Rh1DG120800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0017435
Physical Location & Seq
Forward (+)
22080391 .. 22090454
10064 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG120800.1

Sequence Viewer

Length: 318 bp
ATGCCTTCTTTTTCTTCTCTGGTTGCCCCCGGCGCGGCCTCCATCGCTCGGCTTCAACAATGGCGAGCTTCTGTCCTCCGTGGTCTGGAACGCTGCAACACAAACCTTGTGGGCAAGGGATCTGTTTCTAACAATGTTGTATTAACCCATCATCAGATTCTCTTTAGCTTAACCTATGGAACACCTTCAGAAGGTAGATTCTTTTCTCTTGTTAGAGTATCTGGTATCCTAGAGTATCTCCTATTTCTTGGATGTGATTGTAGACATCATGGAAATGACTTAGGGTCACCTTTTTCTTTTCCTGGCTACAACCCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.44

Weight (kDa)

9.06

Isoelectric Point (pI)

33.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 262
AccII CGCG 1 cut(s) 35
AciI CCGC 1 cut(s) 35
AclWI GGATC 1 cut(s) 127
AcuI CTGAAG 1 cut(s) 171
AfiI CCNNNNNNNGG 4 cut(s) 34, 48, 85, 191
AgsI TTSAA 1 cut(s) 56
AhdI GACNNNNNGTC 1 cut(s) 283
AjnI CCWGG 1 cut(s) 301
AluBI AGCT 2 cut(s) 68, 168
AluI AGCT 2 cut(s) 68, 168
AlwI GGATC 1 cut(s) 127
AoxI GGCC 1 cut(s) 36
ApeKI GCWGC 1 cut(s) 93
Asp700I GAANNNNTTC 1 cut(s) 184
AspLEI GCGC 1 cut(s) 35
AsuC2I CCSGG 1 cut(s) 30
AsuHPI GGTGA 1 cut(s) 279
BbvI GCAGC 1 cut(s) 80
BccI CCATC 2 cut(s) 50, 156
BciT130I CCWGG 1 cut(s) 303
BciVI GTATCC 1 cut(s) 236
BcnI CCSGG 1 cut(s) 30
BfaI CTAG 1 cut(s) 230
BfuI GTATCC 1 cut(s) 236
BisI GCNGC 2 cut(s) 36, 94
BlsI GCNGC 2 cut(s) 37, 95
Bme1390I CCNGG 2 cut(s) 30, 303
BmeRI GACNNNNNGTC 1 cut(s) 283
BmrFI CCNGG 2 cut(s) 30, 303
BpuMI CCSGG 1 cut(s) 30
BsaJI CCNNGG 2 cut(s) 28, 79
Bsc4I CCNNNNNNNGG 4 cut(s) 34, 48, 85, 191
BseBI CCWGG 1 cut(s) 303
BseDI CCNNGG 2 cut(s) 28, 79
BseGI GGATG 1 cut(s) 257
BseLI CCNNNNNNNGG 4 cut(s) 34, 48, 85, 191
BseXI GCAGC 1 cut(s) 80
Bsh1236I CGCG 1 cut(s) 35
BshFI GGCC 1 cut(s) 38
BsiSI CCGG 1 cut(s) 30
BslI CCNNNNNNNGG 4 cut(s) 34, 48, 85, 191
BsnI GGCC 1 cut(s) 38
Bsp143I GATC 1 cut(s) 119
BspACI CCGC 1 cut(s) 35
BspANI GGCC 1 cut(s) 38
BspFNI CGCG 1 cut(s) 35
BspPI GGATC 1 cut(s) 127
BssECI CCNNGG 2 cut(s) 28, 79
BssMI GATC 1 cut(s) 119
Bst2UI CCWGG 1 cut(s) 303
BstC8I GCNNGC 1 cut(s) 66
BstDEI CTNAG 1 cut(s) 280
BstDSI CCRYGG 1 cut(s) 79
BstEII GGTNACC 1 cut(s) 285
BstENI CCTNNNNNAGG 1 cut(s) 189
BstF5I GGATG 1 cut(s) 257
BstFNI CGCG 1 cut(s) 35
BstHHI GCGC 1 cut(s) 35
BstKTI GATC 1 cut(s) 122
BstMBI GATC 1 cut(s) 119
BstMWI GCNNNNNNNGC 2 cut(s) 32, 44
BstNI CCWGG 1 cut(s) 303
BstPI GGTNACC 1 cut(s) 285
BstSCI CCNGG 2 cut(s) 28, 301
BstUI CGCG 1 cut(s) 35
BstV1I GCAGC 1 cut(s) 80
BstX2I RGATCY 1 cut(s) 119
BstYI RGATCY 1 cut(s) 119
BsuI GTATCC 1 cut(s) 236
BsuRI GGCC 1 cut(s) 38
BtgI CCRYGG 1 cut(s) 79
BtgZI GCGATG 1 cut(s) 28
BtsCI GGATG 1 cut(s) 257
Cac8I GCNNGC 1 cut(s) 66
CfoI GCGC 1 cut(s) 35
CspCI CAANNNNNGTGG 2 cut(s) 90, 125
CviAII CATG 1 cut(s) 269
CviJI RGCY 5 cut(s) 38, 52, 68, 168, 306
CviKI_1 RGCY 5 cut(s) 38, 52, 68, 168, 306
DdeI CTNAG 1 cut(s) 280
DpnI GATC 1 cut(s) 121
DpnII GATC 1 cut(s) 119
DriI GACNNNNNGTC 1 cut(s) 283
Eam1105I GACNNNNNGTC 1 cut(s) 283
Eco57I CTGAAG 1 cut(s) 171
Eco91I GGTNACC 1 cut(s) 285
EcoNI CCTNNNNNAGG 1 cut(s) 189
EcoO65I GGTNACC 1 cut(s) 285
EcoRII CCWGG 1 cut(s) 301
FaeI CATG 1 cut(s) 272
FaiI YATR 2 cut(s) 177, 270
FatI CATG 1 cut(s) 268
FblI GTMKAC 1 cut(s) 262
Fnu4HI GCNGC 2 cut(s) 36, 94
FokI GGATG 1 cut(s) 264
Fsp4HI GCNGC 2 cut(s) 36, 94
FspBI CTAG 1 cut(s) 230
GlaI GCGC 1 cut(s) 34
GluI GCNGC 2 cut(s) 36, 94
HaeIII GGCC 1 cut(s) 38
HapII CCGG 1 cut(s) 30
HhaI GCGC 1 cut(s) 35
Hin1II CATG 1 cut(s) 272
Hin6I GCGC 1 cut(s) 33
HinP1I GCGC 1 cut(s) 33
HinfI GANTC 2 cut(s) 157, 198
HpaII CCGG 1 cut(s) 30
HphI GGTGA 1 cut(s) 279
Hpy166II GTNNAC 1 cut(s) 263
Hpy188I TCNGA 2 cut(s) 156, 190
Hpy188III TCNNGA 1 cut(s) 86
Hpy8I GTNNAC 1 cut(s) 263
HpyAV CCTTC 3 cut(s) 15, 185, 195
HpyCH4V TGCA 1 cut(s) 96
HpyF10VI GCNNNNNNNGC 2 cut(s) 32, 44
HpyF3I CTNAG 1 cut(s) 280
Hsp92II CATG 1 cut(s) 272
HspAI GCGC 1 cut(s) 33
Kzo9I GATC 1 cut(s) 119
LpnPI CCDG 5 cut(s) 5, 43, 71, 207, 288
Lsp1109I GCAGC 1 cut(s) 80
MaeI CTAG 1 cut(s) 230
MaeIII GTNAC 1 cut(s) 285
MalI GATC 1 cut(s) 121
MboI GATC 1 cut(s) 119
MboII GAAGA 1 cut(s) 6
MflI RGATCY 1 cut(s) 119
MnlI CCTC 2 cut(s) 49, 86
MroXI GAANNNNTTC 1 cut(s) 184
MseI TTAA 2 cut(s) 143, 170
MslI CAYNNNNRTG 1 cut(s) 273
MspI CCGG 1 cut(s) 30
MspR9I CCNGG 2 cut(s) 30, 303
MvaI CCWGG 1 cut(s) 303
MvnI CGCG 1 cut(s) 35
MwoI GCNNNNNNNGC 2 cut(s) 32, 44
NciI CCSGG 1 cut(s) 30
NdeII GATC 1 cut(s) 119
NlaIII CATG 1 cut(s) 272
NmeAIII GCCGAG 1 cut(s) 28
NmuCI GTSAC 1 cut(s) 285
PdmI GAANNNNTTC 1 cut(s) 184
PfeI GAWTC 2 cut(s) 157, 198
PkrI GCNGC 2 cut(s) 37, 95
Psp6I CCWGG 1 cut(s) 301
PspEI GGTNACC 1 cut(s) 285
PspGI CCWGG 1 cut(s) 301
PsuI RGATCY 1 cut(s) 119
RseI CAYNNNNRTG 1 cut(s) 273
SaqAI TTAA 2 cut(s) 143, 170
SatI GCNGC 2 cut(s) 36, 94
Sau3AI GATC 1 cut(s) 119
ScrFI CCNGG 2 cut(s) 30, 303
SetI ASST 7 cut(s) 70, 108, 170, 176, 187, 196, 292
SmiMI CAYNNNNRTG 1 cut(s) 273
SsiI CCGC 1 cut(s) 35
SspMI CTAG 1 cut(s) 230
StyD4I CCNGG 2 cut(s) 28, 301
TauI GCSGC 1 cut(s) 38
TfiI GAWTC 2 cut(s) 157, 198
Tru1I TTAA 2 cut(s) 143, 170
Tru9I TTAA 2 cut(s) 143, 170
TseFI GTSAC 1 cut(s) 285
TseI GCWGC 1 cut(s) 93
Tsp45I GTSAC 1 cut(s) 285
TspGWI ACGGA 1 cut(s) 68
XagI CCTNNNNNAGG 1 cut(s) 189
XmiI GTMKAC 1 cut(s) 262
XmnI GAANNNNTTC 1 cut(s) 184
XspI CTAG 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.