Rroxscaffold_5G00386170

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0017435
Physical Location & Seq
Reverse (-)
65131593 .. 65133614
2022 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00386170.1

Sequence Viewer

Length: 462 bp
ATGACCAGCTTCTGTCCTCCGTGGTCTGGAACGCTGCAAGACAAACCTTGTGGGCAAGGTTGTTCTCCCTCCCAAACCCACGCTACTCAAGACGCACGATCTGGCGCTGCAATTGAAGGCGCGTTGGCCTGCCTTGCAGGGATTAACAGACTCTACGAGTTGTCTTTCTTTATTAAGGTTAGAGTATCTGATATCCTAGAGTATCTCCTATTTCTTGGATGTGATTGTAGACATCATGGAAATGACTTAGGTGATGGAAAGCGGGAATTAAATGTTATTGAGAAGGATAAGGATGCATTGATTGAGGACTTTTCTAAGGAGGACAATAATGGCATGGTGGATGGTAGGCAATGCTGGTTAGGACTAACTCTAGAGAGCAGAAGTGAGGCCTCTTCATTGCCAATAATATTTGATTATGACACCTCAAATTTTGCATATGCAAATGCATTGTACTTGAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

153

Amino Acids

16.84

Weight (kDa)

4.65

Isoelectric Point (pI)

49.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 229
AccII CGCG 1 cut(s) 122
AciI CCGC 1 cut(s) 262
AcsI RAATTY 1 cut(s) 427
AfaI GTAC 1 cut(s) 452
AfiI CCNNNNNNNGG 1 cut(s) 26
AgsI TTSAA 1 cut(s) 116
AluBI AGCT 1 cut(s) 9
AluI AGCT 1 cut(s) 9
AlwNI CAGNNNCTG 1 cut(s) 12
AoxI GGCC 2 cut(s) 126, 387
ApeKI GCWGC 2 cut(s) 34, 107
ApoI RAATTY 1 cut(s) 427
AspLEI GCGC 2 cut(s) 107, 122
AsuHPI GGTGA 1 cut(s) 263
BbvI GCAGC 2 cut(s) 21, 94
BccI CCATC 2 cut(s) 248, 335
BfaI CTAG 2 cut(s) 197, 371
BfoI RGCGCY 1 cut(s) 108
BisI GCNGC 2 cut(s) 35, 108
BlsI GCNGC 2 cut(s) 36, 109
BmsI GCATC 1 cut(s) 283
BpuEI CTTGAG 1 cut(s) 72
BsaJI CCNNGG 1 cut(s) 20
Bsc4I CCNNNNNNNGG 1 cut(s) 26
Bse3DI GCAATG 2 cut(s) 356, 395
BseDI CCNNGG 1 cut(s) 20
BseGI GGATG 3 cut(s) 224, 298, 346
BseLI CCNNNNNNNGG 1 cut(s) 26
BseMI GCAATG 2 cut(s) 356, 395
BseXI GCAGC 2 cut(s) 21, 94
Bsh1236I CGCG 1 cut(s) 122
BshFI GGCC 2 cut(s) 128, 389
BslI CCNNNNNNNGG 1 cut(s) 26
BsnI GGCC 2 cut(s) 128, 389
Bsp143I GATC 1 cut(s) 98
BspACI CCGC 1 cut(s) 262
BspANI GGCC 2 cut(s) 128, 389
BspFNI CGCG 1 cut(s) 122
BsrDI GCAATG 2 cut(s) 356, 395
BssECI CCNNGG 1 cut(s) 20
BssMI GATC 1 cut(s) 98
Bst6I CTCTTC 1 cut(s) 397
BstC8I GCNNGC 1 cut(s) 130
BstDEI CTNAG 2 cut(s) 247, 315
BstDSI CCRYGG 1 cut(s) 20
BstF5I GGATG 3 cut(s) 224, 298, 346
BstFNI CGCG 1 cut(s) 122
BstH2I RGCGCY 1 cut(s) 108
BstHHI GCGC 2 cut(s) 107, 122
BstKTI GATC 1 cut(s) 101
BstMBI GATC 1 cut(s) 98
BstMWI GCNNNNNNNGC 1 cut(s) 134
BstUI CGCG 1 cut(s) 122
BstV1I GCAGC 2 cut(s) 21, 94
BsuRI GGCC 2 cut(s) 128, 389
BtgI CCRYGG 1 cut(s) 20
BtsCI GGATG 3 cut(s) 224, 298, 346
Cac8I GCNNGC 1 cut(s) 130
CaiI CAGNNNCTG 1 cut(s) 12
CfoI GCGC 2 cut(s) 107, 122
CseI GACGC 1 cut(s) 101
Csp6I GTAC 1 cut(s) 451
CspCI CAANNNNNGTGG 2 cut(s) 31, 66
CviAII CATG 2 cut(s) 236, 334
CviJI RGCY 3 cut(s) 9, 128, 389
CviKI_1 RGCY 3 cut(s) 9, 128, 389
CviQI GTAC 1 cut(s) 451
DdeI CTNAG 2 cut(s) 247, 315
DpnI GATC 1 cut(s) 100
DpnII GATC 1 cut(s) 98
Eam1104I CTCTTC 1 cut(s) 397
EarI CTCTTC 1 cut(s) 397
Eco147I AGGCCT 1 cut(s) 389
Eco32I GATATC 1 cut(s) 193
EcoRV GATATC 1 cut(s) 193
EcoT22I ATGCAT 2 cut(s) 298, 448
FaeI CATG 2 cut(s) 239, 337
FaiI YATR 5 cut(s) 237, 335, 417, 436, 438
FatI CATG 2 cut(s) 235, 333
FauI CCCGC 1 cut(s) 255
FauNDI CATATG 1 cut(s) 436
FblI GTMKAC 1 cut(s) 229
Fnu4HI GCNGC 2 cut(s) 35, 108
FokI GGATG 3 cut(s) 231, 305, 353
Fsp4HI GCNGC 2 cut(s) 35, 108
FspBI CTAG 2 cut(s) 197, 371
GlaI GCGC 2 cut(s) 106, 121
GluI GCNGC 2 cut(s) 35, 108
HaeII RGCGCY 1 cut(s) 108
HaeIII GGCC 2 cut(s) 128, 389
HgaI GACGC 1 cut(s) 101
HhaI GCGC 2 cut(s) 107, 122
Hin1II CATG 2 cut(s) 239, 337
Hin6I GCGC 2 cut(s) 105, 120
HinP1I GCGC 2 cut(s) 105, 120
HinfI GANTC 1 cut(s) 150
HphI GGTGA 1 cut(s) 263
Hpy166II GTNNAC 1 cut(s) 230
Hpy188I TCNGA 1 cut(s) 190
Hpy188III TCNNGA 3 cut(s) 27, 89, 371
Hpy8I GTNNAC 1 cut(s) 230
HpyAV CCTTC 2 cut(s) 110, 277
HpyCH4V TGCA 7 cut(s) 37, 110, 137, 296, 434, 440, 446
HpyF10VI GCNNNNNNNGC 1 cut(s) 134
HpyF3I CTNAG 2 cut(s) 247, 315
Hsp92II CATG 2 cut(s) 239, 337
HspAI GCGC 2 cut(s) 105, 120
Kzo9I GATC 1 cut(s) 98
LpnPI CCDG 6 cut(s) 12, 19, 87, 123, 142, 340
Lsp1109I GCAGC 2 cut(s) 21, 94
LweI GCATC 1 cut(s) 283
MaeI CTAG 2 cut(s) 197, 371
MalI GATC 1 cut(s) 100
MboI GATC 1 cut(s) 98
MboII GAAGA 1 cut(s) 384
MfeI CAATTG 1 cut(s) 111
MluCI AATT 3 cut(s) 111, 266, 427
MlyI GAGTC 1 cut(s) 144
MnlI CCTC 7 cut(s) 27, 79, 298, 313, 379, 400, 433
Mph1103I ATGCAT 2 cut(s) 298, 448
MseI TTAA 3 cut(s) 144, 174, 269
MslI CAYNNNNRTG 1 cut(s) 240
MunI CAATTG 1 cut(s) 111
MvnI CGCG 1 cut(s) 122
MwoI GCNNNNNNNGC 1 cut(s) 134
NdeI CATATG 1 cut(s) 436
NdeII GATC 1 cut(s) 98
NlaIII CATG 2 cut(s) 239, 337
NsiI ATGCAT 2 cut(s) 298, 448
PceI AGGCCT 1 cut(s) 389
PkrI GCNGC 2 cut(s) 36, 109
PleI GAGTC 1 cut(s) 144
PpsI GAGTC 1 cut(s) 144
PstNI CAGNNNCTG 1 cut(s) 12
RsaI GTAC 1 cut(s) 452
RsaNI GTAC 1 cut(s) 451
RseI CAYNNNNRTG 1 cut(s) 240
SaqAI TTAA 3 cut(s) 144, 174, 269
SatI GCNGC 2 cut(s) 35, 108
Sau3AI GATC 1 cut(s) 98
SchI GAGTC 1 cut(s) 144
SetI ASST 6 cut(s) 11, 49, 61, 180, 253, 425
SfaNI GCATC 1 cut(s) 283
SmiMI CAYNNNNRTG 1 cut(s) 240
SmlI CTYRAG 2 cut(s) 87, 454
SmoI CTYRAG 2 cut(s) 87, 454
Sse9I AATT 3 cut(s) 111, 266, 427
SseBI AGGCCT 1 cut(s) 389
SsiI CCGC 1 cut(s) 262
SspI AATATT 1 cut(s) 408
SspMI CTAG 2 cut(s) 197, 371
StuI AGGCCT 1 cut(s) 389
TasI AATT 3 cut(s) 111, 266, 427
TatI WGTACW 1 cut(s) 450
Tru1I TTAA 3 cut(s) 144, 174, 269
Tru9I TTAA 3 cut(s) 144, 174, 269
TseI GCWGC 2 cut(s) 34, 107
TspDTI ATGAA 1 cut(s) 384
TspGWI ACGGA 1 cut(s) 9
XapI RAATTY 1 cut(s) 427
XbaI TCTAGA 1 cut(s) 370
XmiI GTMKAC 1 cut(s) 229
XspI CTAG 2 cut(s) 197, 371
Zsp2I ATGCAT 2 cut(s) 298, 448
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.