Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0010732

Physical Location & Seq

Genomic Coordinates Forward (+)

66001687 .. 66002262

Gene Structure 576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0530000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGACTAGTGCCAGAAGTCCGAGCAGAGGTCTCAAAATCTGCTGCCTTGTTACTGCTATTTTCTTAGTAATAGTCCTCGTCGTCATGACGATATTGGCACTCACCGTTTTCAAGCCTAAACAACCCGAGATCAATGCCCGACCCGTTGGCCTTGAAAACATTCAATATACACTCTTTCCGAATGTGACACTAAATGTGACGCTAAGCATGCTCGTCACGATAAATAATAGGAATTATGGAAGTTTTAGTTTCAAGAACACCACGGCATATGTTACTTATCACGACACAGTTGTAGGCTTGGTTCCGATGGAGCATGCCTTTGTCCCTGCACGAGGGAAAATAAACATTACCACCTCTGTGGATCTTATGGGCGACAAGATGATTTCAAACCCTCATTTCATGGAAGATGTGAATACTGGGATTTTCAATTTGATCTCGACTGCTGATTTACATGGGAAAGTGACTGTGCTCAAGTTCATGAAGTTTGGCGCTACAGCTTTTAGCACATGCGACATCTCATTTTCCATAAAGAGCGAGCAAATTGATTCTAAGTGCAAATCCAAACTCAAAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0008150 GO:0012505 GO:0016020 GO:0031984 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048878 GO:0050801 GO:0055062 GO:0055065 GO:0055069 GO:0055076 GO:0055080 GO:0055081 GO:0055083 GO:0065007 GO:0065008 GO:0071944 GO:0072505 GO:0072506 GO:0072507 GO:0098771 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EXS SPX

Protein Analysis

191

Amino Acids

21.09

Weight (kDa)

9.34

Isoelectric Point (pI)

23.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010732)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29060 AT4G25350
fragaria_vesca	FvH4_6g48060 FvH4_6g48060
malus_domestica	MD09G1054400.v1.1 MD17G1052300.v1.1
prunus_persica	Prupe.3G264100_v2.0.a1
pyrus_communis	pycom111g04570
rosa_chinensis	RchiOBHm_Chr2g0167381
rosa_laevigata	RLG00000021712 RLG00000021728
rosa_multiflora	Rmu_sc0001840.1_g000006
rosa_roxburghii	Rroxscaffold_2G00083560
rosa_rugosa	Rorug02G0529900.1 Rorug02G0530000
rosa_samantha	Rh2AG596800 Rh2BG608300 Rh2CG579100 Rh2DG619600
rosa_wichuraiana	Rw2G049680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	369
AfiI	CCNNNNNNNGG	2 cut(s)	26, 332
AgsI	TTSAA	6 cut(s)	112, 155, 164, 253, 387, 427
AhlI	ACTAGT	1 cut(s)	5
AleI	CACNNNNGTG	1 cut(s)	356
AluBI	AGCT	1 cut(s)	497
AluI	AGCT	1 cut(s)	497
Alw21I	GWGCWC	1 cut(s)	471
Alw26I	GTCTC	1 cut(s)	35
AlwI	GGATC	1 cut(s)	369
Ama87I	CYCGRG	1 cut(s)	125
AoxI	GGCC	1 cut(s)	148
ApeKI	GCWGC	1 cut(s)	42
Asp700I	GAANNNNTTC	1 cut(s)	159
AspLEI	GCGC	1 cut(s)	491
AsuHPI	GGTGA	1 cut(s)	94
AvaI	CYCGRG	1 cut(s)	125
BauI	CACGAG	1 cut(s)	330
Bbv12I	GWGCWC	1 cut(s)	471
BbvI	GCAGC	1 cut(s)	29
BccI	CCATC	1 cut(s)	301
BceAI	ACGGC	1 cut(s)	279
BcgI	CGANNNNNNTGC	2 cut(s)	116, 150
BcoDI	GTCTC	1 cut(s)	35
BcuI	ACTAGT	1 cut(s)	5
BfaI	CTAG	1 cut(s)	6
BfmI	CTRYAG	1 cut(s)	492
BfoI	RGCGCY	1 cut(s)	492
BisI	GCNGC	1 cut(s)	43
BlpI	GCTNAGC	1 cut(s)	203
BlsI	GCNGC	1 cut(s)	44
BmeT110I	CYCGRG	1 cut(s)	125
BmiI	GGNNCC	1 cut(s)	303
BmrI	ACTGGG	1 cut(s)	426
BmuI	ACTGGG	1 cut(s)	426
Bpu1102I	GCTNAGC	1 cut(s)	203
BpuEI	CTTGAG	1 cut(s)	455
BsaI	GGTCTC	1 cut(s)	35
BsaJI	CCNNGG	1 cut(s)	261
Bsc4I	CCNNNNNNNGG	2 cut(s)	26, 332
Bse1I	ACTGG	1 cut(s)	421
BseDI	CCNNGG	1 cut(s)	261
BseLI	CCNNNNNNNGG	2 cut(s)	26, 332
BseNI	ACTGG	1 cut(s)	421
BseXI	GCAGC	1 cut(s)	29
BsgI	GTGCAG	1 cut(s)	312
BshFI	GGCC	1 cut(s)	150
BsiHKAI	GWGCWC	1 cut(s)	471
BsiHKCI	CYCGRG	1 cut(s)	125
BslFI	GGGAC	1 cut(s)	308
BslI	CCNNNNNNNGG	2 cut(s)	26, 332
BsmAI	GTCTC	1 cut(s)	35
BsmFI	GGGAC	1 cut(s)	308
BsnI	GGCC	1 cut(s)	150
Bso31I	GGTCTC	1 cut(s)	35
BsoBI	CYCGRG	1 cut(s)	125
Bsp1286I	GDGCHC	1 cut(s)	471
Bsp143I	GATC	3 cut(s)	129, 361, 432
Bsp1720I	GCTNAGC	1 cut(s)	203
BspANI	GGCC	1 cut(s)	150
BspHI	TCATGA	2 cut(s)	84, 477
BspLI	GGNNCC	1 cut(s)	303
BspPI	GGATC	1 cut(s)	369
BspTNI	GGTCTC	1 cut(s)	35
BsrI	ACTGG	1 cut(s)	421
BssECI	CCNNGG	1 cut(s)	261
BssMI	GATC	3 cut(s)	129, 361, 432
BssSI	CACGAG	1 cut(s)	330
Bst2BI	CACGAG	1 cut(s)	330
Bst4CI	ACNGT	3 cut(s)	106, 289, 466
BstC8I	GCNNGC	3 cut(s)	209, 315, 536
BstDEI	CTNAG	3 cut(s)	64, 203, 549
BstDSI	CCRYGG	1 cut(s)	261
BstENI	CCTNNNNNAGG	1 cut(s)	330
BstH2I	RGCGCY	1 cut(s)	492
BstHHI	GCGC	1 cut(s)	491
BstKTI	GATC	3 cut(s)	132, 364, 435
BstMAI	GTCTC	1 cut(s)	35
BstMBI	GATC	3 cut(s)	129, 361, 432
BstMWI	GCNNNNNNNGC	1 cut(s)	208
BstNSI	RCATGY	3 cut(s)	211, 317, 510
BstSFI	CTRYAG	1 cut(s)	492
BstV1I	GCAGC	1 cut(s)	29
BstX2I	RGATCY	1 cut(s)	361
BstXI	CCANNNNNNTGG	1 cut(s)	358
BstYI	RGATCY	1 cut(s)	361
BsuRI	GGCC	1 cut(s)	150
BtgI	CCRYGG	1 cut(s)	261
Cac8I	GCNNGC	3 cut(s)	209, 315, 536
CciI	TCATGA	2 cut(s)	84, 477
CfoI	GCGC	1 cut(s)	491
CseI	GACGC	1 cut(s)	208
CviAII	CATG	7 cut(s)	85, 208, 314, 400, 452, 478, 507
CviJI	RGCY	4 cut(s)	115, 150, 297, 497
CviKI_1	RGCY	4 cut(s)	115, 150, 297, 497
DdeI	CTNAG	3 cut(s)	64, 203, 549
DpnI	GATC	3 cut(s)	131, 363, 434
DpnII	GATC	3 cut(s)	129, 361, 432
Eco31I	GGTCTC	1 cut(s)	35
Eco88I	CYCGRG	1 cut(s)	125
EcoNI	CCTNNNNNAGG	1 cut(s)	330
FaeI	CATG	7 cut(s)	88, 211, 317, 403, 455, 481, 510
FaqI	GGGAC	1 cut(s)	308
FatI	CATG	7 cut(s)	84, 207, 313, 399, 451, 477, 506
FauNDI	CATATG	1 cut(s)	268
Fnu4HI	GCNGC	1 cut(s)	43
Fsp4HI	GCNGC	1 cut(s)	43
FspBI	CTAG	1 cut(s)	6
GlaI	GCGC	1 cut(s)	490
GluI	GCNGC	1 cut(s)	43
HaeII	RGCGCY	1 cut(s)	492
HaeIII	GGCC	1 cut(s)	150
HgaI	GACGC	1 cut(s)	208
HhaI	GCGC	1 cut(s)	491
Hin1II	CATG	7 cut(s)	88, 211, 317, 403, 455, 481, 510
Hin6I	GCGC	1 cut(s)	489
HinP1I	GCGC	1 cut(s)	489
HinfI	GANTC	1 cut(s)	545
HphI	GGTGA	1 cut(s)	94
Hpy188I	TCNGA	3 cut(s)	21, 180, 306
Hpy188III	TCNNGA	6 cut(s)	85, 217, 253, 281, 436, 478
Hpy99I	CGWCG	1 cut(s)	83
HpyCH4III	ACNGT	3 cut(s)	106, 289, 466
HpyCH4V	TGCA	2 cut(s)	329, 555
HpyF10VI	GCNNNNNNNGC	1 cut(s)	208
HpyF3I	CTNAG	3 cut(s)	64, 203, 549
Hsp92II	CATG	7 cut(s)	88, 211, 317, 403, 455, 481, 510
HspAI	GCGC	1 cut(s)	489
Kzo9I	GATC	3 cut(s)	129, 361, 432
LmnI	GCTCC	1 cut(s)	310
LpnPI	CCDG	3 cut(s)	25, 339, 402
Lsp1109I	GCAGC	1 cut(s)	29
MaeI	CTAG	1 cut(s)	6
MaeIII	GTNAC	6 cut(s)	49, 184, 196, 214, 271, 460
MalI	GATC	3 cut(s)	131, 363, 434
MboI	GATC	3 cut(s)	129, 361, 432
MboII	GAAGA	1 cut(s)	416
MflI	RGATCY	1 cut(s)	361
MhlI	GDGCHC	1 cut(s)	471
MluCI	AATT	3 cut(s)	232, 427, 540
MnlI	CCTC	5 cut(s)	20, 86, 326, 364, 402
MroXI	GAANNNNTTC	1 cut(s)	159
MslI	CAYNNNNRTG	1 cut(s)	356
MwoI	GCNNNNNNNGC	1 cut(s)	208
NdeI	CATATG	1 cut(s)	268
NdeII	GATC	3 cut(s)	129, 361, 432
NlaIII	CATG	7 cut(s)	88, 211, 317, 403, 455, 481, 510
NlaIV	GGNNCC	1 cut(s)	303
NmuCI	GTSAC	4 cut(s)	184, 196, 214, 460
NspI	RCATGY	3 cut(s)	211, 317, 510
OliI	CACNNNNGTG	1 cut(s)	356
PaeI	GCATGC	2 cut(s)	211, 317
PagI	TCATGA	2 cut(s)	84, 477
PdmI	GAANNNNTTC	1 cut(s)	159
PfeI	GAWTC	1 cut(s)	545
PkrI	GCNGC	1 cut(s)	44
PspN4I	GGNNCC	1 cut(s)	303
PsrI	GAACNNNNNNTAC	2 cut(s)	285, 317
PsuI	RGATCY	1 cut(s)	361
RseI	CAYNNNNRTG	1 cut(s)	356
SatI	GCNGC	1 cut(s)	43
Sau3AI	GATC	3 cut(s)	129, 361, 432
SduI	GDGCHC	1 cut(s)	471
SetI	ASST	3 cut(s)	31, 356, 499
SfcI	CTRYAG	1 cut(s)	492
SmiMI	CAYNNNNRTG	1 cut(s)	356
SmlI	CTYRAG	1 cut(s)	470
SmoI	CTYRAG	1 cut(s)	470
SpeI	ACTAGT	1 cut(s)	5
SphI	GCATGC	2 cut(s)	211, 317
Sse9I	AATT	3 cut(s)	232, 427, 540
SspMI	CTAG	1 cut(s)	6
TaaI	ACNGT	3 cut(s)	106, 289, 466
TaqI	TCGA	1 cut(s)	437
TasI	AATT	3 cut(s)	232, 427, 540
TfiI	GAWTC	1 cut(s)	545
TseFI	GTSAC	4 cut(s)	184, 196, 214, 460
TseI	GCWGC	1 cut(s)	42
Tsp45I	GTSAC	4 cut(s)	184, 196, 214, 460
TspDTI	ATGAA	3 cut(s)	388, 466, 494
XagI	CCTNNNNNAGG	1 cut(s)	330
XceI	RCATGY	3 cut(s)	211, 317, 510
XmnI	GAANNNNTTC	1 cut(s)	159
XspI	CTAG	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.