Rh4DG384900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0017435
Physical Location & Seq
Forward (+)
60211387 .. 60212537
1151 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG384900.1

Sequence Viewer

Length: 357 bp
ATGACGAACTTCTGTCCTCCATGGTCTGGAACGCTGCAACACAAATCTTGTGGGCAAGGTTGTTCTCCCTCCCAAACCCACGCTGCTCAAGACGCACGATCTGGCGTTGCAATTGAAGGCGCGTTGGCCTGCCTTGCAGGGTTGATTCTTTTCTCTGGTGTATTAACAGTATTATACATGTTTGCTTCATGCAGGATTAACAGACTCTACGAGTTGTCTTTCTTTAATAAGGTTAGAGTATCTGGTATCCTAGAGTATCTCCTATTTCTTGGATGTGATTGTAGACATCATGGAAATGACTTAGTTATATATGGATACGATACTACAAGTTGTATGTGGCTAGGAACATTTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

12.94

Weight (kDa)

6.86

Isoelectric Point (pI)

55.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 26
AccI GTMKAC 1 cut(s) 283
AccII CGCG 1 cut(s) 122
AfiI CCNNNNNNNGG 1 cut(s) 26
AflIII ACRYGT 1 cut(s) 177
AgsI TTSAA 1 cut(s) 116
AoxI GGCC 1 cut(s) 126
ApeKI GCWGC 2 cut(s) 34, 83
AspLEI GCGC 1 cut(s) 122
BbvI GCAGC 2 cut(s) 21, 70
BciVI GTATCC 2 cut(s) 257, 308
BfaI CTAG 2 cut(s) 251, 341
BfuI GTATCC 2 cut(s) 257, 308
BisI GCNGC 2 cut(s) 35, 84
BlsI GCNGC 2 cut(s) 36, 85
BpuEI CTTGAG 1 cut(s) 72
BsaJI CCNNGG 1 cut(s) 20
Bsc4I CCNNNNNNNGG 1 cut(s) 26
BseDI CCNNGG 1 cut(s) 20
BseGI GGATG 1 cut(s) 278
BseLI CCNNNNNNNGG 1 cut(s) 26
BseXI GCAGC 2 cut(s) 21, 70
Bsh1236I CGCG 1 cut(s) 122
BshFI GGCC 1 cut(s) 128
BslI CCNNNNNNNGG 1 cut(s) 26
BsnI GGCC 1 cut(s) 128
Bsp143I GATC 1 cut(s) 98
Bsp19I CCATGG 1 cut(s) 20
BspANI GGCC 1 cut(s) 128
BspFNI CGCG 1 cut(s) 122
BssECI CCNNGG 1 cut(s) 20
BssMI GATC 1 cut(s) 98
BssT1I CCWWGG 1 cut(s) 20
Bst4CI ACNGT 1 cut(s) 169
BstC8I GCNNGC 1 cut(s) 130
BstDEI CTNAG 1 cut(s) 301
BstDSI CCRYGG 1 cut(s) 20
BstF5I GGATG 1 cut(s) 278
BstFNI CGCG 1 cut(s) 122
BstHHI GCGC 1 cut(s) 122
BstKTI GATC 1 cut(s) 101
BstMBI GATC 1 cut(s) 98
BstMWI GCNNNNNNNGC 2 cut(s) 92, 134
BstNSI RCATGY 1 cut(s) 181
BstUI CGCG 1 cut(s) 122
BstV1I GCAGC 2 cut(s) 21, 70
BsuI GTATCC 2 cut(s) 257, 308
BsuRI GGCC 1 cut(s) 128
BtgI CCRYGG 1 cut(s) 20
BtsCI GGATG 1 cut(s) 278
Cac8I GCNNGC 1 cut(s) 130
CfoI GCGC 1 cut(s) 122
CseI GACGC 1 cut(s) 101
CspCI CAANNNNNGTGG 2 cut(s) 31, 66
CviAII CATG 4 cut(s) 21, 178, 189, 290
CviJI RGCY 2 cut(s) 128, 340
CviKI_1 RGCY 2 cut(s) 128, 340
DdeI CTNAG 1 cut(s) 301
DpnI GATC 1 cut(s) 100
DpnII GATC 1 cut(s) 98
Eco130I CCWWGG 1 cut(s) 20
EcoT14I CCWWGG 1 cut(s) 20
ErhI CCWWGG 1 cut(s) 20
FaeI CATG 4 cut(s) 24, 181, 192, 293
FaiI YATR 9 cut(s) 22, 175, 179, 190, 291, 308, 310, 312, 335
FatI CATG 4 cut(s) 20, 177, 188, 289
FblI GTMKAC 1 cut(s) 283
Fnu4HI GCNGC 2 cut(s) 35, 84
FokI GGATG 1 cut(s) 285
Fsp4HI GCNGC 2 cut(s) 35, 84
FspBI CTAG 2 cut(s) 251, 341
GlaI GCGC 1 cut(s) 121
GluI GCNGC 2 cut(s) 35, 84
HaeIII GGCC 1 cut(s) 128
HgaI GACGC 1 cut(s) 101
HhaI GCGC 1 cut(s) 122
Hin1II CATG 4 cut(s) 24, 181, 192, 293
Hin6I GCGC 1 cut(s) 120
HinP1I GCGC 1 cut(s) 120
HinfI GANTC 2 cut(s) 145, 204
Hpy166II GTNNAC 1 cut(s) 284
Hpy188III TCNNGA 2 cut(s) 27, 89
Hpy8I GTNNAC 1 cut(s) 284
HpyAV CCTTC 1 cut(s) 110
HpyCH4III ACNGT 1 cut(s) 169
HpyCH4V TGCA 4 cut(s) 37, 110, 137, 192
HpyF10VI GCNNNNNNNGC 2 cut(s) 92, 134
HpyF3I CTNAG 1 cut(s) 301
Hsp92II CATG 4 cut(s) 24, 181, 192, 293
HspAI GCGC 1 cut(s) 120
Kzo9I GATC 1 cut(s) 98
LpnPI CCDG 7 cut(s) 12, 87, 123, 141, 142, 178, 228
Lsp1109I GCAGC 2 cut(s) 21, 70
MaeI CTAG 2 cut(s) 251, 341
MalI GATC 1 cut(s) 100
MboI GATC 1 cut(s) 98
MfeI CAATTG 1 cut(s) 111
MluCI AATT 1 cut(s) 111
MlyI GAGTC 1 cut(s) 198
MnlI CCTC 2 cut(s) 27, 79
MseI TTAA 4 cut(s) 164, 198, 225, 355
MslI CAYNNNNRTG 1 cut(s) 294
MunI CAATTG 1 cut(s) 111
MvnI CGCG 1 cut(s) 122
MwoI GCNNNNNNNGC 2 cut(s) 92, 134
NcoI CCATGG 1 cut(s) 20
NdeII GATC 1 cut(s) 98
NlaIII CATG 4 cut(s) 24, 181, 192, 293
NspI RCATGY 1 cut(s) 181
PciI ACATGT 1 cut(s) 177
PfeI GAWTC 1 cut(s) 145
PflMI CCANNNNNTGG 1 cut(s) 26
PkrI GCNGC 2 cut(s) 36, 85
PleI GAGTC 1 cut(s) 198
PpsI GAGTC 1 cut(s) 198
PscI ACATGT 1 cut(s) 177
RseI CAYNNNNRTG 1 cut(s) 294
SaqAI TTAA 4 cut(s) 164, 198, 225, 355
SatI GCNGC 2 cut(s) 35, 84
Sau3AI GATC 1 cut(s) 98
SchI GAGTC 1 cut(s) 198
SetI ASST 2 cut(s) 61, 234
SmiMI CAYNNNNRTG 1 cut(s) 294
SmlI CTYRAG 1 cut(s) 87
SmoI CTYRAG 1 cut(s) 87
Sse9I AATT 1 cut(s) 111
SspMI CTAG 2 cut(s) 251, 341
StyI CCWWGG 1 cut(s) 20
TaaI ACNGT 1 cut(s) 169
TasI AATT 1 cut(s) 111
TfiI GAWTC 1 cut(s) 145
Tru1I TTAA 4 cut(s) 164, 198, 225, 355
Tru9I TTAA 4 cut(s) 164, 198, 225, 355
TseI GCWGC 2 cut(s) 34, 83
TspDTI ATGAA 1 cut(s) 177
Van91I CCANNNNNTGG 1 cut(s) 26
XceI RCATGY 1 cut(s) 181
XmiI GTMKAC 1 cut(s) 283
XspI CTAG 2 cut(s) 251, 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.