Rroxscaffold_2G00093190

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0017435
Physical Location & Seq
Reverse (-)
14621170 .. 14631033
9864 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00093190.1

Sequence Viewer

Length: 678 bp
ATGAATGATGATGAGTTAGATTGGATGGAGAAGAGAGGTGGGTCCATGACAGGAGGAAAGGGGGAAGGGATTGAATTAAATTTGGTTCTGAAATGTGAAGAAGTGCAGAGAAGAGAGAGAGCAGTGGTGATGGCCGGGGTTGTACCTGCCGGAGATATCGTGCTAGGGAATACATTAGCTTCTTCTCCTCTCGGAGACTGTGTACGTAGTCTTCTTTTTGGAATGCTAAAATACCTGGAAAGGTTTCTAACTATTTGCATTTGGCGTGCTTGTCACAATGTTCTACCTTCAAGGGAGAGCTTGAGTAAGAGGGGCAAAACAAAACAACAGTGCTTAGGTGATGGAGGAAATCGTTTAGGTTTCGACGGCCGCCTAGGCGGGCTCGGCTTGGGTTCATCAAGAGTTCTTTTTGAAGCCTACAGTGAGGCTGTTTCTCAAAACAATGAACCTTGGTCTCTTATCGGAGATTTCAGTAATATTTGCGAACTGAGGAGAAAATTCGGGGTTAGGCCATGTTTGTTTCCCGGAAAGTGGGTGTTGGGAAAGGAAATACTTTCCTTTCCTGCGTTTGGGGACAGCCAAGGAAGGGAAACACTTTCCCAAAGCAAAGGAAAAAGTGGAGGAATTTGGTTCCCTCCCCCCCCTCCGGAAACACTTTCCCAAAGGAAAGGAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

225

Amino Acids

24.64

Weight (kDa)

9.01

Isoelectric Point (pI)

57.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 154
AccIII TCCGGA 1 cut(s) 646
AciI CCGC 2 cut(s) 370, 378
AcoI YGGCCR 2 cut(s) 132, 367
AcsI RAATTY 3 cut(s) 79, 497, 624
AfaI GTAC 2 cut(s) 144, 204
AfiI CCNNNNNNNGG 4 cut(s) 531, 569, 586, 646
AgsI TTSAA 3 cut(s) 74, 291, 413
AjnI CCWGG 1 cut(s) 234
AluBI AGCT 2 cut(s) 179, 300
AluI AGCT 2 cut(s) 179, 300
Alw26I GTCTC 2 cut(s) 189, 459
Aor13HI TCCGGA 1 cut(s) 646
AoxI GGCC 3 cut(s) 132, 367, 509
ApoI RAATTY 3 cut(s) 79, 497, 624
Asp700I GAANNNNTTC 1 cut(s) 243
AspA2I CCTAGG 1 cut(s) 373
AspS9I GGNCC 1 cut(s) 42
AsuC2I CCSGG 2 cut(s) 136, 525
AsuHPI GGTGA 2 cut(s) 139, 350
AvaII GGWCC 1 cut(s) 42
AvrII CCTAGG 1 cut(s) 373
BanII GRGCYC 1 cut(s) 384
BarI GAAGNNNNNNTAC 2 cut(s) 195, 227
BbsI GAAGAC 1 cut(s) 203
BccI CCATC 3 cut(s) 19, 124, 335
BceAI ACGGC 1 cut(s) 382
BciT130I CCWGG 1 cut(s) 236
BcnI CCSGG 2 cut(s) 136, 525
BcoDI GTCTC 2 cut(s) 189, 459
BfaI CTAG 2 cut(s) 164, 374
BfmI CTRYAG 1 cut(s) 418
BfuAI ACCTGC 1 cut(s) 154
BglI GCCNNNNNGGC 1 cut(s) 375
BisI GCNGC 1 cut(s) 370
BlnI CCTAGG 1 cut(s) 373
BlsI GCNGC 1 cut(s) 371
Bme1390I CCNGG 3 cut(s) 136, 236, 525
Bme18I GGWCC 1 cut(s) 42
BmgT120I GGNCC 1 cut(s) 42
BmiI GGNNCC 2 cut(s) 43, 632
BmrFI CCNGG 3 cut(s) 136, 236, 525
BpiI GAAGAC 1 cut(s) 203
Bpu10I CCTNAGC 1 cut(s) 334
BpuEI CTTGAG 1 cut(s) 322
BpuMI CCSGG 2 cut(s) 136, 525
BsaAI YACGTR 1 cut(s) 206
BsaI GGTCTC 1 cut(s) 459
BsaJI CCNNGG 4 cut(s) 135, 373, 449, 580
BsaWI WCCGGW 1 cut(s) 646
BsaXI ACNNNNNCTCC 4 cut(s) 144, 174, 186, 216
Bsc4I CCNNNNNNNGG 4 cut(s) 531, 569, 586, 646
BseAI TCCGGA 1 cut(s) 646
BseBI CCWGG 1 cut(s) 236
BseDI CCNNGG 4 cut(s) 135, 373, 449, 580
BseGI GGATG 1 cut(s) 30
BseLI CCNNNNNNNGG 4 cut(s) 531, 569, 586, 646
BseMII CTCAG 1 cut(s) 479
BseRI GAGGAG 2 cut(s) 177, 505
BseX3I CGGCCG 1 cut(s) 367
BsgI GTGCAG 1 cut(s) 125
Bsh1285I CGRYCG 1 cut(s) 370
BshFI GGCC 3 cut(s) 134, 369, 511
BsiEI CGRYCG 1 cut(s) 370
BsiSI CCGG 4 cut(s) 135, 150, 525, 647
BslFI GGGAC 1 cut(s) 587
BslI CCNNNNNNNGG 4 cut(s) 531, 569, 586, 646
BsmAI GTCTC 2 cut(s) 189, 459
BsmFI GGGAC 1 cut(s) 587
BsmI GAATGC 1 cut(s) 228
BsnI GGCC 3 cut(s) 134, 369, 511
Bso31I GGTCTC 1 cut(s) 459
Bsp1286I GDGCHC 1 cut(s) 384
Bsp13I TCCGGA 1 cut(s) 646
BspACI CCGC 2 cut(s) 370, 378
BspANI GGCC 3 cut(s) 134, 369, 511
BspCNI CTCAG 1 cut(s) 480
BspEI TCCGGA 1 cut(s) 646
BspLI GGNNCC 2 cut(s) 43, 632
BspMI ACCTGC 1 cut(s) 154
BspTNI GGTCTC 1 cut(s) 459
BssECI CCNNGG 4 cut(s) 135, 373, 449, 580
BssT1I CCWWGG 3 cut(s) 373, 449, 580
Bst2UI CCWGG 1 cut(s) 236
Bst4CI ACNGT 3 cut(s) 200, 330, 422
Bst6I CTCTTC 2 cut(s) 26, 106
BstBAI YACGTR 1 cut(s) 206
BstC8I GCNNGC 2 cut(s) 267, 380
BstDEI CTNAG 2 cut(s) 334, 488
BstF5I GGATG 1 cut(s) 30
BstMAI GTCTC 2 cut(s) 189, 459
BstMCI CGRYCG 1 cut(s) 370
BstMWI GCNNNNNNNGC 2 cut(s) 375, 384
BstNI CCWGG 1 cut(s) 236
BstSCI CCNGG 3 cut(s) 134, 234, 523
BstSFI CTRYAG 1 cut(s) 418
BstSNI TACGTA 1 cut(s) 206
BstV2I GAAGAC 1 cut(s) 203
BstZI CGGCCG 1 cut(s) 367
BsuRI GGCC 3 cut(s) 134, 369, 511
BtsCI GGATG 1 cut(s) 30
BtsI GCAGTG 1 cut(s) 129
BtsIMutI CAGTG 3 cut(s) 129, 335, 427
BveI ACCTGC 1 cut(s) 154
Cac8I GCNNGC 2 cut(s) 267, 380
Cfr13I GGNCC 1 cut(s) 42
Csp6I GTAC 2 cut(s) 143, 203
CviAII CATG 2 cut(s) 46, 513
CviQI GTAC 2 cut(s) 143, 203
DdeI CTNAG 2 cut(s) 334, 488
EaeI YGGCCR 2 cut(s) 132, 367
EagI CGGCCG 1 cut(s) 367
Eam1104I CTCTTC 2 cut(s) 26, 106
EarI CTCTTC 2 cut(s) 26, 106
EclXI CGGCCG 1 cut(s) 367
Eco105I TACGTA 1 cut(s) 206
Eco130I CCWWGG 3 cut(s) 373, 449, 580
Eco24I GRGCYC 1 cut(s) 384
Eco31I GGTCTC 1 cut(s) 459
Eco32I GATATC 1 cut(s) 157
Eco47I GGWCC 1 cut(s) 42
Eco52I CGGCCG 1 cut(s) 367
EcoRII CCWGG 1 cut(s) 234
EcoRV GATATC 1 cut(s) 157
EcoT14I CCWWGG 3 cut(s) 373, 449, 580
EcoT38I GRGCYC 1 cut(s) 384
ErhI CCWWGG 3 cut(s) 373, 449, 580
FaeI CATG 2 cut(s) 49, 516
FaiI YATR 2 cut(s) 47, 514
FaqI GGGAC 1 cut(s) 587
FatI CATG 2 cut(s) 45, 512
FauI CCCGC 1 cut(s) 371
Fnu4HI GCNGC 1 cut(s) 370
FokI GGATG 1 cut(s) 37
FriOI GRGCYC 1 cut(s) 384
Fsp4HI GCNGC 1 cut(s) 370
FspBI CTAG 2 cut(s) 164, 374
GluI GCNGC 1 cut(s) 370
HaeIII GGCC 3 cut(s) 134, 369, 511
HapII CCGG 4 cut(s) 135, 150, 525, 647
Hin1II CATG 2 cut(s) 49, 516
HpaII CCGG 4 cut(s) 135, 150, 525, 647
HphI GGTGA 2 cut(s) 139, 350
Hpy166II GTNNAC 1 cut(s) 203
Hpy188I TCNGA 3 cut(s) 90, 194, 464
Hpy188III TCNNGA 2 cut(s) 399, 647
Hpy8I GTNNAC 1 cut(s) 203
Hpy99I CGWCG 1 cut(s) 368
HpyAV CCTTC 3 cut(s) 59, 297, 579
HpyCH4III ACNGT 3 cut(s) 200, 330, 422
HpyCH4IV ACGT 1 cut(s) 205
HpyCH4V TGCA 2 cut(s) 106, 258
HpyF10VI GCNNNNNNNGC 2 cut(s) 375, 384
HpyF3I CTNAG 2 cut(s) 334, 488
HpySE526I ACGT 1 cut(s) 205
Hsp92II CATG 2 cut(s) 49, 516
Kpn2I TCCGGA 1 cut(s) 646
LpnPI CCDG 9 cut(s) 36, 148, 159, 163, 221, 248, 538, 576, 660
MaeI CTAG 2 cut(s) 164, 374
MaeII ACGT 1 cut(s) 205
MaeIII GTNAC 1 cut(s) 272
MboII GAAGA 5 cut(s) 43, 110, 123, 174, 203
MhlI GDGCHC 1 cut(s) 384
MluCI AATT 4 cut(s) 74, 79, 497, 624
MroI TCCGGA 1 cut(s) 646
MroXI GAANNNNTTC 1 cut(s) 243
MseI TTAA 1 cut(s) 77
MspI CCGG 4 cut(s) 135, 150, 525, 647
MspR9I CCNGG 3 cut(s) 136, 236, 525
Mva1269I GAATGC 1 cut(s) 228
MvaI CCWGG 1 cut(s) 236
MwoI GCNNNNNNNGC 2 cut(s) 375, 384
NciI CCSGG 2 cut(s) 136, 525
NlaIII CATG 2 cut(s) 49, 516
NlaIV GGNNCC 2 cut(s) 43, 632
NmeAIII GCCGAG 1 cut(s) 363
NmuCI GTSAC 1 cut(s) 272
PctI GAATGC 1 cut(s) 228
PdmI GAANNNNTTC 1 cut(s) 243
PfoI TCCNGGA 1 cut(s) 523
PkrI GCNGC 1 cut(s) 371
Ppu21I YACGTR 1 cut(s) 206
Psp6I CCWGG 1 cut(s) 234
PspGI CCWGG 1 cut(s) 234
PspN4I GGNNCC 2 cut(s) 43, 632
PspPI GGNCC 1 cut(s) 42
RsaI GTAC 2 cut(s) 144, 204
RsaNI GTAC 2 cut(s) 143, 203
SaqAI TTAA 1 cut(s) 77
SatI GCNGC 1 cut(s) 370
Sau96I GGNCC 1 cut(s) 42
ScrFI CCNGG 3 cut(s) 136, 236, 525
SduI GDGCHC 1 cut(s) 384
SfcI CTRYAG 1 cut(s) 418
SinI GGWCC 1 cut(s) 42
SmlI CTYRAG 1 cut(s) 301
SmoI CTYRAG 1 cut(s) 301
SnaBI TACGTA 1 cut(s) 206
Sse9I AATT 4 cut(s) 74, 79, 497, 624
SsiI CCGC 2 cut(s) 370, 378
SspI AATATT 1 cut(s) 478
SspMI CTAG 2 cut(s) 164, 374
StyD4I CCNGG 3 cut(s) 134, 234, 523
StyI CCWWGG 3 cut(s) 373, 449, 580
TaaI ACNGT 3 cut(s) 200, 330, 422
TaiI ACGT 1 cut(s) 208
TaqI TCGA 1 cut(s) 363
TasI AATT 4 cut(s) 74, 79, 497, 624
TauI GCSGC 1 cut(s) 372
Tru1I TTAA 1 cut(s) 77
Tru9I TTAA 1 cut(s) 77
TscAI CASTG 3 cut(s) 129, 335, 427
TseFI GTSAC 1 cut(s) 272
Tsp45I GTSAC 1 cut(s) 272
TspDTI ATGAA 3 cut(s) 17, 384, 459
TspRI CASTG 3 cut(s) 129, 335, 427
VpaK11BI GGWCC 1 cut(s) 42
XapI RAATTY 3 cut(s) 79, 497, 624
XmaJI CCTAGG 1 cut(s) 373
XmnI GAANNNNTTC 1 cut(s) 243
XspI CTAG 2 cut(s) 164, 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.