Rh3DG027300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0018159
Physical Location & Seq
Forward (+)
1825543 .. 1827107
1565 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG027300.1

Sequence Viewer

Length: 318 bp
ATGTCCTGGTGGAACGTAAGTATGCTCTATGTTGATACTGCTAGATTAAATGGTCCTTCTTTAGTTACATTCTTCCTCGATGTTCGGAATCTAGGGTATTTATTGGAAAAGTTTGAAAAGAAGGATATATATATCTCAAGCAGCGAAATTAGAGACACATGGTGCCCCAGCTCTATTGGAAAGGAACTTCCAGAGACAGCTATGAGGAAGTATGGAAATTGTATGGCTGATCATACATTCGTTGAAGTACCTAACTGTGGAAAGCCATGGCAAGTCGAACTAAGAACATCAGCTCCATTGGGTTTACTTAGAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

12.06

Weight (kDa)

6.56

Isoelectric Point (pI)

32.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 162
AdeI CACNNNGTG 1 cut(s) 162
AfaI GTAC 1 cut(s) 249
AfiI CCNNNNNNNGG 1 cut(s) 257
AgsI TTSAA 2 cut(s) 116, 245
AjnI CCWGG 1 cut(s) 5
AloI GAACNNNNNNTCC 2 cut(s) 277, 309
AluBI AGCT 3 cut(s) 171, 200, 293
AluI AGCT 3 cut(s) 171, 200, 293
Alw26I GTCTC 2 cut(s) 147, 188
ApeKI GCWGC 1 cut(s) 141
AspS9I GGNCC 1 cut(s) 53
AvaII GGWCC 1 cut(s) 53
BaeGI GKGCMC 1 cut(s) 167
BanI GGYRCC 1 cut(s) 162
BbvI GCAGC 1 cut(s) 153
BciT130I CCWGG 1 cut(s) 7
BclI TGATCA 1 cut(s) 229
BcoDI GTCTC 2 cut(s) 147, 188
BfaI CTAG 2 cut(s) 42, 92
BisI GCNGC 1 cut(s) 142
BlsI GCNGC 1 cut(s) 143
Bme1390I CCNGG 1 cut(s) 7
Bme18I GGWCC 1 cut(s) 53
BmgT120I GGNCC 1 cut(s) 53
BmiI GGNNCC 1 cut(s) 164
BmrFI CCNGG 1 cut(s) 7
BpuEI CTTGAG 1 cut(s) 121
BsaJI CCNNGG 1 cut(s) 266
BsaXI ACNNNNNCTCC 2 cut(s) 277, 307
Bsc4I CCNNNNNNNGG 1 cut(s) 257
BseBI CCWGG 1 cut(s) 7
BseDI CCNNGG 1 cut(s) 266
BseLI CCNNNNNNNGG 1 cut(s) 257
BseSI GKGCMC 1 cut(s) 167
BseXI GCAGC 1 cut(s) 153
BseYI CCCAGC 1 cut(s) 167
BshNI GGYRCC 1 cut(s) 162
BslI CCNNNNNNNGG 1 cut(s) 257
BsmAI GTCTC 2 cut(s) 147, 188
Bsp1286I GDGCHC 1 cut(s) 167
Bsp143I GATC 1 cut(s) 229
Bsp19I CCATGG 1 cut(s) 266
BspLI GGNNCC 1 cut(s) 164
BspT107I GGYRCC 1 cut(s) 162
BssECI CCNNGG 1 cut(s) 266
BssMI GATC 1 cut(s) 229
BssT1I CCWWGG 1 cut(s) 266
Bst2UI CCWGG 1 cut(s) 7
Bst4CI ACNGT 1 cut(s) 257
BstDEI CTNAG 2 cut(s) 281, 308
BstDSI CCRYGG 1 cut(s) 266
BstKTI GATC 1 cut(s) 232
BstMAI GTCTC 2 cut(s) 147, 188
BstMBI GATC 1 cut(s) 229
BstNI CCWGG 1 cut(s) 7
BstSCI CCNGG 1 cut(s) 5
BstSLI GKGCMC 1 cut(s) 167
BstV1I GCAGC 1 cut(s) 153
BtgI CCRYGG 1 cut(s) 266
Cfr13I GGNCC 1 cut(s) 53
Csp6I GTAC 1 cut(s) 248
CviAII CATG 2 cut(s) 159, 267
CviJI RGCY 5 cut(s) 171, 200, 227, 265, 293
CviKI_1 RGCY 5 cut(s) 171, 200, 227, 265, 293
CviQI GTAC 1 cut(s) 248
DdeI CTNAG 2 cut(s) 281, 308
DpnI GATC 1 cut(s) 231
DpnII GATC 1 cut(s) 229
DraIII CACNNNGTG 1 cut(s) 162
Eco130I CCWWGG 1 cut(s) 266
Eco47I GGWCC 1 cut(s) 53
EcoRII CCWGG 1 cut(s) 5
EcoT14I CCWWGG 1 cut(s) 266
ErhI CCWWGG 1 cut(s) 266
FaeI CATG 2 cut(s) 162, 270
FatI CATG 2 cut(s) 158, 266
FbaI TGATCA 1 cut(s) 229
Fnu4HI GCNGC 1 cut(s) 142
Fsp4HI GCNGC 1 cut(s) 142
FspBI CTAG 2 cut(s) 42, 92
GluI GCNGC 1 cut(s) 142
GsaI CCCAGC 1 cut(s) 171
Hin1II CATG 2 cut(s) 162, 270
HinfI GANTC 1 cut(s) 88
Hpy166II GTNNAC 1 cut(s) 305
Hpy188I TCNGA 1 cut(s) 87
Hpy188III TCNNGA 1 cut(s) 191
Hpy8I GTNNAC 1 cut(s) 305
HpyAV CCTTC 2 cut(s) 66, 115
HpyCH4III ACNGT 1 cut(s) 257
HpyCH4IV ACGT 1 cut(s) 15
HpyF3I CTNAG 2 cut(s) 281, 308
HpySE526I ACGT 1 cut(s) 15
Hsp92II CATG 2 cut(s) 162, 270
Ksp22I TGATCA 1 cut(s) 229
Kzo9I GATC 1 cut(s) 229
LmnI GCTCC 1 cut(s) 298
LpnPI CCDG 3 cut(s) 19, 181, 204
Lsp1109I GCAGC 1 cut(s) 153
MaeI CTAG 2 cut(s) 42, 92
MaeII ACGT 1 cut(s) 15
MaeIII GTNAC 1 cut(s) 64
MalI GATC 1 cut(s) 231
MboI GATC 1 cut(s) 229
MboII GAAGA 1 cut(s) 64
MhlI GDGCHC 1 cut(s) 167
MluCI AATT 2 cut(s) 147, 217
MnlI CCTC 2 cut(s) 86, 198
MseI TTAA 1 cut(s) 47
MspR9I CCNGG 1 cut(s) 7
MvaI CCWGG 1 cut(s) 7
NcoI CCATGG 1 cut(s) 266
NdeII GATC 1 cut(s) 229
NlaIII CATG 2 cut(s) 162, 270
NlaIV GGNNCC 1 cut(s) 164
PfeI GAWTC 1 cut(s) 88
PkrI GCNGC 1 cut(s) 143
Psp6I CCWGG 1 cut(s) 5
PspFI CCCAGC 1 cut(s) 167
PspGI CCWGG 1 cut(s) 5
PspN4I GGNNCC 1 cut(s) 164
PspPI GGNCC 1 cut(s) 53
RsaI GTAC 1 cut(s) 249
RsaNI GTAC 1 cut(s) 248
SaqAI TTAA 1 cut(s) 47
SatI GCNGC 1 cut(s) 142
Sau3AI GATC 1 cut(s) 229
Sau96I GGNCC 1 cut(s) 53
ScrFI CCNGG 1 cut(s) 7
SduI GDGCHC 1 cut(s) 167
SetI ASST 5 cut(s) 18, 173, 202, 253, 295
SinI GGWCC 1 cut(s) 53
SmlI CTYRAG 1 cut(s) 136
SmoI CTYRAG 1 cut(s) 136
Sse9I AATT 2 cut(s) 147, 217
SspMI CTAG 2 cut(s) 42, 92
StyD4I CCNGG 1 cut(s) 5
StyI CCWWGG 1 cut(s) 266
TaaI ACNGT 1 cut(s) 257
TaiI ACGT 1 cut(s) 18
TaqI TCGA 2 cut(s) 78, 276
TasI AATT 2 cut(s) 147, 217
TfiI GAWTC 1 cut(s) 88
Tru1I TTAA 1 cut(s) 47
Tru9I TTAA 1 cut(s) 47
TseI GCWGC 1 cut(s) 141
VpaK11BI GGWCC 1 cut(s) 53
XspI CTAG 2 cut(s) 42, 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.