAATTCTGAAAACCGTTGGCTCAGAGACAAACTCCTTATACCAAACAAAAGTGTTTATTTCGTAGCCATGGTGTTAAATGTTCTACTGAGACTTGCTTGGATGCAGTCAGTACTAGGATTTCGAGAAGCACCATTCATCCATAGAACAGCCTTAGTTGCAATAGTTGCCTGTTTAGAAATAATTCGCCGTGGCATTTGGAACTTCTTCCGGTTGGAGAATGAGCACTTGAATAATGTTGGGAAGTATCGAGCATTCAAGTCTGTACCCCTACCTTTCAACTATTACCATGATGAAGGCAAGAGCATATAA

Protein Analysis

699

Amino Acids

80.31

Weight (kDa)

9.09

Isoelectric Point (pI)

39.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPX PF03105 1 - 311 4.1e-70 SPX domain
EXS PF03124 401 - 527 9.5e-25 EXS family
EXS PF03124 526 - 673 4.3e-47 EXS family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0010732)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 276
AccB1I GGYRCC 2 cut(s) 34, 276
AccI GTMKAC 1 cut(s) 421
AclWI GGATC 2 cut(s) 728, 1702
AcoI YGGCCR 1 cut(s) 1131
AcsI RAATTY 4 cut(s) 17, 493, 1399, 1792
AcuI CTGAAG 1 cut(s) 1420
AfiI CCNNNNNNNGG 5 cut(s) 192, 211, 515, 1192, 1243
AflIII ACRYGT 1 cut(s) 670
AjuI GAANNNNNNNTTGG 2 cut(s) 1536, 1568
AluBI AGCT 9 cut(s) 340, 500, 748, 823, 1218, 1434, 1547, 1715, 1725
AluI AGCT 9 cut(s) 340, 500, 748, 823, 1218, 1434, 1547, 1715, 1725
Alw21I GWGCWC 2 cut(s) 1570, 2016
Alw26I GTCTC 6 cut(s) 582, 709, 1166, 1780, 1809, 1873
AlwI GGATC 2 cut(s) 728, 1702
Ama87I CYCGRG 1 cut(s) 950
AoxI GGCC 2 cut(s) 1131, 1363
ApeKI GCWGC 1 cut(s) 535
ApoI RAATTY 4 cut(s) 17, 493, 1399, 1792
Asp700I GAANNNNTTC 4 cut(s) 243, 1640, 1971, 1994
Asp718I GGTACC 1 cut(s) 276
AspS9I GGNCC 3 cut(s) 488, 954, 1417
AvaI CYCGRG 1 cut(s) 950
AvaII GGWCC 3 cut(s) 488, 954, 1417
BalI TGGCCA 1 cut(s) 1133
BanI GGYRCC 2 cut(s) 34, 276
BbsI GAAGAC 2 cut(s) 1049, 1243
Bbv12I GWGCWC 2 cut(s) 1570, 2016
BbvI GCAGC 1 cut(s) 547
BccI CCATC 9 cut(s) 254, 263, 421, 479, 535, 562, 928, 1408, 1604
BceAI ACGGC 1 cut(s) 1962
BcoDI GTCTC 6 cut(s) 582, 709, 1166, 1780, 1809, 1873
BfaI CTAG 6 cut(s) 606, 972, 1469, 1712, 1722, 1904
BfmI CTRYAG 3 cut(s) 107, 178, 1548
BglI GCCNNNNNGGC 1 cut(s) 43
BisI GCNGC 1 cut(s) 536
BlsI GCNGC 1 cut(s) 537
BmcAI AGTACT 2 cut(s) 1750, 1902
Bme18I GGWCC 3 cut(s) 488, 954, 1417
BmeT110I CYCGRG 1 cut(s) 950
BmgT120I GGNCC 3 cut(s) 488, 954, 1417
BmiI GGNNCC 4 cut(s) 36, 278, 955, 1419
BmrI ACTGGG 2 cut(s) 1340, 1765
BmsI GCATC 4 cut(s) 179, 421, 920, 1881
BmuI ACTGGG 2 cut(s) 1340, 1765
BpiI GAAGAC 2 cut(s) 1049, 1243
BplI GAGNNNNNCTC 2 cut(s) 1806, 1838
BpmI CTGGAG 1 cut(s) 1294
BpuEI CTTGAG 2 cut(s) 59, 437
BsaI GGTCTC 2 cut(s) 709, 1166
BsaJI CCNNGG 3 cut(s) 221, 1857, 1978
BsaWI WCCGGW 2 cut(s) 700, 1998
Bsc4I CCNNNNNNNGG 5 cut(s) 192, 211, 515, 1192, 1243
Bse1I ACTGG 3 cut(s) 1277, 1335, 1760
Bse3DI GCAATG 2 cut(s) 135, 1555
BseDI CCNNGG 3 cut(s) 221, 1857, 1978
BseLI CCNNNNNNNGG 5 cut(s) 192, 211, 515, 1192, 1243
BseMI GCAATG 2 cut(s) 135, 1555
BseMII CTCAG 4 cut(s) 437, 1269, 1825, 1868
BseNI ACTGG 3 cut(s) 1277, 1335, 1760
BseRI GAGGAG 5 cut(s) 416, 600, 639, 1560, 1616
BseXI GCAGC 1 cut(s) 547
BsgI GTGCAG 1 cut(s) 546
BshFI GGCC 2 cut(s) 1133, 1365
BshNI GGYRCC 2 cut(s) 34, 276
BsiHKAI GWGCWC 2 cut(s) 1570, 2016
BsiHKCI CYCGRG 1 cut(s) 950
BsiSI CCGG 4 cut(s) 38, 701, 1362, 1999
BslFI GGGAC 6 cut(s) 10, 227, 671, 967, 1110, 1442
BslI CCNNNNNNNGG 5 cut(s) 192, 211, 515, 1192, 1243
BsmAI GTCTC 6 cut(s) 582, 709, 1166, 1780, 1809, 1873
BsmBI CGTCTC 1 cut(s) 1780
BsmFI GGGAC 6 cut(s) 10, 227, 671, 967, 1110, 1442
BsmI GAATGC 3 cut(s) 913, 1620, 2042
BsnI GGCC 2 cut(s) 1133, 1365
Bso31I GGTCTC 2 cut(s) 709, 1166
BsoBI CYCGRG 1 cut(s) 950
Bsp1286I GDGCHC 2 cut(s) 1570, 2016
Bsp1407I TGTACA 2 cut(s) 1188, 1575
Bsp143I GATC 5 cut(s) 678, 720, 873, 894, 1707
Bsp19I CCATGG 1 cut(s) 1857
BspANI GGCC 2 cut(s) 1133, 1365
BspCNI CTCAG 4 cut(s) 438, 1268, 1824, 1869
BspHI TCATGA 2 cut(s) 876, 1353
BspLI GGNNCC 4 cut(s) 36, 278, 955, 1419
BspPI GGATC 2 cut(s) 728, 1702
BspQI GCTCTTC 1 cut(s) 777
BspT107I GGYRCC 2 cut(s) 34, 276
BspTNI GGTCTC 2 cut(s) 709, 1166
BsrDI GCAATG 2 cut(s) 135, 1555
BsrGI TGTACA 2 cut(s) 1188, 1575
BsrI ACTGG 3 cut(s) 1277, 1335, 1760
BssECI CCNNGG 3 cut(s) 221, 1857, 1978
BssMI GATC 5 cut(s) 678, 720, 873, 894, 1707
BssT1I CCWWGG 1 cut(s) 1857
Bst4CI ACNGT 6 cut(s) 734, 845, 1101, 1344, 1741, 1805
Bst6I CTCTTC 3 cut(s) 234, 573, 777
BstAPI GCANNNNNTGC 1 cut(s) 1955
BstAUI TGTACA 2 cut(s) 1188, 1575
BstDEI CTNAG 5 cut(s) 446, 1255, 1811, 1877, 1942
BstDSI CCRYGG 2 cut(s) 1857, 1978
BstKTI GATC 5 cut(s) 681, 723, 876, 897, 1710
BstMAI GTCTC 6 cut(s) 582, 709, 1166, 1780, 1809, 1873
BstMBI GATC 5 cut(s) 678, 720, 873, 894, 1707
BstMWI GCNNNNNNNGC 5 cut(s) 43, 440, 1376, 1946, 1955
BstNSI RCATGY 2 cut(s) 674, 1154
BstSFI CTRYAG 3 cut(s) 107, 178, 1548
BstV1I GCAGC 1 cut(s) 547
BstV2I GAAGAC 2 cut(s) 1049, 1243
BstX2I RGATCY 1 cut(s) 1707
BstYI RGATCY 1 cut(s) 1707
BsuRI GGCC 2 cut(s) 1133, 1365
BtgI CCRYGG 2 cut(s) 1857, 1978
BtsIMutI CAGTG 2 cut(s) 259, 739
CciI TCATGA 2 cut(s) 876, 1353
Cfr13I GGNCC 3 cut(s) 488, 954, 1417
CseI GACGC 1 cut(s) 1599
DdeI CTNAG 5 cut(s) 446, 1255, 1811, 1877, 1942
DpnI GATC 5 cut(s) 680, 722, 875, 896, 1709
DpnII GATC 5 cut(s) 678, 720, 873, 894, 1707
DraI TTTAAA 1 cut(s) 643
EaeI YGGCCR 1 cut(s) 1131
Eam1104I CTCTTC 3 cut(s) 234, 573, 777
EarI CTCTTC 3 cut(s) 234, 573, 777
Eco130I CCWWGG 1 cut(s) 1857
Eco31I GGTCTC 2 cut(s) 709, 1166
Eco47I GGWCC 3 cut(s) 488, 954, 1417
Eco57I CTGAAG 1 cut(s) 1420
Eco88I CYCGRG 1 cut(s) 950
EcoO109I RGGNCCY 1 cut(s) 954
EcoRI GAATTC 1 cut(s) 1792
EcoT14I CCWWGG 1 cut(s) 1857
EcoT22I ATGCAT 1 cut(s) 913
ErhI CCWWGG 1 cut(s) 1857
Esp3I CGTCTC 1 cut(s) 1780
FalI AAGNNNNNCTT 6 cut(s) 68, 100, 231, 263, 908, 940
FaqI GGGAC 6 cut(s) 10, 227, 671, 967, 1110, 1442
FauNDI CATATG 1 cut(s) 1242
FblI GTMKAC 1 cut(s) 421
Fnu4HI GCNGC 1 cut(s) 536
Fsp4HI GCNGC 1 cut(s) 536
FspBI CTAG 6 cut(s) 606, 972, 1469, 1712, 1722, 1904
GluI GCNGC 1 cut(s) 536
GsuI CTGGAG 1 cut(s) 1294
HaeIII GGCC 2 cut(s) 1133, 1365
HapII CCGG 4 cut(s) 38, 701, 1362, 1999
HgaI GACGC 1 cut(s) 1599
HindIII AAGCTT 2 cut(s) 821, 1432
HinfI GANTC 3 cut(s) 215, 244, 1227
HpaII CCGG 4 cut(s) 38, 701, 1362, 1999
Hpy166II GTNNAC 3 cut(s) 422, 922, 1427
Hpy188I TCNGA 7 cut(s) 222, 301, 447, 714, 1439, 1798, 1814
Hpy188III TCNNGA 9 cut(s) 85, 389, 743, 850, 877, 952, 1354, 1527, 1913
Hpy8I GTNNAC 3 cut(s) 422, 922, 1427
Hpy99I CGWCG 1 cut(s) 1593
HpyAV CCTTC 6 cut(s) 7, 610, 1009, 1059, 1247, 2078
HpyCH4III ACNGT 6 cut(s) 734, 845, 1101, 1344, 1741, 1805
HpyCH4IV ACGT 2 cut(s) 284, 293
HpyCH4V TGCA 8 cut(s) 527, 911, 1154, 1370, 1618, 1736, 1894, 1949
HpyF10VI GCNNNNNNNGC 5 cut(s) 43, 440, 1376, 1946, 1955
HpyF3I CTNAG 5 cut(s) 446, 1255, 1811, 1877, 1942
HpySE526I ACGT 2 cut(s) 284, 293
KpnI GGTACC 1 cut(s) 280
Kzo9I GATC 5 cut(s) 678, 720, 873, 894, 1707
LguI GCTCTTC 1 cut(s) 777
LmnI GCTCC 1 cut(s) 1573
Lsp1109I GCAGC 1 cut(s) 547
LweI GCATC 4 cut(s) 179, 421, 920, 1881
MaeI CTAG 6 cut(s) 606, 972, 1469, 1712, 1722, 1904
MaeII ACGT 2 cut(s) 284, 293
MaeIII GTNAC 3 cut(s) 289, 839, 967
MalI GATC 5 cut(s) 680, 722, 875, 896, 1709
MboI GATC 5 cut(s) 678, 720, 873, 894, 1707
MfeI CAATTG 3 cut(s) 857, 1650, 1728
MflI RGATCY 1 cut(s) 1707
MhlI GDGCHC 2 cut(s) 1570, 2016
MlsI TGGCCA 1 cut(s) 1133
MluNI TGGCCA 1 cut(s) 1133
MlyI GAGTC 1 cut(s) 209
MmeI TCCRAC 1 cut(s) 1983
Mox20I TGGCCA 1 cut(s) 1133
Mph1103I ATGCAT 1 cut(s) 913
MroXI GAANNNNTTC 4 cut(s) 243, 1640, 1971, 1994
MscI TGGCCA 1 cut(s) 1133
MseI TTAA 6 cut(s) 324, 642, 1049, 1314, 1625, 1865
MslI CAYNNNNRTG 1 cut(s) 1139
Msp20I TGGCCA 1 cut(s) 1133
MspA1I CMGCKG 1 cut(s) 500
MspI CCGG 4 cut(s) 38, 701, 1362, 1999
MunI CAATTG 3 cut(s) 857, 1650, 1728
Mva1269I GAATGC 3 cut(s) 913, 1620, 2042
MwoI GCNNNNNNNGC 5 cut(s) 43, 440, 1376, 1946, 1955
NcoI CCATGG 1 cut(s) 1857
NdeI CATATG 1 cut(s) 1242
NdeII GATC 5 cut(s) 678, 720, 873, 894, 1707
NlaIV GGNNCC 4 cut(s) 36, 278, 955, 1419
NmuCI GTSAC 1 cut(s) 289
NsiI ATGCAT 1 cut(s) 913
NspI RCATGY 2 cut(s) 674, 1154
PagI TCATGA 2 cut(s) 876, 1353
PciI ACATGT 1 cut(s) 670
PciSI GCTCTTC 1 cut(s) 777
PcsI WCGNNNNNNNCGW 2 cut(s) 290, 1525
PctI GAATGC 3 cut(s) 913, 1620, 2042
PdmI GAANNNNTTC 4 cut(s) 243, 1640, 1971, 1994
PfeI GAWTC 2 cut(s) 244, 1227
PkrI GCNGC 1 cut(s) 537
PleI GAGTC 1 cut(s) 209
PpsI GAGTC 1 cut(s) 209
PpuMI RGGWCCY 1 cut(s) 954
PscI ACATGT 1 cut(s) 670
Psp5II RGGWCCY 1 cut(s) 954
PspN4I GGNNCC 4 cut(s) 36, 278, 955, 1419
PspPI GGNCC 3 cut(s) 488, 954, 1417
PspPPI RGGWCCY 1 cut(s) 954
PsuI RGATCY 1 cut(s) 1707
PvuII CAGCTG 1 cut(s) 500
RseI CAYNNNNRTG 1 cut(s) 1139
SapI GCTCTTC 1 cut(s) 777
SaqAI TTAA 6 cut(s) 324, 642, 1049, 1314, 1625, 1865
SatI GCNGC 1 cut(s) 536
Sau3AI GATC 5 cut(s) 678, 720, 873, 894, 1707
Sau96I GGNCC 3 cut(s) 488, 954, 1417
ScaI AGTACT 2 cut(s) 1750, 1902
SchI GAGTC 1 cut(s) 209
SduI GDGCHC 2 cut(s) 1570, 2016
SfaNI GCATC 4 cut(s) 179, 421, 920, 1881
SfcI CTRYAG 3 cut(s) 107, 178, 1548
SinI GGWCC 3 cut(s) 488, 954, 1417
SmiMI CAYNNNNRTG 1 cut(s) 1139
SmlI CTYRAG 2 cut(s) 74, 452
SmoI CTYRAG 2 cut(s) 74, 452
SspMI CTAG 6 cut(s) 606, 972, 1469, 1712, 1722, 1904
StyI CCWWGG 1 cut(s) 1857
TaaI ACNGT 6 cut(s) 734, 845, 1101, 1344, 1741, 1805
TaiI ACGT 2 cut(s) 287, 296
TaqI TCGA 2 cut(s) 1912, 2038
TatI WGTACW 6 cut(s) 1082, 1188, 1424, 1575, 1748, 1900
TfiI GAWTC 2 cut(s) 244, 1227
Tru1I TTAA 6 cut(s) 324, 642, 1049, 1314, 1625, 1865
Tru9I TTAA 6 cut(s) 324, 642, 1049, 1314, 1625, 1865
TscAI CASTG 2 cut(s) 259, 739
TseFI GTSAC 1 cut(s) 289
TseI GCWGC 1 cut(s) 535
Tsp45I GTSAC 1 cut(s) 289
TspGWI ACGGA 1 cut(s) 1804
TspRI CASTG 2 cut(s) 259, 739
VpaK11BI GGWCC 3 cut(s) 488, 954, 1417
XapI RAATTY 4 cut(s) 17, 493, 1399, 1792
XceI RCATGY 2 cut(s) 674, 1154
XcmI CCANNNNNNNNNTGG 1 cut(s) 620
XmiI GTMKAC 1 cut(s) 421
XmnI GAANNNNTTC 4 cut(s) 243, 1640, 1971, 1994
XspI CTAG 6 cut(s) 606, 972, 1469, 1712, 1722, 1904
ZrmI AGTACT 2 cut(s) 1750, 1902
Zsp2I ATGCAT 1 cut(s) 913
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.