Rroxscaffold_2G00153850

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0018159
Physical Location & Seq
Reverse (-)
90574491 .. 90580567
6077 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00153850.1

Sequence Viewer

Length: 393 bp
ATGGTGCCATTAGGGAAGCCGGACATACACACTAACAAGCTCAAGATCACCACGAAATTGAGTAGTGTTTCTAAACAAATCATTCCGGCCTCTACCACGGTTTTTGTTCCCGATCCTTTGTCTTTGGATCAAAGTCTACTAGATGAACAAGTGGTTTTTGATTCAGCAGAGCAAAACCCGGGGGTTGACAGCGAAGTCTCCTCCACCACAACCGATGGCGCTAGCTTGATGGCATCGAAAGAAGAAGAGAAGAAGTTGGAACTTCCAAAGACAGCTATGAGGAAGTATGGAAATTGTATGGCTGATCATACATTCCTTGAAGTACCTAACTATGGAAAGCCATGGCAAGTCGAACTGAGAACATTAGCTCCATTGGGTTTACTTAGAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

14.25

Weight (kDa)

5.35

Isoelectric Point (pI)

35.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 194
AccB1I GGYRCC 1 cut(s) 4
AccI GTMKAC 1 cut(s) 136
AclWI GGATC 2 cut(s) 107, 135
AfaI GTAC 1 cut(s) 324
AfiI CCNNNNNNNGG 1 cut(s) 332
AgsI TTSAA 1 cut(s) 320
AloI GAACNNNNNNTCC 2 cut(s) 352, 384
AluBI AGCT 4 cut(s) 40, 225, 275, 368
AluI AGCT 4 cut(s) 40, 225, 275, 368
Alw26I GTCTC 1 cut(s) 202
AlwI GGATC 2 cut(s) 107, 135
Ama87I CYCGRG 1 cut(s) 178
AoxI GGCC 1 cut(s) 87
AspLEI GCGC 1 cut(s) 221
AsuC2I CCSGG 2 cut(s) 179, 180
AsuHPI GGTGA 1 cut(s) 40
AsuNHI GCTAGC 1 cut(s) 221
AvaI CYCGRG 1 cut(s) 178
BanI GGYRCC 1 cut(s) 4
BccI CCATC 2 cut(s) 209, 223
BclI TGATCA 1 cut(s) 304
BcnI CCSGG 2 cut(s) 179, 180
BcoDI GTCTC 1 cut(s) 202
BfaI CTAG 2 cut(s) 140, 222
BfoI RGCGCY 1 cut(s) 222
Bme1390I CCNGG 2 cut(s) 179, 180
BmeT110I CYCGRG 1 cut(s) 178
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 2 cut(s) 179, 180
BmsI GCATC 1 cut(s) 242
BmtI GCTAGC 1 cut(s) 225
BpuEI CTTGAG 1 cut(s) 26
BpuMI CCSGG 2 cut(s) 179, 180
BsaJI CCNNGG 4 cut(s) 96, 178, 179, 341
BsaXI ACNNNNNCTCC 2 cut(s) 352, 382
Bsc4I CCNNNNNNNGG 1 cut(s) 332
BseDI CCNNGG 4 cut(s) 96, 178, 179, 341
BseLI CCNNNNNNNGG 1 cut(s) 332
BseMII CTCAG 1 cut(s) 347
BseRI GAGGAG 1 cut(s) 190
BshFI GGCC 1 cut(s) 89
BshNI GGYRCC 1 cut(s) 4
BsiHKCI CYCGRG 1 cut(s) 178
BsiSI CCGG 3 cut(s) 20, 86, 179
BslI CCNNNNNNNGG 1 cut(s) 332
BsmAI GTCTC 1 cut(s) 202
BsnI GGCC 1 cut(s) 89
BsoBI CYCGRG 1 cut(s) 178
Bsp143I GATC 4 cut(s) 45, 112, 127, 304
Bsp19I CCATGG 1 cut(s) 341
BspANI GGCC 1 cut(s) 89
BspCNI CTCAG 1 cut(s) 348
BspLI GGNNCC 1 cut(s) 6
BspOI GCTAGC 1 cut(s) 225
BspPI GGATC 2 cut(s) 107, 135
BspT107I GGYRCC 1 cut(s) 4
BssECI CCNNGG 4 cut(s) 96, 178, 179, 341
BssMI GATC 4 cut(s) 45, 112, 127, 304
BssT1I CCWWGG 1 cut(s) 341
Bst4CI ACNGT 1 cut(s) 100
Bst6I CTCTTC 1 cut(s) 240
BstC8I GCNNGC 1 cut(s) 223
BstDEI CTNAG 2 cut(s) 356, 383
BstDSI CCRYGG 2 cut(s) 96, 341
BstH2I RGCGCY 1 cut(s) 222
BstHHI GCGC 1 cut(s) 221
BstKTI GATC 4 cut(s) 48, 115, 130, 307
BstMAI GTCTC 1 cut(s) 202
BstMBI GATC 4 cut(s) 45, 112, 127, 304
BstSCI CCNGG 2 cut(s) 177, 178
BsuRI GGCC 1 cut(s) 89
BtgI CCRYGG 2 cut(s) 96, 341
Cac8I GCNNGC 1 cut(s) 223
CfoI GCGC 1 cut(s) 221
Cfr9I CCCGGG 1 cut(s) 178
Csp6I GTAC 1 cut(s) 323
CspCI CAANNNNNGTGG 2 cut(s) 85, 120
CviAII CATG 1 cut(s) 342
CviJI RGCY 8 cut(s) 19, 40, 89, 225, 275, 302, 340, 368
CviKI_1 RGCY 8 cut(s) 19, 40, 89, 225, 275, 302, 340, 368
CviQI GTAC 1 cut(s) 323
DdeI CTNAG 2 cut(s) 356, 383
DpnI GATC 4 cut(s) 47, 114, 129, 306
DpnII GATC 4 cut(s) 45, 112, 127, 304
DrdI GACNNNNNNGTC 1 cut(s) 194
DseDI GACNNNNNNGTC 1 cut(s) 194
Eam1104I CTCTTC 1 cut(s) 240
EarI CTCTTC 1 cut(s) 240
Eco130I CCWWGG 1 cut(s) 341
Eco88I CYCGRG 1 cut(s) 178
EcoT14I CCWWGG 1 cut(s) 341
ErhI CCWWGG 1 cut(s) 341
FaeI CATG 1 cut(s) 345
FaiI YATR 7 cut(s) 26, 278, 288, 299, 309, 333, 343
FatI CATG 1 cut(s) 341
FbaI TGATCA 1 cut(s) 304
FblI GTMKAC 1 cut(s) 136
FspBI CTAG 2 cut(s) 140, 222
GlaI GCGC 1 cut(s) 220
HaeII RGCGCY 1 cut(s) 222
HaeIII GGCC 1 cut(s) 89
HapII CCGG 3 cut(s) 20, 86, 179
HhaI GCGC 1 cut(s) 221
Hin1II CATG 1 cut(s) 345
Hin6I GCGC 1 cut(s) 219
HinP1I GCGC 1 cut(s) 219
HincII GTYRAC 1 cut(s) 187
HindII GTYRAC 1 cut(s) 187
HinfI GANTC 1 cut(s) 161
HpaII CCGG 3 cut(s) 20, 86, 179
HphI GGTGA 1 cut(s) 40
Hpy166II GTNNAC 3 cut(s) 137, 187, 380
Hpy188III TCNNGA 2 cut(s) 43, 110
Hpy8I GTNNAC 3 cut(s) 137, 187, 380
HpyCH4III ACNGT 1 cut(s) 100
HpyF3I CTNAG 2 cut(s) 356, 383
Hsp92II CATG 1 cut(s) 345
HspAI GCGC 1 cut(s) 219
Ksp22I TGATCA 1 cut(s) 304
Kzo9I GATC 4 cut(s) 45, 112, 127, 304
LmnI GCTCC 1 cut(s) 373
LpnPI CCDG 3 cut(s) 33, 99, 192
LweI GCATC 1 cut(s) 242
MaeI CTAG 2 cut(s) 140, 222
MalI GATC 4 cut(s) 47, 114, 129, 306
MboI GATC 4 cut(s) 45, 112, 127, 304
MboII GAAGA 3 cut(s) 254, 257, 262
MluCI AATT 2 cut(s) 56, 292
MmeI TCCRAC 1 cut(s) 237
MnlI CCTC 3 cut(s) 100, 211, 273
MspI CCGG 3 cut(s) 20, 86, 179
MspR9I CCNGG 2 cut(s) 179, 180
NciI CCSGG 2 cut(s) 179, 180
NcoI CCATGG 1 cut(s) 341
NdeII GATC 4 cut(s) 45, 112, 127, 304
NheI GCTAGC 1 cut(s) 221
NlaIII CATG 1 cut(s) 345
NlaIV GGNNCC 1 cut(s) 6
PfeI GAWTC 1 cut(s) 161
PspN4I GGNNCC 1 cut(s) 6
RsaI GTAC 1 cut(s) 324
RsaNI GTAC 1 cut(s) 323
Sau3AI GATC 4 cut(s) 45, 112, 127, 304
ScrFI CCNGG 2 cut(s) 179, 180
SetI ASST 5 cut(s) 42, 227, 277, 328, 370
SfaNI GCATC 1 cut(s) 242
SmaI CCCGGG 1 cut(s) 180
SmlI CTYRAG 1 cut(s) 41
SmoI CTYRAG 1 cut(s) 41
Sse9I AATT 2 cut(s) 56, 292
SspMI CTAG 2 cut(s) 140, 222
StyD4I CCNGG 2 cut(s) 177, 178
StyI CCWWGG 1 cut(s) 341
TaaI ACNGT 1 cut(s) 100
TaqI TCGA 2 cut(s) 236, 351
TasI AATT 2 cut(s) 56, 292
TfiI GAWTC 1 cut(s) 161
TspDTI ATGAA 1 cut(s) 159
TspMI CCCGGG 1 cut(s) 178
XmaI CCCGGG 1 cut(s) 178
XmiI GTMKAC 1 cut(s) 136
XspI CTAG 2 cut(s) 140, 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.