Rh4DG421800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0017435
Physical Location & Seq
Reverse (-)
62928111 .. 62930814
2704 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG421800.1

Sequence Viewer

Length: 387 bp
ATGAATCTGAAAATGGTCCTCACTTTGAGACATGGAACTTGGGAGTATTGGGACCAGTTGTTTGATTCTACAAGGATTAGATCAAGAAAACAGAGATCTATCAGGGCAAAAATGGTCACACAAGCTTTTGGGACCAAGAGAGTAGAAAAGCAGAACTTGTGGTTGCAGTTATGGAGACAAACAAGATGCAGGATTAACAGACTCTGCGTGTTGTCTTTCTTTAATAAGGTTAGAGTATCTGGTATCCCAGATTATCTCCAATTTCTTGGATGTGATTGCAGATATCTTGGAGATGACATAGAAGTGGCCAATGAAATAAGAATCAAAGATGAGAGTGCGCCACCGCTTGGACATACACTGGCTTTGGAGAACAAATTTATCGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

15.18

Weight (kDa)

9.83

Isoelectric Point (pI)

49.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 347
AciI CCGC 1 cut(s) 344
AcoI YGGCCR 1 cut(s) 306
AcsI RAATTY 1 cut(s) 374
AfiI CCNNNNNNNGG 1 cut(s) 347
AluBI AGCT 1 cut(s) 125
AluI AGCT 1 cut(s) 125
Alw26I GTCTC 2 cut(s) 22, 169
AlwNI CAGNNNCTG 1 cut(s) 204
AoxI GGCC 1 cut(s) 306
ApoI RAATTY 1 cut(s) 374
ArsI GACNNNNNNTTYG 2 cut(s) 44, 76
AspLEI GCGC 1 cut(s) 340
AspS9I GGNCC 3 cut(s) 16, 52, 132
AvaII GGWCC 3 cut(s) 16, 52, 132
BalI TGGCCA 1 cut(s) 308
BciVI GTATCC 1 cut(s) 254
BcoDI GTCTC 2 cut(s) 22, 169
BfuI GTATCC 1 cut(s) 254
BglII AGATCT 1 cut(s) 95
Bme18I GGWCC 3 cut(s) 16, 52, 132
BmgT120I GGNCC 3 cut(s) 16, 52, 132
BmiI GGNNCC 2 cut(s) 53, 133
BmsI GCATC 1 cut(s) 176
Bsc4I CCNNNNNNNGG 1 cut(s) 347
Bse1I ACTGG 2 cut(s) 55, 363
BseGI GGATG 1 cut(s) 275
BseLI CCNNNNNNNGG 1 cut(s) 347
BseNI ACTGG 2 cut(s) 55, 363
BshFI GGCC 1 cut(s) 308
BslFI GGGAC 2 cut(s) 65, 145
BslI CCNNNNNNNGG 1 cut(s) 347
BsmAI GTCTC 2 cut(s) 22, 169
BsmFI GGGAC 2 cut(s) 65, 145
BsnI GGCC 1 cut(s) 308
Bsp143I GATC 2 cut(s) 80, 95
BspACI CCGC 1 cut(s) 344
BspANI GGCC 1 cut(s) 308
BspLI GGNNCC 2 cut(s) 53, 133
BsrI ACTGG 2 cut(s) 55, 363
BssMI GATC 2 cut(s) 80, 95
BstF5I GGATG 1 cut(s) 275
BstHHI GCGC 1 cut(s) 340
BstKTI GATC 2 cut(s) 83, 98
BstMAI GTCTC 2 cut(s) 22, 169
BstMBI GATC 2 cut(s) 80, 95
BstX2I RGATCY 1 cut(s) 95
BstXI CCANNNNNNTGG 1 cut(s) 266
BstYI RGATCY 1 cut(s) 95
BsuI GTATCC 1 cut(s) 254
BsuRI GGCC 1 cut(s) 308
BtsCI GGATG 1 cut(s) 275
BtsIMutI CAGTG 1 cut(s) 356
CaiI CAGNNNCTG 1 cut(s) 204
CfoI GCGC 1 cut(s) 340
Cfr13I GGNCC 3 cut(s) 16, 52, 132
CviAII CATG 2 cut(s) 32, 384
CviJI RGCY 3 cut(s) 125, 308, 362
CviKI_1 RGCY 3 cut(s) 125, 308, 362
DpnI GATC 2 cut(s) 82, 97
DpnII GATC 2 cut(s) 80, 95
EaeI YGGCCR 1 cut(s) 306
Eco32I GATATC 1 cut(s) 284
Eco47I GGWCC 3 cut(s) 16, 52, 132
EcoRV GATATC 1 cut(s) 284
FaeI CATG 2 cut(s) 35, 387
FaiI YATR 5 cut(s) 33, 172, 299, 354, 385
FalI AAGNNNNNCTT 2 cut(s) 140, 172
FaqI GGGAC 2 cut(s) 65, 145
FatI CATG 2 cut(s) 31, 383
FokI GGATG 1 cut(s) 282
GlaI GCGC 1 cut(s) 339
HaeIII GGCC 1 cut(s) 308
HhaI GCGC 1 cut(s) 340
Hin1II CATG 2 cut(s) 35, 387
Hin6I GCGC 1 cut(s) 338
HinP1I GCGC 1 cut(s) 338
HindIII AAGCTT 1 cut(s) 123
HinfI GANTC 4 cut(s) 4, 65, 201, 321
Hpy188I TCNGA 1 cut(s) 9
Hpy188III TCNNGA 1 cut(s) 84
HpyCH4V TGCA 3 cut(s) 166, 189, 279
Hsp92II CATG 2 cut(s) 35, 387
HspAI GCGC 1 cut(s) 338
Kzo9I GATC 2 cut(s) 80, 95
LpnPI CCDG 6 cut(s) 68, 88, 175, 225, 261, 344
LweI GCATC 1 cut(s) 176
MaeIII GTNAC 1 cut(s) 115
MalI GATC 2 cut(s) 82, 97
MboI GATC 2 cut(s) 80, 95
MflI RGATCY 1 cut(s) 95
MlsI TGGCCA 1 cut(s) 308
MluCI AATT 2 cut(s) 260, 374
MluNI TGGCCA 1 cut(s) 308
MlyI GAGTC 1 cut(s) 195
MnlI CCTC 1 cut(s) 29
Mox20I TGGCCA 1 cut(s) 308
MscI TGGCCA 1 cut(s) 308
MseI TTAA 2 cut(s) 195, 222
MslI CAYNNNNRTG 1 cut(s) 302
Msp20I TGGCCA 1 cut(s) 308
NdeII GATC 2 cut(s) 80, 95
NlaIII CATG 2 cut(s) 35, 387
NlaIV GGNNCC 2 cut(s) 53, 133
NmuCI GTSAC 1 cut(s) 115
PfeI GAWTC 3 cut(s) 4, 65, 321
PflMI CCANNNNNTGG 1 cut(s) 347
PleI GAGTC 1 cut(s) 195
PpsI GAGTC 1 cut(s) 195
PspN4I GGNNCC 2 cut(s) 53, 133
PspPI GGNCC 3 cut(s) 16, 52, 132
PstNI CAGNNNCTG 1 cut(s) 204
PsuI RGATCY 1 cut(s) 95
RseI CAYNNNNRTG 1 cut(s) 302
SaqAI TTAA 2 cut(s) 195, 222
Sau3AI GATC 2 cut(s) 80, 95
Sau96I GGNCC 3 cut(s) 16, 52, 132
SchI GAGTC 1 cut(s) 195
SetI ASST 2 cut(s) 127, 231
SfaNI GCATC 1 cut(s) 176
SinI GGWCC 3 cut(s) 16, 52, 132
SmiMI CAYNNNNRTG 1 cut(s) 302
Sse9I AATT 2 cut(s) 260, 374
SsiI CCGC 1 cut(s) 344
TasI AATT 2 cut(s) 260, 374
TfiI GAWTC 3 cut(s) 4, 65, 321
Tru1I TTAA 2 cut(s) 195, 222
Tru9I TTAA 2 cut(s) 195, 222
TscAI CASTG 1 cut(s) 363
TseFI GTSAC 1 cut(s) 115
Tsp45I GTSAC 1 cut(s) 115
TspDTI ATGAA 2 cut(s) 17, 327
TspRI CASTG 1 cut(s) 363
Van91I CCANNNNNTGG 1 cut(s) 347
VpaK11BI GGWCC 3 cut(s) 16, 52, 132
XapI RAATTY 1 cut(s) 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.