Rh3AG032200
NAC Family

Inactive leucine-rich repeat receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0018159
Physical Location & Seq
Forward (+)
2171111 .. 2173286
2176 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG032200.1

Sequence Viewer

Length: 483 bp
ATGGATCGAAGTCTACTAGATGAACAAGTGCTTTCTGATTCAGCAGAGCGAAGCCCAGGCGTTGACAGCGAAGTCTCCTCCACCACAGCCGATGGCGCTGGCTTGATGGCATCGAAAGAAGAAGAGAAGAAGTTGGATATCATATATATATCTCAAGCAGCGAAATTAGAGACACATGGTGCCCCAGTATGTCGATTTTTTTCACTTGAAGAGTTGAAGGAAGCAACAAACGACTTTGATTTCTCAATGTTTTTGTCTGAAGGCTCTATTGGAAAGGAACTTCCAGAGACAGCTATGAGGAAGTATGGAAATTGTATGGCTGATCATACATTCATTGAAGTTCCGCTGATTTGGAGGGCAGGAGTTGTGGAGAGGGGCCTTTATTGCGAGGTCGAGTACGTTCCTAGCGCGGCGTGGGATTCTATGAAGCTAGGTGGGACGGTGGGTGGCGGATGTGGCTTGAGTGAGGAGGGGTTGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_1 LRR_8 Pkinase_Tyr

Protein Analysis

160

Amino Acids

17.37

Weight (kDa)

4.42

Isoelectric Point (pI)

42.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 71
AccB1I GGYRCC 1 cut(s) 179
AccI GTMKAC 1 cut(s) 13
AccII CGCG 1 cut(s) 410
AciI CCGC 3 cut(s) 344, 410, 450
AclWI GGATC 1 cut(s) 12
AcuI CTGAAG 1 cut(s) 279
AdeI CACNNNGTG 1 cut(s) 179
AfaI GTAC 1 cut(s) 398
AgsI TTSAA 3 cut(s) 209, 217, 338
AjnI CCWGG 1 cut(s) 55
AjuI GAANNNNNNNTTGG 2 cut(s) 252, 284
AluBI AGCT 2 cut(s) 293, 430
AluI AGCT 2 cut(s) 293, 430
Alw26I GTCTC 3 cut(s) 79, 164, 281
AlwI GGATC 1 cut(s) 12
AoxI GGCC 1 cut(s) 376
ApeKI GCWGC 1 cut(s) 158
AspLEI GCGC 2 cut(s) 98, 410
AspS9I GGNCC 1 cut(s) 376
BaeGI GKGCMC 1 cut(s) 184
BanI GGYRCC 1 cut(s) 179
BbvI GCAGC 1 cut(s) 170
BccI CCATC 2 cut(s) 86, 100
BciT130I CCWGG 1 cut(s) 57
BclI TGATCA 1 cut(s) 322
BcoDI GTCTC 3 cut(s) 79, 164, 281
BfaI CTAG 3 cut(s) 17, 405, 431
BfoI RGCGCY 1 cut(s) 99
BisI GCNGC 2 cut(s) 159, 411
BlsI GCNGC 2 cut(s) 160, 412
Bme1390I CCNGG 1 cut(s) 57
BmgT120I GGNCC 1 cut(s) 376
BmiI GGNNCC 2 cut(s) 181, 377
BmrFI CCNGG 1 cut(s) 57
BmrI ACTGGG 1 cut(s) 179
BmsI GCATC 1 cut(s) 119
BmuI ACTGGG 1 cut(s) 179
BpuEI CTTGAG 2 cut(s) 138, 481
BsaJI CCNNGG 1 cut(s) 55
Bse1I ACTGG 1 cut(s) 185
BseBI CCWGG 1 cut(s) 57
BseDI CCNNGG 1 cut(s) 55
BseGI GGATG 1 cut(s) 458
BseNI ACTGG 1 cut(s) 185
BseRI GAGGAG 2 cut(s) 67, 482
BseSI GKGCMC 1 cut(s) 184
BseXI GCAGC 1 cut(s) 170
Bsh1236I CGCG 1 cut(s) 410
BshFI GGCC 1 cut(s) 378
BshNI GGYRCC 1 cut(s) 179
BslFI GGGAC 1 cut(s) 451
BsmAI GTCTC 3 cut(s) 79, 164, 281
BsmFI GGGAC 1 cut(s) 451
BsnI GGCC 1 cut(s) 378
Bsp1286I GDGCHC 1 cut(s) 184
Bsp143I GATC 2 cut(s) 4, 322
BspACI CCGC 3 cut(s) 344, 410, 450
BspANI GGCC 1 cut(s) 378
BspFNI CGCG 1 cut(s) 410
BspLI GGNNCC 2 cut(s) 181, 377
BspPI GGATC 1 cut(s) 12
BspT107I GGYRCC 1 cut(s) 179
BsrI ACTGG 1 cut(s) 185
BssECI CCNNGG 1 cut(s) 55
BssMI GATC 2 cut(s) 4, 322
Bst2UI CCWGG 1 cut(s) 57
Bst4CI ACNGT 1 cut(s) 442
Bst6I CTCTTC 2 cut(s) 117, 204
BstC8I GCNNGC 1 cut(s) 100
BstF5I GGATG 1 cut(s) 458
BstFNI CGCG 1 cut(s) 410
BstH2I RGCGCY 1 cut(s) 99
BstHHI GCGC 2 cut(s) 98, 410
BstKTI GATC 2 cut(s) 7, 325
BstMAI GTCTC 3 cut(s) 79, 164, 281
BstMBI GATC 2 cut(s) 4, 322
BstMWI GCNNNNNNNGC 4 cut(s) 66, 95, 384, 456
BstNI CCWGG 1 cut(s) 57
BstSCI CCNGG 1 cut(s) 55
BstSLI GKGCMC 1 cut(s) 184
BstUI CGCG 1 cut(s) 410
BstV1I GCAGC 1 cut(s) 170
BsuRI GGCC 1 cut(s) 378
BtsCI GGATG 1 cut(s) 458
Cac8I GCNNGC 1 cut(s) 100
CfoI GCGC 2 cut(s) 98, 410
Cfr13I GGNCC 1 cut(s) 376
Csp6I GTAC 1 cut(s) 397
CviAII CATG 1 cut(s) 176
CviJI RGCY 9 cut(s) 54, 89, 102, 264, 293, 320, 378, 430, 459
CviKI_1 RGCY 9 cut(s) 54, 89, 102, 264, 293, 320, 378, 430, 459
CviQI GTAC 1 cut(s) 397
DpnI GATC 2 cut(s) 6, 324
DpnII GATC 2 cut(s) 4, 322
DraIII CACNNNGTG 1 cut(s) 179
DrdI GACNNNNNNGTC 1 cut(s) 71
DseDI GACNNNNNNGTC 1 cut(s) 71
Eam1104I CTCTTC 2 cut(s) 117, 204
EarI CTCTTC 2 cut(s) 117, 204
EciI GGCGGA 1 cut(s) 465
Eco32I GATATC 1 cut(s) 139
Eco57I CTGAAG 1 cut(s) 279
EcoO109I RGGNCCY 1 cut(s) 376
EcoRII CCWGG 1 cut(s) 55
EcoRV GATATC 1 cut(s) 139
FaeI CATG 1 cut(s) 179
FaqI GGGAC 1 cut(s) 451
FatI CATG 1 cut(s) 175
FbaI TGATCA 1 cut(s) 322
FblI GTMKAC 1 cut(s) 13
Fnu4HI GCNGC 2 cut(s) 159, 411
FokI GGATG 1 cut(s) 465
Fsp4HI GCNGC 2 cut(s) 159, 411
FspBI CTAG 3 cut(s) 17, 405, 431
GlaI GCGC 2 cut(s) 97, 409
GluI GCNGC 2 cut(s) 159, 411
HaeII RGCGCY 1 cut(s) 99
HaeIII GGCC 1 cut(s) 378
HhaI GCGC 2 cut(s) 98, 410
Hin1II CATG 1 cut(s) 179
Hin6I GCGC 2 cut(s) 96, 408
HinP1I GCGC 2 cut(s) 96, 408
HincII GTYRAC 1 cut(s) 64
HindII GTYRAC 1 cut(s) 64
HinfI GANTC 2 cut(s) 38, 419
Hpy166II GTNNAC 2 cut(s) 14, 64
Hpy188I TCNGA 2 cut(s) 37, 259
Hpy188III TCNNGA 1 cut(s) 284
Hpy8I GTNNAC 2 cut(s) 14, 64
HpyAV CCTTC 2 cut(s) 211, 254
HpyCH4III ACNGT 1 cut(s) 442
HpyCH4IV ACGT 1 cut(s) 399
HpyF10VI GCNNNNNNNGC 4 cut(s) 66, 95, 384, 456
HpySE526I ACGT 1 cut(s) 399
Hsp92II CATG 1 cut(s) 179
HspAI GCGC 2 cut(s) 96, 408
Ksp22I TGATCA 1 cut(s) 322
Kzo9I GATC 2 cut(s) 4, 322
LpnPI CCDG 6 cut(s) 42, 69, 84, 198, 297, 345
Lsp1109I GCAGC 1 cut(s) 170
LweI GCATC 1 cut(s) 119
MaeI CTAG 3 cut(s) 17, 405, 431
MaeII ACGT 1 cut(s) 399
MalI GATC 2 cut(s) 6, 324
MboI GATC 2 cut(s) 4, 322
MboII GAAGA 4 cut(s) 131, 134, 139, 221
MhlI GDGCHC 1 cut(s) 184
MluCI AATT 2 cut(s) 164, 310
MmeI TCCRAC 2 cut(s) 114, 456
MnlI CCTC 7 cut(s) 88, 291, 348, 366, 382, 460, 463
MspA1I CMGCKG 1 cut(s) 346
MspR9I CCNGG 1 cut(s) 57
MvaI CCWGG 1 cut(s) 57
MvnI CGCG 1 cut(s) 410
MwoI GCNNNNNNNGC 4 cut(s) 66, 95, 384, 456
NdeII GATC 2 cut(s) 4, 322
NlaIII CATG 1 cut(s) 179
NlaIV GGNNCC 2 cut(s) 181, 377
PfeI GAWTC 2 cut(s) 38, 419
PkrI GCNGC 2 cut(s) 160, 412
Psp6I CCWGG 1 cut(s) 55
PspGI CCWGG 1 cut(s) 55
PspN4I GGNNCC 2 cut(s) 181, 377
PspPI GGNCC 1 cut(s) 376
RsaI GTAC 1 cut(s) 398
RsaNI GTAC 1 cut(s) 397
SatI GCNGC 2 cut(s) 159, 411
Sau3AI GATC 2 cut(s) 4, 322
Sau96I GGNCC 1 cut(s) 376
ScrFI CCNGG 1 cut(s) 57
SduI GDGCHC 1 cut(s) 184
SetI ASST 5 cut(s) 295, 393, 402, 432, 436
SfaNI GCATC 1 cut(s) 119
SmlI CTYRAG 2 cut(s) 153, 460
SmoI CTYRAG 2 cut(s) 153, 460
Sse9I AATT 2 cut(s) 164, 310
SsiI CCGC 3 cut(s) 344, 410, 450
SspMI CTAG 3 cut(s) 17, 405, 431
StyD4I CCNGG 1 cut(s) 55
TaaI ACNGT 1 cut(s) 442
TaiI ACGT 1 cut(s) 402
TaqI TCGA 4 cut(s) 7, 113, 193, 393
TasI AATT 2 cut(s) 164, 310
TauI GCSGC 1 cut(s) 413
TfiI GAWTC 2 cut(s) 38, 419
TseI GCWGC 1 cut(s) 158
TspDTI ATGAA 3 cut(s) 36, 322, 440
XmiI GTMKAC 1 cut(s) 13
XspI CTAG 3 cut(s) 17, 405, 431
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.